Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2693

Experiment: KB with Ginkgolide A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2691 and Psyr_2692 overlap by 1 nucleotidesPsyr_2692 and Psyr_2693 overlap by 4 nucleotidesPsyr_2693 and Psyr_2694 are separated by 8 nucleotidesPsyr_2694 and Psyr_2695 overlap by 4 nucleotidesPsyr_2695 and Psyr_2696 overlap by 23 nucleotides Psyr_2691: Psyr_2691 - Formyl transferase, N-terminal:Formyl transferase, C-terminal, at 3,267,178 to 3,269,172 _2691 Psyr_2692: Psyr_2692 - Polysaccharide deacetylase, at 3,269,172 to 3,270,053 _2692 Psyr_2693: Psyr_2693 - Glycosyl transferase, family 39, at 3,270,050 to 3,271,702 _2693 Psyr_2694: Psyr_2694 - conserved hypothetical protein, at 3,271,711 to 3,272,037 _2694 Psyr_2695: Psyr_2695 - conserved hypothetical protein, at 3,272,034 to 3,272,468 _2695 Psyr_2696: Psyr_2696 - UDP-glucose 6-dehydrogenase, at 3,272,446 to 3,273,840 _2696 Position (kb) 3270 3271 3272Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3269.205 kb on + strandat 3269.245 kb on + strandat 3269.245 kb on + strandat 3269.245 kb on + strandat 3269.245 kb on + strandat 3269.246 kb on - strandat 3269.246 kb on - strandat 3269.246 kb on - strandat 3269.557 kb on + strand, within Psyr_2692at 3269.558 kb on - strand, within Psyr_2692at 3269.558 kb on - strand, within Psyr_2692at 3269.676 kb on + strand, within Psyr_2692at 3269.677 kb on - strand, within Psyr_2692at 3269.817 kb on + strand, within Psyr_2692at 3269.817 kb on + strand, within Psyr_2692at 3269.817 kb on + strand, within Psyr_2692at 3269.817 kb on + strand, within Psyr_2692at 3269.817 kb on + strand, within Psyr_2692at 3269.818 kb on - strand, within Psyr_2692at 3269.856 kb on + strand, within Psyr_2692at 3269.914 kb on + strand, within Psyr_2692at 3270.054 kb on + strandat 3270.055 kb on - strandat 3270.055 kb on - strandat 3270.107 kb on + strandat 3270.108 kb on - strandat 3270.108 kb on - strandat 3270.108 kb on - strandat 3270.108 kb on - strandat 3270.228 kb on - strand, within Psyr_2693at 3270.350 kb on + strand, within Psyr_2693at 3270.350 kb on + strand, within Psyr_2693at 3270.632 kb on + strand, within Psyr_2693at 3270.632 kb on + strand, within Psyr_2693at 3270.759 kb on - strand, within Psyr_2693at 3270.779 kb on - strand, within Psyr_2693at 3270.830 kb on + strand, within Psyr_2693at 3270.830 kb on + strand, within Psyr_2693at 3270.830 kb on + strand, within Psyr_2693at 3270.830 kb on + strand, within Psyr_2693at 3270.830 kb on + strand, within Psyr_2693at 3270.830 kb on + strand, within Psyr_2693at 3270.830 kb on + strand, within Psyr_2693at 3270.831 kb on - strand, within Psyr_2693at 3270.831 kb on - strand, within Psyr_2693at 3270.831 kb on - strand, within Psyr_2693at 3270.831 kb on - strand, within Psyr_2693at 3270.831 kb on - strand, within Psyr_2693at 3270.831 kb on - strand, within Psyr_2693at 3270.831 kb on - strand, within Psyr_2693at 3270.831 kb on - strand, within Psyr_2693at 3270.832 kb on + strand, within Psyr_2693at 3270.832 kb on + strand, within Psyr_2693at 3270.995 kb on + strand, within Psyr_2693at 3270.995 kb on + strand, within Psyr_2693at 3270.995 kb on + strand, within Psyr_2693at 3270.995 kb on + strand, within Psyr_2693at 3270.995 kb on + strand, within Psyr_2693at 3270.995 kb on + strand, within Psyr_2693at 3270.995 kb on + strand, within Psyr_2693at 3270.995 kb on + strand, within Psyr_2693at 3270.995 kb on + strand, within Psyr_2693at 3270.995 kb on + strand, within Psyr_2693at 3270.996 kb on - strand, within Psyr_2693at 3270.996 kb on - strand, within Psyr_2693at 3270.996 kb on - strand, within Psyr_2693at 3270.996 kb on - strand, within Psyr_2693at 3270.996 kb on - strand, within Psyr_2693at 3270.996 kb on - strand, within Psyr_2693at 3270.996 kb on - strand, within Psyr_2693at 3270.996 kb on - strand, within Psyr_2693at 3270.999 kb on + strand, within Psyr_2693at 3270.999 kb on + strand, within Psyr_2693at 3270.999 kb on + strand, within Psyr_2693at 3270.999 kb on + strand, within Psyr_2693at 3271.000 kb on - strand, within Psyr_2693at 3271.139 kb on + strand, within Psyr_2693at 3271.487 kb on + strand, within Psyr_2693at 3271.652 kb on + strandat 3271.763 kb on - strand, within Psyr_2694at 3271.769 kb on + strand, within Psyr_2694at 3271.769 kb on + strand, within Psyr_2694at 3271.860 kb on - strand, within Psyr_2694at 3271.949 kb on - strand, within Psyr_2694at 3271.974 kb on - strand, within Psyr_2694at 3272.013 kb on - strandat 3272.013 kb on - strandat 3272.275 kb on - strand, within Psyr_2695at 3272.275 kb on - strand, within Psyr_2695at 3272.289 kb on - strand, within Psyr_2695at 3272.289 kb on - strand, within Psyr_2695at 3272.295 kb on + strand, within Psyr_2695at 3272.295 kb on + strand, within Psyr_2695at 3272.308 kb on - strand, within Psyr_2695at 3272.309 kb on + strand, within Psyr_2695at 3272.486 kb on + strandat 3272.487 kb on - strandat 3272.580 kb on + strandat 3272.580 kb on + strandat 3272.581 kb on - strandat 3272.581 kb on - strandat 3272.581 kb on - strandat 3272.584 kb on + strandat 3272.584 kb on + strandat 3272.584 kb on + strandat 3272.584 kb on + strandat 3272.585 kb on - strandat 3272.585 kb on - strandat 3272.585 kb on - strandat 3272.585 kb on - strandat 3272.585 kb on - strandat 3272.585 kb on - strandat 3272.585 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM
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3,269,205 + +0.3
3,269,245 + +0.4
3,269,245 + -0.1
3,269,245 + -2.7
3,269,245 + -0.6
3,269,246 - +0.1
3,269,246 - -0.2
3,269,246 - -3.2
3,269,557 + Psyr_2692 0.44 -0.1
3,269,558 - Psyr_2692 0.44 +1.0
3,269,558 - Psyr_2692 0.44 -1.9
3,269,676 + Psyr_2692 0.57 +0.2
3,269,677 - Psyr_2692 0.57 +4.8
3,269,817 + Psyr_2692 0.73 +0.0
3,269,817 + Psyr_2692 0.73 -1.2
3,269,817 + Psyr_2692 0.73 +1.6
3,269,817 + Psyr_2692 0.73 +0.6
3,269,817 + Psyr_2692 0.73 +0.2
3,269,818 - Psyr_2692 0.73 -0.6
3,269,856 + Psyr_2692 0.78 +1.0
3,269,914 + Psyr_2692 0.84 +0.6
3,270,054 + +1.4
3,270,055 - +0.2
3,270,055 - -0.6
3,270,107 + -0.2
3,270,108 - -1.4
3,270,108 - +0.5
3,270,108 - -1.8
3,270,108 - -0.2
3,270,228 - Psyr_2693 0.11 -0.4
3,270,350 + Psyr_2693 0.18 -0.1
3,270,350 + Psyr_2693 0.18 +1.1
3,270,632 + Psyr_2693 0.35 +0.2
3,270,632 + Psyr_2693 0.35 +0.3
3,270,759 - Psyr_2693 0.43 +1.9
3,270,779 - Psyr_2693 0.44 +0.9
3,270,830 + Psyr_2693 0.47 -1.1
3,270,830 + Psyr_2693 0.47 -0.4
3,270,830 + Psyr_2693 0.47 +0.4
3,270,830 + Psyr_2693 0.47 -0.8
3,270,830 + Psyr_2693 0.47 +0.6
3,270,830 + Psyr_2693 0.47 -0.5
3,270,830 + Psyr_2693 0.47 +0.2
3,270,831 - Psyr_2693 0.47 +0.1
3,270,831 - Psyr_2693 0.47 +1.9
3,270,831 - Psyr_2693 0.47 -2.2
3,270,831 - Psyr_2693 0.47 +0.0
3,270,831 - Psyr_2693 0.47 +2.1
3,270,831 - Psyr_2693 0.47 +2.8
3,270,831 - Psyr_2693 0.47 +0.7
3,270,831 - Psyr_2693 0.47 +3.5
3,270,832 + Psyr_2693 0.47 -0.7
3,270,832 + Psyr_2693 0.47 +0.2
3,270,995 + Psyr_2693 0.57 -0.4
3,270,995 + Psyr_2693 0.57 -1.6
3,270,995 + Psyr_2693 0.57 +0.1
3,270,995 + Psyr_2693 0.57 +0.4
3,270,995 + Psyr_2693 0.57 +3.0
3,270,995 + Psyr_2693 0.57 +0.6
3,270,995 + Psyr_2693 0.57 -1.2
3,270,995 + Psyr_2693 0.57 +0.2
3,270,995 + Psyr_2693 0.57 -0.2
3,270,995 + Psyr_2693 0.57 -0.4
3,270,996 - Psyr_2693 0.57 +0.4
3,270,996 - Psyr_2693 0.57 +0.7
3,270,996 - Psyr_2693 0.57 -1.5
3,270,996 - Psyr_2693 0.57 +0.8
3,270,996 - Psyr_2693 0.57 +0.2
3,270,996 - Psyr_2693 0.57 +2.2
3,270,996 - Psyr_2693 0.57 +0.4
3,270,996 - Psyr_2693 0.57 -0.5
3,270,999 + Psyr_2693 0.57 +1.5
3,270,999 + Psyr_2693 0.57 +0.0
3,270,999 + Psyr_2693 0.57 -0.3
3,270,999 + Psyr_2693 0.57 +0.6
3,271,000 - Psyr_2693 0.57 +0.4
3,271,139 + Psyr_2693 0.66 +2.2
3,271,487 + Psyr_2693 0.87 -1.0
3,271,652 + +2.2
3,271,763 - Psyr_2694 0.16 +0.7
3,271,769 + Psyr_2694 0.18 -1.8
3,271,769 + Psyr_2694 0.18 +0.6
3,271,860 - Psyr_2694 0.46 +0.4
3,271,949 - Psyr_2694 0.73 +0.1
3,271,974 - Psyr_2694 0.80 +2.5
3,272,013 - +1.2
3,272,013 - -2.0
3,272,275 - Psyr_2695 0.55 +0.5
3,272,275 - Psyr_2695 0.55 +2.2
3,272,289 - Psyr_2695 0.59 +0.8
3,272,289 - Psyr_2695 0.59 -0.8
3,272,295 + Psyr_2695 0.60 +0.4
3,272,295 + Psyr_2695 0.60 +0.1
3,272,308 - Psyr_2695 0.63 -0.5
3,272,309 + Psyr_2695 0.63 +2.4
3,272,486 + +0.3
3,272,487 - +0.5
3,272,580 + -2.4
3,272,580 + -2.7
3,272,581 - +1.1
3,272,581 - -3.2
3,272,581 - +1.2
3,272,584 + -0.5
3,272,584 + +0.1
3,272,584 + -2.9
3,272,584 + +0.5
3,272,585 - +2.1
3,272,585 - +0.7
3,272,585 - +0.9
3,272,585 - +0.4
3,272,585 - -0.4
3,272,585 - -0.0
3,272,585 - +0.2

Or see this region's nucleotide sequence