Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2603 and Psyr_2604 are separated by 245 nucleotides Psyr_2604 and Psyr_2605 are separated by 96 nucleotides Psyr_2605 and Psyr_2606 are separated by 451 nucleotides
Psyr_2603: Psyr_2603 - Secretion protein HlyD, at 3,057,159 to 3,058,328
_2603
Psyr_2604: Psyr_2604 - conserved hypothetical protein; putative membrane protein, at 3,058,574 to 3,059,179
_2604
Psyr_2605: Psyr_2605 - transposase, putative, at 3,059,276 to 3,059,773
_2605
Psyr_2606: Psyr_2606 - RND efflux system, outer membrane lipoprotein, NodT, at 3,060,225 to 3,061,661
_2606
Position (kb)
3059
3060 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3058.333 kb on - strand at 3058.346 kb on - strand at 3058.346 kb on - strand at 3058.423 kb on - strand at 3058.433 kb on + strand at 3058.433 kb on + strand at 3058.433 kb on + strand at 3058.445 kb on + strand at 3058.445 kb on + strand at 3058.445 kb on + strand at 3058.446 kb on - strand at 3058.446 kb on - strand at 3058.446 kb on - strand at 3058.446 kb on - strand at 3058.446 kb on - strand at 3058.499 kb on + strand at 3058.499 kb on + strand at 3058.528 kb on - strand at 3058.567 kb on - strand at 3058.583 kb on + strand at 3058.583 kb on + strand at 3058.583 kb on + strand at 3058.583 kb on + strand at 3058.583 kb on + strand at 3058.583 kb on + strand at 3058.583 kb on + strand at 3058.584 kb on - strand at 3058.584 kb on - strand at 3058.584 kb on - strand at 3058.584 kb on - strand at 3058.584 kb on - strand at 3058.586 kb on + strand at 3058.587 kb on - strand at 3058.675 kb on + strand, within Psyr_2604 at 3058.676 kb on - strand, within Psyr_2604 at 3058.715 kb on + strand, within Psyr_2604 at 3058.715 kb on + strand, within Psyr_2604 at 3058.715 kb on + strand, within Psyr_2604 at 3058.716 kb on - strand, within Psyr_2604 at 3058.716 kb on - strand, within Psyr_2604 at 3058.716 kb on - strand, within Psyr_2604 at 3058.769 kb on + strand, within Psyr_2604 at 3058.769 kb on + strand, within Psyr_2604 at 3058.769 kb on + strand, within Psyr_2604 at 3058.770 kb on - strand, within Psyr_2604 at 3058.820 kb on + strand, within Psyr_2604 at 3058.820 kb on + strand, within Psyr_2604 at 3058.820 kb on + strand, within Psyr_2604 at 3059.071 kb on - strand, within Psyr_2604 at 3059.148 kb on - strand at 3059.219 kb on - strand at 3059.222 kb on + strand at 3059.222 kb on + strand at 3059.222 kb on + strand at 3059.222 kb on + strand at 3059.223 kb on - strand at 3059.223 kb on - strand at 3059.223 kb on - strand at 3059.223 kb on - strand at 3059.226 kb on + strand at 3059.226 kb on + strand at 3059.226 kb on + strand at 3059.226 kb on + strand at 3059.226 kb on + strand at 3059.226 kb on + strand at 3059.226 kb on + strand at 3059.226 kb on + strand at 3059.227 kb on - strand at 3059.227 kb on - strand at 3059.227 kb on - strand at 3059.230 kb on + strand at 3059.230 kb on + strand at 3059.246 kb on + strand at 3059.246 kb on + strand at 3059.246 kb on + strand at 3059.246 kb on + strand at 3059.246 kb on + strand at 3059.246 kb on + strand at 3059.247 kb on - strand at 3059.247 kb on - strand at 3059.247 kb on - strand at 3059.247 kb on - strand at 3059.292 kb on + strand at 3059.292 kb on + strand at 3059.293 kb on - strand at 3059.293 kb on - strand at 3059.293 kb on - strand at 3059.293 kb on - strand at 3059.481 kb on + strand, within Psyr_2605 at 3059.481 kb on + strand, within Psyr_2605 at 3059.482 kb on - strand, within Psyr_2605 at 3059.482 kb on - strand, within Psyr_2605 at 3059.605 kb on + strand, within Psyr_2605 at 3059.605 kb on + strand, within Psyr_2605 at 3059.605 kb on + strand, within Psyr_2605 at 3059.606 kb on - strand, within Psyr_2605 at 3059.606 kb on - strand, within Psyr_2605 at 3059.656 kb on - strand, within Psyr_2605 at 3059.673 kb on + strand, within Psyr_2605 at 3059.674 kb on - strand, within Psyr_2605 at 3059.674 kb on - strand, within Psyr_2605 at 3059.752 kb on + strand at 3059.752 kb on + strand at 3059.752 kb on + strand at 3059.752 kb on + strand at 3059.752 kb on + strand at 3059.752 kb on + strand at 3059.753 kb on - strand at 3059.753 kb on - strand at 3059.772 kb on - strand at 3059.792 kb on + strand at 3059.793 kb on - strand at 3060.064 kb on - strand at 3060.185 kb on + strand at 3060.185 kb on + strand at 3060.186 kb on - strand at 3060.186 kb on - strand at 3060.186 kb on - strand at 3060.206 kb on + strand at 3060.207 kb on - strand at 3060.207 kb on - strand at 3060.207 kb on - strand at 3060.242 kb on + strand at 3060.242 kb on + strand at 3060.242 kb on + strand at 3060.242 kb on + strand at 3060.242 kb on + strand at 3060.243 kb on - strand at 3060.243 kb on - strand at 3060.339 kb on + strand at 3060.412 kb on + strand, within Psyr_2606 at 3060.415 kb on + strand, within Psyr_2606 at 3060.415 kb on + strand, within Psyr_2606 at 3060.416 kb on - strand, within Psyr_2606 at 3060.416 kb on - strand, within Psyr_2606 at 3060.466 kb on + strand, within Psyr_2606 at 3060.466 kb on + strand, within Psyr_2606 at 3060.466 kb on + strand, within Psyr_2606 at 3060.467 kb on - strand, within Psyr_2606 at 3060.529 kb on + strand, within Psyr_2606 at 3060.533 kb on + strand, within Psyr_2606 at 3060.534 kb on - strand, within Psyr_2606 at 3060.534 kb on - strand, within Psyr_2606 at 3060.543 kb on + strand, within Psyr_2606 at 3060.543 kb on + strand, within Psyr_2606 at 3060.543 kb on + strand, within Psyr_2606 at 3060.543 kb on + strand, within Psyr_2606 at 3060.543 kb on + strand, within Psyr_2606 at 3060.544 kb on - strand, within Psyr_2606 at 3060.544 kb on - strand, within Psyr_2606 at 3060.544 kb on - strand, within Psyr_2606 at 3060.544 kb on - strand, within Psyr_2606 at 3060.544 kb on - strand, within Psyr_2606 at 3060.545 kb on + strand, within Psyr_2606 at 3060.545 kb on + strand, within Psyr_2606 at 3060.545 kb on + strand, within Psyr_2606 at 3060.545 kb on + strand, within Psyr_2606 at 3060.546 kb on - strand, within Psyr_2606 at 3060.702 kb on - strand, within Psyr_2606
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 3,058,333 - -0.2 3,058,346 - -0.5 3,058,346 - -3.0 3,058,423 - -0.8 3,058,433 + -0.4 3,058,433 + -0.8 3,058,433 + -0.1 3,058,445 + -0.7 3,058,445 + -1.8 3,058,445 + +0.8 3,058,446 - +1.0 3,058,446 - +1.2 3,058,446 - +0.2 3,058,446 - +1.0 3,058,446 - -0.1 3,058,499 + +1.0 3,058,499 + -1.8 3,058,528 - +0.2 3,058,567 - -2.4 3,058,583 + +0.1 3,058,583 + -0.0 3,058,583 + +0.9 3,058,583 + +0.1 3,058,583 + -0.3 3,058,583 + -0.2 3,058,583 + -1.2 3,058,584 - +0.5 3,058,584 - -1.8 3,058,584 - -0.4 3,058,584 - +0.4 3,058,584 - -0.0 3,058,586 + +1.6 3,058,587 - -0.8 3,058,675 + Psyr_2604 0.17 +0.9 3,058,676 - Psyr_2604 0.17 +1.2 3,058,715 + Psyr_2604 0.23 +2.6 3,058,715 + Psyr_2604 0.23 +0.3 3,058,715 + Psyr_2604 0.23 +1.3 3,058,716 - Psyr_2604 0.23 +1.8 3,058,716 - Psyr_2604 0.23 +1.2 3,058,716 - Psyr_2604 0.23 -1.0 3,058,769 + Psyr_2604 0.32 -2.3 3,058,769 + Psyr_2604 0.32 -2.4 3,058,769 + Psyr_2604 0.32 -0.5 3,058,770 - Psyr_2604 0.32 -2.1 3,058,820 + Psyr_2604 0.41 +0.9 3,058,820 + Psyr_2604 0.41 -0.1 3,058,820 + Psyr_2604 0.41 -0.3 3,059,071 - Psyr_2604 0.82 +0.3 3,059,148 - +0.1 3,059,219 - -0.1 3,059,222 + -1.7 3,059,222 + -0.2 3,059,222 + -0.9 3,059,222 + +0.7 3,059,223 - -1.6 3,059,223 - -0.1 3,059,223 - -0.3 3,059,223 - -2.0 3,059,226 + -1.1 3,059,226 + +0.6 3,059,226 + +2.9 3,059,226 + +0.8 3,059,226 + -0.8 3,059,226 + -0.5 3,059,226 + -0.9 3,059,226 + -0.0 3,059,227 - +0.6 3,059,227 - +2.8 3,059,227 - +0.7 3,059,230 + +2.1 3,059,230 + +0.1 3,059,246 + -1.5 3,059,246 + -2.4 3,059,246 + +0.1 3,059,246 + +0.5 3,059,246 + -1.4 3,059,246 + +0.5 3,059,247 - -0.5 3,059,247 - +1.0 3,059,247 - -0.8 3,059,247 - -0.1 3,059,292 + -0.3 3,059,292 + -1.1 3,059,293 - +0.4 3,059,293 - -0.4 3,059,293 - +1.6 3,059,293 - +0.4 3,059,481 + Psyr_2605 0.41 +1.9 3,059,481 + Psyr_2605 0.41 +2.8 3,059,482 - Psyr_2605 0.41 +0.3 3,059,482 - Psyr_2605 0.41 -1.6 3,059,605 + Psyr_2605 0.66 -0.4 3,059,605 + Psyr_2605 0.66 +1.0 3,059,605 + Psyr_2605 0.66 +1.5 3,059,606 - Psyr_2605 0.66 +2.8 3,059,606 - Psyr_2605 0.66 -1.4 3,059,656 - Psyr_2605 0.76 -0.3 3,059,673 + Psyr_2605 0.80 +0.3 3,059,674 - Psyr_2605 0.80 +1.8 3,059,674 - Psyr_2605 0.80 -0.8 3,059,752 + +0.9 3,059,752 + +0.3 3,059,752 + +1.2 3,059,752 + +1.2 3,059,752 + -0.8 3,059,752 + -1.1 3,059,753 - -0.8 3,059,753 - -0.1 3,059,772 - +0.2 3,059,792 + +0.2 3,059,793 - -0.4 3,060,064 - -0.3 3,060,185 + -1.1 3,060,185 + -1.3 3,060,186 - +0.2 3,060,186 - -0.2 3,060,186 - -1.7 3,060,206 + -0.4 3,060,207 - -0.9 3,060,207 - -0.8 3,060,207 - +0.7 3,060,242 + +1.2 3,060,242 + +0.4 3,060,242 + -2.3 3,060,242 + +1.2 3,060,242 + +1.8 3,060,243 - -0.1 3,060,243 - -0.9 3,060,339 + -0.4 3,060,412 + Psyr_2606 0.13 -2.0 3,060,415 + Psyr_2606 0.13 -1.8 3,060,415 + Psyr_2606 0.13 +2.2 3,060,416 - Psyr_2606 0.13 -1.7 3,060,416 - Psyr_2606 0.13 -0.0 3,060,466 + Psyr_2606 0.17 -0.6 3,060,466 + Psyr_2606 0.17 -0.3 3,060,466 + Psyr_2606 0.17 +0.5 3,060,467 - Psyr_2606 0.17 +0.6 3,060,529 + Psyr_2606 0.21 -0.1 3,060,533 + Psyr_2606 0.21 +0.7 3,060,534 - Psyr_2606 0.22 +0.2 3,060,534 - Psyr_2606 0.22 -0.2 3,060,543 + Psyr_2606 0.22 -1.1 3,060,543 + Psyr_2606 0.22 -1.1 3,060,543 + Psyr_2606 0.22 +1.6 3,060,543 + Psyr_2606 0.22 +0.0 3,060,543 + Psyr_2606 0.22 -0.4 3,060,544 - Psyr_2606 0.22 +2.1 3,060,544 - Psyr_2606 0.22 +0.1 3,060,544 - Psyr_2606 0.22 -0.5 3,060,544 - Psyr_2606 0.22 -0.5 3,060,544 - Psyr_2606 0.22 +0.5 3,060,545 + Psyr_2606 0.22 +0.8 3,060,545 + Psyr_2606 0.22 +1.4 3,060,545 + Psyr_2606 0.22 -0.6 3,060,545 + Psyr_2606 0.22 -0.9 3,060,546 - Psyr_2606 0.22 +0.2 3,060,702 - Psyr_2606 0.33 +1.2
Or see this region's nucleotide sequence