Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2582

Experiment: KB with Ginkgolide A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Ginkgolide A 10 mM
3,022,547	-				-0.2
3,022,757	-		Psyr_2581	0.26	-0.8
3,022,931	+		Psyr_2581	0.44	-0.7
3,022,958	-		Psyr_2581	0.47	-0.3
3,022,958	-		Psyr_2581	0.47	+0.2
3,022,969	+		Psyr_2581	0.48	+1.6
3,022,969	+		Psyr_2581	0.48	+0.6
3,022,970	-		Psyr_2581	0.48	-0.2
3,022,970	-		Psyr_2581	0.48	+1.2
3,023,227	+		Psyr_2581	0.75	-0.3
3,023,227	+		Psyr_2581	0.75	-1.1
3,023,227	+		Psyr_2581	0.75	+0.0
3,023,228	-		Psyr_2581	0.75	-2.0
3,023,228	-		Psyr_2581	0.75	+0.5
3,023,462	+				-0.4
3,023,469	+				+1.3
3,023,509	+				+0.8
3,023,509	+				-0.6
3,023,510	-				-1.5
3,023,510	-				+3.8
3,023,524	+				-0.9
3,023,540	+				-2.3
3,023,860	-		Psyr_2582	0.13	-2.1
3,024,042	+		Psyr_2582	0.21	+0.6
3,024,042	+		Psyr_2582	0.21	-2.6
3,024,042	+		Psyr_2582	0.21	-1.3
3,024,042	+		Psyr_2582	0.21	-1.6
3,024,043	-		Psyr_2582	0.21	-1.6
3,024,043	-		Psyr_2582	0.21	-1.1
3,024,043	-		Psyr_2582	0.21	+1.2
3,024,222	+		Psyr_2582	0.28	-0.4
3,024,222	+		Psyr_2582	0.28	-2.1
3,024,378	+		Psyr_2582	0.35	-0.8
3,024,379	-		Psyr_2582	0.35	-0.8
3,024,379	-		Psyr_2582	0.35	-0.9
3,024,379	-		Psyr_2582	0.35	-1.2
3,024,379	-		Psyr_2582	0.35	-2.5
3,024,415	+		Psyr_2582	0.36	-3.3
3,024,415	+		Psyr_2582	0.36	-0.8
3,024,416	-		Psyr_2582	0.36	+0.6
3,024,416	-		Psyr_2582	0.36	+0.2
3,024,666	+		Psyr_2582	0.47	+0.5
3,024,666	+		Psyr_2582	0.47	-0.2
3,024,666	+		Psyr_2582	0.47	-2.2
3,024,667	-		Psyr_2582	0.47	-0.7
3,024,667	-		Psyr_2582	0.47	+1.2
3,024,667	-		Psyr_2582	0.47	-1.4
3,024,667	-		Psyr_2582	0.47	-0.9
3,024,702	-		Psyr_2582	0.48	-0.7
3,024,727	-		Psyr_2582	0.49	-1.7
3,024,948	+		Psyr_2582	0.58	-3.5
3,024,949	-		Psyr_2582	0.58	-1.1
3,024,954	+		Psyr_2582	0.59	-1.4
3,024,955	-		Psyr_2582	0.59	-3.0
3,024,955	-		Psyr_2582	0.59	+0.6
3,024,955	-		Psyr_2582	0.59	-1.5
3,025,008	+		Psyr_2582	0.61	-0.6
3,025,066	-		Psyr_2582	0.63	-3.3
3,025,245	+		Psyr_2582	0.71	-1.0
3,025,246	-		Psyr_2582	0.71	-1.1
3,025,281	+		Psyr_2582	0.72	-1.7
3,025,281	+		Psyr_2582	0.72	-2.5
3,025,281	+		Psyr_2582	0.72	-1.1
3,025,282	-		Psyr_2582	0.72	-0.9
3,025,282	-		Psyr_2582	0.72	-0.7
3,025,386	+		Psyr_2582	0.77	-0.0
3,025,387	-		Psyr_2582	0.77	-2.3
3,025,387	-		Psyr_2582	0.77	-1.1
3,025,420	+		Psyr_2582	0.78	-2.9
3,025,443	+		Psyr_2582	0.79	+0.8
3,025,469	-		Psyr_2582	0.80	-1.0
3,025,563	+		Psyr_2582	0.84	-0.3
3,025,563	+		Psyr_2582	0.84	+0.3
3,025,563	+		Psyr_2582	0.84	-0.5
3,025,564	-		Psyr_2582	0.84	-0.0
3,025,564	-		Psyr_2582	0.84	-3.8
3,025,564	-		Psyr_2582	0.84	-0.4
3,025,564	-		Psyr_2582	0.84	-2.1
3,025,635	+		Psyr_2582	0.87	+0.4
3,025,635	+		Psyr_2582	0.87	-0.2
3,025,635	+		Psyr_2582	0.87	-1.4
3,025,636	-		Psyr_2582	0.87	-0.2
3,025,636	-		Psyr_2582	0.87	-1.0
3,025,636	-		Psyr_2582	0.87	-1.1
3,025,707	+		Psyr_2582	0.90	-1.1
3,025,708	-		Psyr_2582	0.90	-0.9
3,025,723	-				-0.1
3,025,774	+				-1.0
3,025,793	+				-0.4
3,025,793	+				-1.5
3,025,851	+				+0.8
3,025,851	+				-1.1
3,025,852	-				-0.6
3,025,852	-				-3.9
3,025,852	-				-0.7
3,025,852	-				-1.7
3,025,852	-				-0.6
3,025,852	-				-2.3
3,025,852	-				-0.6
3,025,854	+				-0.7
3,025,920	+				-0.5
3,025,920	+				+0.2
3,025,920	+				+0.9
3,025,921	-				+0.2
3,025,921	-				+0.7
3,025,921	-				-2.4
3,025,921	-				-3.1
3,025,921	-				-0.0
3,025,983	+				+1.0
3,025,983	+				+0.3
3,025,983	+				-0.3
3,025,983	+				+0.0
3,025,983	+				+0.9
3,025,984	-				-0.7
3,025,984	-				+0.4
3,025,984	-				-1.4
3,025,984	-				+0.5
3,025,984	-				+0.0
3,025,984	-				-1.6
3,025,984	-				-1.1
3,025,984	-				+1.2
3,025,984	-				-0.4
3,025,984	-				-0.8
3,025,985	+				-1.6
3,025,985	+				+0.8
3,025,985	+				+0.2
3,025,985	+				-1.5
3,025,986	-				-1.1
3,025,987	+				+0.6
3,025,987	+				-1.8
3,026,032	+				-0.1
3,026,035	+				-1.3
3,026,035	+				-0.2
3,026,036	-				-2.0
3,026,166	+				-1.4
3,026,167	-				+0.2
3,026,167	-				+1.0
3,026,326	+				+0.3
3,026,327	-				-0.7
3,026,329	+				+0.2
3,026,329	+				-0.0
3,026,330	-				+2.8
3,026,330	-				+1.3
3,026,330	-				+0.9
3,026,354	+				+0.3
3,026,354	+				-0.0
3,026,354	+				-1.0
3,026,389	-				-1.6
3,026,389	-				-0.4
3,026,397	-				-1.9
3,026,469	-		Psyr_2583	0.12	-0.8
3,026,652	-		Psyr_2583	0.26	+0.8
3,026,867	+		Psyr_2583	0.41	-0.3
3,026,868	-		Psyr_2583	0.41	-0.3
3,026,868	-		Psyr_2583	0.41	-0.0
3,026,918	+		Psyr_2583	0.45	+0.4
3,026,919	-		Psyr_2583	0.45	-0.6
3,026,921	+		Psyr_2583	0.45	-0.5
3,026,921	+		Psyr_2583	0.45	-0.1
3,026,921	+		Psyr_2583	0.45	-1.4
3,026,922	-		Psyr_2583	0.45	+0.1
3,026,922	-		Psyr_2583	0.45	+0.7