Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2550

Experiment: KB with Ginkgolide A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2549 and Psyr_2550 overlap by 4 nucleotidesPsyr_2550 and Psyr_2551 overlap by 4 nucleotides Psyr_2549: Psyr_2549 - hypothetical protein, at 2,963,117 to 2,964,187 _2549 Psyr_2550: Psyr_2550 - hypothetical protein, at 2,964,184 to 2,964,738 _2550 Psyr_2551: Psyr_2551 - acetylornithine aminotransferase apoenzyme, at 2,964,735 to 2,965,991 _2551 Position (kb) 2964 2965Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2963.242 kb on + strand, within Psyr_2549at 2963.243 kb on - strand, within Psyr_2549at 2963.254 kb on - strand, within Psyr_2549at 2963.254 kb on - strand, within Psyr_2549at 2963.282 kb on - strand, within Psyr_2549at 2963.283 kb on + strand, within Psyr_2549at 2963.284 kb on - strand, within Psyr_2549at 2963.284 kb on - strand, within Psyr_2549at 2963.284 kb on - strand, within Psyr_2549at 2963.284 kb on - strand, within Psyr_2549at 2963.284 kb on - strand, within Psyr_2549at 2963.284 kb on - strand, within Psyr_2549at 2963.284 kb on - strand, within Psyr_2549at 2963.284 kb on - strand, within Psyr_2549at 2963.284 kb on - strand, within Psyr_2549at 2963.284 kb on - strand, within Psyr_2549at 2963.284 kb on - strand, within Psyr_2549at 2963.292 kb on + strand, within Psyr_2549at 2963.293 kb on - strand, within Psyr_2549at 2963.342 kb on + strand, within Psyr_2549at 2963.343 kb on - strand, within Psyr_2549at 2963.495 kb on + strand, within Psyr_2549at 2963.543 kb on + strand, within Psyr_2549at 2963.667 kb on - strand, within Psyr_2549at 2963.934 kb on - strand, within Psyr_2549at 2964.107 kb on + strandat 2964.107 kb on + strandat 2964.107 kb on + strandat 2964.166 kb on + strandat 2964.245 kb on + strand, within Psyr_2550at 2964.245 kb on + strand, within Psyr_2550at 2964.245 kb on + strand, within Psyr_2550at 2964.245 kb on + strand, within Psyr_2550at 2964.245 kb on + strand, within Psyr_2550at 2964.245 kb on + strand, within Psyr_2550at 2964.246 kb on - strand, within Psyr_2550at 2964.246 kb on - strand, within Psyr_2550at 2964.246 kb on - strand, within Psyr_2550at 2964.246 kb on - strand, within Psyr_2550at 2964.246 kb on - strand, within Psyr_2550at 2964.246 kb on - strand, within Psyr_2550at 2964.246 kb on - strand, within Psyr_2550at 2964.317 kb on - strand, within Psyr_2550at 2964.317 kb on - strand, within Psyr_2550at 2964.317 kb on - strand, within Psyr_2550at 2964.735 kb on - strandat 2964.802 kb on - strandat 2964.833 kb on + strandat 2964.834 kb on - strandat 2965.095 kb on + strand, within Psyr_2551at 2965.096 kb on - strand, within Psyr_2551at 2965.224 kb on + strand, within Psyr_2551at 2965.224 kb on + strand, within Psyr_2551at 2965.225 kb on - strand, within Psyr_2551at 2965.561 kb on - strand, within Psyr_2551at 2965.618 kb on - strand, within Psyr_2551

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM
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2,963,242 + Psyr_2549 0.12 -1.1
2,963,243 - Psyr_2549 0.12 -0.4
2,963,254 - Psyr_2549 0.13 -1.3
2,963,254 - Psyr_2549 0.13 +0.7
2,963,282 - Psyr_2549 0.15 +0.3
2,963,283 + Psyr_2549 0.15 +1.8
2,963,284 - Psyr_2549 0.16 -0.4
2,963,284 - Psyr_2549 0.16 -2.6
2,963,284 - Psyr_2549 0.16 -0.1
2,963,284 - Psyr_2549 0.16 -1.8
2,963,284 - Psyr_2549 0.16 -1.1
2,963,284 - Psyr_2549 0.16 -1.0
2,963,284 - Psyr_2549 0.16 -1.8
2,963,284 - Psyr_2549 0.16 +0.5
2,963,284 - Psyr_2549 0.16 -0.9
2,963,284 - Psyr_2549 0.16 -0.5
2,963,284 - Psyr_2549 0.16 -1.2
2,963,292 + Psyr_2549 0.16 +1.9
2,963,293 - Psyr_2549 0.16 -0.1
2,963,342 + Psyr_2549 0.21 +0.1
2,963,343 - Psyr_2549 0.21 -2.5
2,963,495 + Psyr_2549 0.35 +1.2
2,963,543 + Psyr_2549 0.40 +0.2
2,963,667 - Psyr_2549 0.51 +0.3
2,963,934 - Psyr_2549 0.76 +0.8
2,964,107 + -0.1
2,964,107 + +2.2
2,964,107 + +0.6
2,964,166 + -1.0
2,964,245 + Psyr_2550 0.11 +0.7
2,964,245 + Psyr_2550 0.11 +3.3
2,964,245 + Psyr_2550 0.11 +0.0
2,964,245 + Psyr_2550 0.11 +0.7
2,964,245 + Psyr_2550 0.11 +0.8
2,964,245 + Psyr_2550 0.11 +1.6
2,964,246 - Psyr_2550 0.11 +1.6
2,964,246 - Psyr_2550 0.11 +0.6
2,964,246 - Psyr_2550 0.11 -0.6
2,964,246 - Psyr_2550 0.11 -0.2
2,964,246 - Psyr_2550 0.11 +0.6
2,964,246 - Psyr_2550 0.11 +1.9
2,964,246 - Psyr_2550 0.11 -0.1
2,964,317 - Psyr_2550 0.24 -1.6
2,964,317 - Psyr_2550 0.24 +0.9
2,964,317 - Psyr_2550 0.24 -1.4
2,964,735 - +0.1
2,964,802 - +0.6
2,964,833 + -0.6
2,964,834 - -0.1
2,965,095 + Psyr_2551 0.29 -1.2
2,965,096 - Psyr_2551 0.29 +1.8
2,965,224 + Psyr_2551 0.39 +1.6
2,965,224 + Psyr_2551 0.39 +0.2
2,965,225 - Psyr_2551 0.39 +2.2
2,965,561 - Psyr_2551 0.66 -1.2
2,965,618 - Psyr_2551 0.70 -1.9

Or see this region's nucleotide sequence