Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2353

Experiment: KB with Ginkgolide A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Ginkgolide A 10 mM
2,727,631	+				-1.2
2,727,631	+				-0.1
2,727,632	-				-2.7
2,727,632	-				+0.9
2,727,632	-				-0.6
2,727,702	+				-0.4
2,727,743	+				-0.4
2,727,926	+				+0.7
2,727,926	+				+0.6
2,727,949	+				-0.2
2,727,950	-				+1.0
2,728,003	+		Psyr_2352	0.10	+0.3
2,728,075	+		Psyr_2352	0.24	+0.7
2,728,075	+		Psyr_2352	0.24	+0.0
2,728,075	+		Psyr_2352	0.24	+1.4
2,728,075	+		Psyr_2352	0.24	-0.4
2,728,076	-		Psyr_2352	0.24	+2.5
2,728,076	-		Psyr_2352	0.24	-0.1
2,728,225	+		Psyr_2352	0.52	+0.0
2,728,225	+		Psyr_2352	0.52	-0.8
2,728,378	+		Psyr_2352	0.81	-1.5
2,728,378	+		Psyr_2352	0.81	+0.2
2,728,378	+		Psyr_2352	0.81	+0.8
2,728,378	+		Psyr_2352	0.81	-2.8
2,728,379	-		Psyr_2352	0.82	-2.2
2,728,379	-		Psyr_2352	0.82	+0.9
2,728,379	-		Psyr_2352	0.82	-0.4
2,728,379	-		Psyr_2352	0.82	-2.1
2,728,475	+				+0.8
2,728,475	+				+0.2
2,728,495	+				+0.4
2,728,495	+				+0.3
2,728,495	+				+1.0
2,728,496	-				+0.3
2,728,530	+				-2.4
2,728,530	+				-0.3
2,728,531	-				+0.3
2,728,531	-				-0.2
2,728,531	-				-0.4
2,728,565	+				-0.4
2,728,565	+				-0.9
2,728,565	+				-1.2
2,728,565	+				-0.3
2,728,566	-				-1.3
2,728,566	-				+0.5
2,728,566	-				+0.7
2,728,566	-				+0.2
2,728,566	-				+0.3
2,728,570	+				+0.6
2,728,571	-				+1.8
2,728,571	-				+0.6
2,728,571	-				+1.6
2,728,574	+				-0.9
2,728,575	-				-0.2
2,728,934	+		Psyr_2353	0.28	-0.7
2,728,987	+		Psyr_2353	0.32	+0.2
2,728,987	+		Psyr_2353	0.32	+1.0
2,728,988	-		Psyr_2353	0.32	-1.2
2,728,988	-		Psyr_2353	0.32	+1.3
2,728,991	+		Psyr_2353	0.33	+2.2
2,728,991	+		Psyr_2353	0.33	+1.3
2,728,991	+		Psyr_2353	0.33	-1.6
2,728,991	+		Psyr_2353	0.33	+0.0
2,728,991	+		Psyr_2353	0.33	-1.3
2,728,992	-		Psyr_2353	0.33	-1.8
2,728,992	-		Psyr_2353	0.33	-2.6
2,728,992	-		Psyr_2353	0.33	-0.2
2,728,992	-		Psyr_2353	0.33	+1.0
2,728,992	-		Psyr_2353	0.33	-1.4
2,728,992	-		Psyr_2353	0.33	-0.6
2,729,287	+		Psyr_2353	0.57	-0.6
2,729,362	+		Psyr_2353	0.63	-2.3
2,729,362	+		Psyr_2353	0.63	-0.5
2,729,362	+		Psyr_2353	0.63	-0.8
2,729,362	+		Psyr_2353	0.63	+0.4
2,729,362	+		Psyr_2353	0.63	+0.2
2,729,362	+		Psyr_2353	0.63	-0.9
2,729,362	+		Psyr_2353	0.63	+0.2
2,729,362	+		Psyr_2353	0.63	+1.6
2,729,363	-		Psyr_2353	0.63	+0.4
2,729,408	+		Psyr_2353	0.67	+0.5
2,729,408	+		Psyr_2353	0.67	+0.6
2,729,408	+		Psyr_2353	0.67	-2.0
2,729,409	-		Psyr_2353	0.67	-0.7
2,729,490	-		Psyr_2353	0.73	+2.7
2,729,490	-		Psyr_2353	0.73	-0.2
2,729,557	+		Psyr_2353	0.79	+0.6
2,729,558	-		Psyr_2353	0.79	-2.5
2,729,558	-		Psyr_2353	0.79	-0.3
2,729,615	+		Psyr_2353	0.83	+0.0
2,729,615	+		Psyr_2353	0.83	+0.7
2,729,615	+		Psyr_2353	0.83	-2.1
2,729,616	-		Psyr_2353	0.84	-1.7
2,729,674	-		Psyr_2353	0.88	-2.9
2,729,763	-				+1.0
2,729,796	+				-1.1
2,729,797	-				-1.0
2,729,800	+				+0.5
2,729,800	+				-0.8
2,729,800	+				-0.2
2,729,801	-				+1.2
2,729,801	-				-2.0
2,729,801	-				-2.4
2,729,801	-				-0.1
2,729,801	-				-0.1
2,729,801	-				+0.5
2,729,801	-				-1.2
2,729,801	-				-2.9
2,729,841	+				-1.7
2,729,841	+				-0.1
2,729,904	+				+0.2
2,729,951	-				+1.4
2,729,962	+				+1.6
2,730,308	+		Psyr_2354	0.49	-2.8
2,730,308	+		Psyr_2354	0.49	-0.0
2,730,318	-		Psyr_2354	0.50	+1.9
2,730,318	-		Psyr_2354	0.50	-0.0
2,730,350	+		Psyr_2354	0.54	-2.7
2,730,350	+		Psyr_2354	0.54	-0.1
2,730,351	-		Psyr_2354	0.54	-0.5
2,730,391	-		Psyr_2354	0.58	-0.7
2,730,395	+		Psyr_2354	0.59	-0.2
2,730,396	-		Psyr_2354	0.59	-0.4
2,730,398	+		Psyr_2354	0.59	+0.6
2,730,398	+		Psyr_2354	0.59	-0.4
2,730,399	-		Psyr_2354	0.59	-0.8
2,730,602	+		Psyr_2354	0.84	-0.7
2,730,603	-		Psyr_2354	0.84	-1.6
2,730,674	+				-0.2
2,730,674	+				-1.4
2,730,675	-				+0.7
2,730,707	-				-1.3
2,730,707	-				+1.5
2,730,777	+				-0.8
2,730,778	-				+1.2
2,730,778	-				-1.2