Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2341

Experiment: KB with Ginkgolide A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Ginkgolide A 10 mM
2,716,406	+				+0.4
2,716,407	-				+0.4
2,716,442	-		Psyr_2339	0.16	+0.2
2,716,442	-		Psyr_2339	0.16	+0.5
2,716,442	-		Psyr_2339	0.16	-0.2
2,716,454	+		Psyr_2339	0.21	+0.2
2,716,454	+		Psyr_2339	0.21	-0.3
2,716,481	+		Psyr_2339	0.33	+1.0
2,716,482	-		Psyr_2339	0.34	-0.7
2,716,620	+				+0.3
2,716,621	-				-1.5
2,716,621	-				-0.1
2,716,621	-				+0.4
2,716,621	-				-0.8
2,716,621	-				+0.2
2,716,632	+				+1.6
2,716,632	+				-2.8
2,716,632	+				+0.5
2,716,632	+				-1.2
2,716,633	-				+1.4
2,716,633	-				-1.2
2,716,633	-				-1.8
2,716,633	-				+0.4
2,716,633	-				-1.8
2,716,795	+				-0.8
2,716,795	+				-1.8
2,716,796	-				-2.5
2,716,796	-				-0.3
2,717,021	+		Psyr_2340	0.69	-1.5
2,717,021	+		Psyr_2340	0.69	+0.1
2,717,021	+		Psyr_2340	0.69	+1.2
2,717,021	+		Psyr_2340	0.69	+0.2
2,717,083	-		Psyr_2340	0.86	-1.0
2,717,089	+		Psyr_2340	0.87	-0.5
2,717,089	+		Psyr_2340	0.87	+0.5
2,717,278	-				+0.5
2,717,278	-				+1.0
2,717,344	+		Psyr_2341	0.31	-1.2
2,717,345	-		Psyr_2341	0.32	-3.1
2,717,345	-		Psyr_2341	0.32	-1.5
2,717,347	+		Psyr_2341	0.32	-1.3
2,717,348	-		Psyr_2341	0.33	+0.2
2,717,348	-		Psyr_2341	0.33	-0.3
2,717,348	-		Psyr_2341	0.33	-1.8
2,717,452	+		Psyr_2341	0.70	+0.6
2,717,452	+		Psyr_2341	0.70	-1.2
2,717,452	+		Psyr_2341	0.70	-0.2
2,717,452	+		Psyr_2341	0.70	-0.8
2,717,452	+		Psyr_2341	0.70	-2.2
2,717,453	-		Psyr_2341	0.70	+0.1
2,717,453	-		Psyr_2341	0.70	+1.2
2,717,453	-		Psyr_2341	0.70	-0.7
2,717,542	-				+0.4
2,717,542	-				-0.3
2,717,628	+				-0.6
2,717,629	-				+0.3
2,717,647	-				+1.4
2,717,864	+				-0.7
2,717,865	-				+0.5
2,717,865	-				-0.9
2,717,867	+				-1.2
2,717,867	+				+0.5
2,717,868	-				-1.1
2,717,881	-				-0.4
2,717,891	+				-0.3
2,717,891	+				-1.0
2,717,891	+				+2.7
2,717,891	+				+2.5
2,717,892	-				+1.3
2,717,892	-				+3.7
2,717,902	+				-0.9
2,717,935	+				-1.0
2,717,935	+				+1.4
2,717,935	+				-1.7
2,717,935	+				-0.5
2,717,936	-				+0.3
2,717,936	-				-0.8
2,717,941	+				+1.0
2,718,039	+				+0.1
2,718,040	-				+0.2
2,718,040	-				-2.3
2,718,040	-				+1.4
2,718,040	-				+0.7
2,718,043	+				-0.7
2,718,044	-				+0.3
2,718,058	+				+0.4
2,718,131	-				+0.2
2,718,131	-				-0.2
2,718,131	-				+0.2
2,718,131	-				-0.1