Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2105

Experiment: KB with Ginkgolide A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Ginkgolide A 10 mM
2,455,540	+		Psyr_2103	0.74	+0.5
2,455,541	-		Psyr_2103	0.74	+2.3
2,455,578	-		Psyr_2103	0.77	+0.0
2,455,673	+		Psyr_2103	0.84	-0.2
2,455,674	-		Psyr_2103	0.84	-4.0
2,455,745	+				-0.1
2,455,820	+				+1.3
2,455,820	+				-1.1
2,455,820	+				+0.3
2,455,820	+				+0.5
2,455,821	-				-2.1
2,455,821	-				+0.1
2,455,821	-				-2.2
2,455,821	-				-1.3
2,456,016	+		Psyr_2104	0.15	-0.9
2,456,016	+		Psyr_2104	0.15	-1.2
2,456,016	+		Psyr_2104	0.15	+0.5
2,456,016	+		Psyr_2104	0.15	+0.3
2,456,016	+		Psyr_2104	0.15	-0.2
2,456,016	+		Psyr_2104	0.15	-2.0
2,456,016	+		Psyr_2104	0.15	-0.9
2,456,016	+		Psyr_2104	0.15	-1.1
2,456,016	+		Psyr_2104	0.15	-0.8
2,456,017	-		Psyr_2104	0.16	+0.6
2,456,017	-		Psyr_2104	0.16	+1.8
2,456,017	-		Psyr_2104	0.16	-0.9
2,456,205	+		Psyr_2104	0.48	-1.9
2,456,205	+		Psyr_2104	0.48	-0.6
2,456,206	-		Psyr_2104	0.48	+0.2
2,456,208	-		Psyr_2104	0.49	+0.3
2,456,208	-		Psyr_2104	0.49	+1.7
2,456,208	-		Psyr_2104	0.49	+0.3
2,456,208	-		Psyr_2104	0.49	-0.1
2,456,208	-		Psyr_2104	0.49	-0.6
2,456,437	+		Psyr_2104	0.89	-2.0
2,456,484	+				+2.1
2,456,485	-				-0.4
2,456,493	+				-1.0
2,456,506	+				-0.2
2,456,506	+				+2.1
2,456,507	-				-1.1
2,456,507	-				-0.4
2,456,570	+				-0.6
2,456,570	+				-0.9
2,456,571	-				-0.4
2,456,683	+		Psyr_2105	0.14	-1.3
2,456,798	-		Psyr_2105	0.23	-0.1
2,456,995	-		Psyr_2105	0.39	-2.4
2,457,266	-		Psyr_2105	0.62	-1.2
2,457,268	+		Psyr_2105	0.62	-0.4
2,457,269	-		Psyr_2105	0.62	-0.9
2,457,481	+		Psyr_2105	0.80	-1.8
2,457,799	+				+1.6
2,457,800	-				-0.3
2,457,800	-				-1.9
2,457,800	-				+2.4
2,457,800	-				+2.5
2,457,801	+				+0.5
2,457,801	+				+1.7
2,457,801	+				-0.1
2,457,801	+				-3.1
2,457,801	+				-0.5
2,457,801	+				-1.1
2,457,801	+				-1.4
2,457,801	+				+0.6
2,457,802	-				+0.3
2,457,802	-				+0.1
2,457,802	-				-0.6
2,457,802	-				+0.1
2,457,802	-				+0.3
2,457,802	-				+2.7
2,457,802	-				+3.1
2,457,802	-				+1.1
2,457,803	+				+0.3
2,457,803	+				+0.6
2,457,803	+				-0.3
2,457,803	+				+0.7
2,457,803	+				+0.9
2,457,803	+				-0.2
2,457,803	+				+0.4
2,457,803	+				+2.3
2,457,803	+				+0.2
2,457,803	+				+0.1
2,457,803	+				+0.1
2,457,803	+				+0.5
2,457,803	+				-0.8
2,457,803	+				-0.0
2,457,803	+				-0.5
2,457,803	+				-3.0
2,457,803	+				-0.3
2,457,803	+				+0.5
2,457,803	+				-1.1
2,457,803	+				+0.9
2,457,804	-				+1.7
2,457,804	-				+1.1
2,457,804	-				+3.1
2,457,804	-				+0.7
2,457,804	-				-2.5
2,457,804	-				+2.1
2,457,804	-				+0.9
2,457,804	-				+1.5
2,457,804	-				+0.5
2,457,804	-				+0.6
2,457,804	-				-2.6
2,457,804	-				+0.3
2,457,804	-				+1.1
2,457,804	-				+1.6
2,457,804	-				+2.1
2,457,804	-				+1.6
2,457,804	-				+0.2
2,457,804	-				-0.1
2,457,804	-				+1.6
2,457,804	-				-0.7
2,457,804	-				-0.8
2,457,804	-				-2.9
2,457,804	-				+0.3
2,457,836	+				-1.4
2,457,923	-				-0.4
2,457,923	-				-1.7
2,457,977	+				-0.8
2,457,977	+				+1.2
2,457,977	+				-1.0
2,457,977	+				+0.2
2,457,977	+				-0.4
2,457,977	+				+0.7
2,457,977	+				+0.4
2,457,977	+				+0.4
2,457,977	+				+2.7
2,457,978	-				+0.1
2,457,978	-				+0.8
2,457,978	-				+3.6
2,457,978	-				+2.3
2,457,978	-				+2.2
2,457,978	-				+1.3
2,457,978	-				+1.1
2,457,979	+				-0.1
2,457,979	+				+4.1
2,457,979	+				+1.0
2,457,979	+				-1.1
2,457,979	+				-0.2
2,457,979	+				-0.8
2,457,980	-				+0.3
2,457,980	-				-1.2
2,457,980	-				-0.5
2,457,980	-				+1.1
2,457,980	-				+1.1
2,457,980	-				-3.4
2,457,980	-				+0.3
2,457,981	+				-0.2
2,458,078	+				-0.9
2,458,079	-				+0.8
2,458,079	-				-0.5
2,458,079	-				-0.5
2,458,079	-				-0.5
2,458,079	-				+0.3
2,458,147	+				-1.9
2,458,147	+				-0.2
2,458,147	+				-0.8
2,458,147	+				+0.7
2,458,147	+				-2.0
2,458,148	-				-1.4
2,458,149	+				+1.3
2,458,195	+				+3.2