Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2014

Experiment: KB with Ginkgolide A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Ginkgolide A 10 mM
2,337,734	+				-1.1
2,337,734	+				-1.4
2,337,734	+				-0.3
2,337,735	-				-2.7
2,337,735	-				-0.6
2,337,744	+				-0.7
2,337,779	-				+0.1
2,338,122	+		Psyr_2014	0.68	+0.9
2,338,122	+		Psyr_2014	0.68	+2.0
2,338,124	+		Psyr_2014	0.68	-0.2
2,338,124	+		Psyr_2014	0.68	+0.8
2,338,125	-		Psyr_2014	0.68	+4.0
2,338,125	-		Psyr_2014	0.68	-1.8
2,338,125	-		Psyr_2014	0.68	+1.0
2,338,125	-		Psyr_2014	0.68	-0.3
2,338,314	+				+0.4
2,338,315	-				-0.2
2,338,315	-				+1.6
2,338,315	-				-0.1
2,338,315	-				-0.5
2,338,315	-				-1.4
2,338,328	+				-1.0
2,338,346	+				+1.0
2,338,389	-				+1.5
2,338,521	+				-0.9
2,338,521	+				-0.5
2,338,522	-				-1.3
2,338,522	-				+1.6
2,338,522	-				-1.5
2,338,583	+				+4.2
2,338,583	+				-0.6
2,338,701	+				-1.0
2,338,702	-				+0.4
2,338,728	+				+0.2
2,338,728	+				+2.0
2,338,728	+				+0.8
2,338,728	+				-0.3
2,338,728	+				-0.1
2,338,728	+				-0.9
2,338,729	-				-0.2
2,338,729	-				+0.4
2,338,729	-				+0.8
2,338,729	-				-0.6
2,338,729	-				-0.4
2,338,729	-				-1.4
2,338,729	-				-2.7
2,338,729	-				-0.6
2,338,729	-				+0.7
2,338,874	+		Psyr_2015	0.20	+1.4
2,338,979	+		Psyr_2015	0.28	+1.9
2,338,991	+		Psyr_2015	0.29	-0.1
2,338,991	+		Psyr_2015	0.29	-0.6
2,338,991	+		Psyr_2015	0.29	+2.0
2,338,992	-		Psyr_2015	0.29	-2.0
2,338,992	-		Psyr_2015	0.29	-1.7
2,339,187	-		Psyr_2015	0.44	+0.5