Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1918

Experiment: KB with Ginkgolide A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Ginkgolide A 10 mM
2,190,585	-				-0.7
2,190,585	-				-0.1
2,190,585	-				+2.8
2,190,629	+				-1.0
2,190,632	-				-0.3
2,190,672	+				-0.9
2,190,673	-				+1.6
2,190,719	+		Psyr_1916	0.12	+1.0
2,190,834	+		Psyr_1916	0.38	+0.2
2,190,834	+		Psyr_1916	0.38	+0.6
2,190,834	+		Psyr_1916	0.38	+1.2
2,190,834	+		Psyr_1916	0.38	+1.0
2,190,835	-		Psyr_1916	0.39	-0.4
2,190,835	-		Psyr_1916	0.39	+1.0
2,190,835	-		Psyr_1916	0.39	-1.6
2,190,835	-		Psyr_1916	0.39	-0.3
2,191,054	+		Psyr_1916	0.88	-0.4
2,191,054	+		Psyr_1916	0.88	+4.2
2,191,054	+		Psyr_1916	0.88	+2.0
2,191,055	-		Psyr_1916	0.88	+0.2
2,191,055	-		Psyr_1916	0.88	+1.4
2,191,055	-		Psyr_1916	0.88	+0.0
2,191,055	-		Psyr_1916	0.88	+1.2
2,191,055	-		Psyr_1916	0.88	-0.8
2,191,055	-		Psyr_1916	0.88	-0.4
2,191,055	-		Psyr_1916	0.88	+0.4
2,191,168	+				-1.0
2,191,315	+		Psyr_1917	0.54	+0.0
2,191,315	+		Psyr_1917	0.54	+0.8
2,191,315	+		Psyr_1917	0.54	+0.4
2,191,315	+		Psyr_1917	0.54	+1.8
2,191,316	-		Psyr_1917	0.54	-0.7
2,191,316	-		Psyr_1917	0.54	+0.3
2,191,372	+		Psyr_1917	0.78	+0.0
2,191,372	+		Psyr_1917	0.78	+0.1
2,191,372	+		Psyr_1917	0.78	-0.9
2,191,372	+		Psyr_1917	0.78	-0.6
2,191,373	-		Psyr_1917	0.78	-0.6
2,191,373	-		Psyr_1917	0.78	-1.2
2,191,373	-		Psyr_1917	0.78	-0.2
2,191,373	-		Psyr_1917	0.78	+0.2
2,191,373	-		Psyr_1917	0.78	-1.1
2,191,373	-		Psyr_1917	0.78	+0.2
2,191,442	+				+0.1
2,191,443	-				-0.6
2,191,443	-				-0.3
2,191,443	-				+1.3
2,191,475	+				+1.8
2,191,475	+				-1.6
2,191,475	+				+1.9
2,191,475	+				+0.0
2,191,475	+				-0.2
2,191,475	+				-1.5
2,191,476	-				-1.5
2,191,476	-				-0.4
2,191,476	-				+1.0
2,191,476	-				+0.2
2,191,476	-				-1.0
2,191,476	-				-0.7
2,191,476	-				-0.5
2,191,500	+				-0.5
2,191,500	+				-1.5
2,191,515	-				-1.4
2,191,951	-		Psyr_1918	0.35	-0.1
2,191,972	+		Psyr_1918	0.37	+1.8
2,191,982	+		Psyr_1918	0.38	+1.0
2,191,982	+		Psyr_1918	0.38	+0.7
2,191,982	+		Psyr_1918	0.38	+0.6
2,191,983	-		Psyr_1918	0.38	+1.1
2,191,983	-		Psyr_1918	0.38	+2.1
2,191,983	-		Psyr_1918	0.38	+1.4
2,191,983	-		Psyr_1918	0.38	+0.5
2,191,985	-		Psyr_1918	0.38	+0.6
2,192,135	+		Psyr_1918	0.51	+0.3
2,192,135	+		Psyr_1918	0.51	+0.2
2,192,135	+		Psyr_1918	0.51	-1.3
2,192,136	-		Psyr_1918	0.51	+0.5
2,192,232	+		Psyr_1918	0.60	+1.3
2,192,232	+		Psyr_1918	0.60	+1.5
2,192,233	-		Psyr_1918	0.60	-1.6
2,192,233	-		Psyr_1918	0.60	+0.5
2,192,233	-		Psyr_1918	0.60	-0.8
2,192,233	-		Psyr_1918	0.60	+1.6
2,192,276	-		Psyr_1918	0.64	-0.6
2,192,383	+		Psyr_1918	0.73	+0.2
2,192,383	+		Psyr_1918	0.73	+1.0
2,192,384	-		Psyr_1918	0.73	-0.3
2,192,384	-		Psyr_1918	0.73	+0.7
2,192,385	+		Psyr_1918	0.73	+2.6
2,192,385	+		Psyr_1918	0.73	-1.8
2,192,385	+		Psyr_1918	0.73	+1.0
2,192,385	+		Psyr_1918	0.73	-1.0
2,192,386	-		Psyr_1918	0.73	+0.7
2,192,386	-		Psyr_1918	0.73	+0.0
2,192,386	-		Psyr_1918	0.73	+0.3
2,192,386	-		Psyr_1918	0.73	-0.4
2,192,399	-		Psyr_1918	0.75	+1.2
2,192,522	+		Psyr_1918	0.85	+1.0
2,192,556	-		Psyr_1918	0.88	-0.7
2,192,650	+				+0.1
2,192,650	+				+2.0
2,192,829	+		Psyr_1919	0.13	+1.3
2,192,829	+		Psyr_1919	0.13	-0.1
2,192,830	-		Psyr_1919	0.14	+0.3
2,192,830	-		Psyr_1919	0.14	-1.0
2,192,880	+		Psyr_1919	0.28	-0.2
2,192,880	+		Psyr_1919	0.28	+0.3
2,192,880	+		Psyr_1919	0.28	-0.4
2,192,880	+		Psyr_1919	0.28	+1.3
2,192,880	+		Psyr_1919	0.28	+2.0
2,192,881	-		Psyr_1919	0.28	+2.3
2,192,881	-		Psyr_1919	0.28	+1.9
2,192,881	-		Psyr_1919	0.28	+0.4
2,192,881	-		Psyr_1919	0.28	-0.8
2,192,881	-		Psyr_1919	0.28	+0.2
2,192,884	+		Psyr_1919	0.29	+2.3
2,192,884	+		Psyr_1919	0.29	-1.3
2,192,884	+		Psyr_1919	0.29	+2.0
2,192,884	+		Psyr_1919	0.29	+0.4
2,192,884	+		Psyr_1919	0.29	+1.3
2,192,885	-		Psyr_1919	0.29	-1.3
2,192,885	-		Psyr_1919	0.29	+1.5
2,192,885	-		Psyr_1919	0.29	+1.0
2,192,885	-		Psyr_1919	0.29	-1.6
2,192,885	-		Psyr_1919	0.29	+0.9
2,192,885	-		Psyr_1919	0.29	-1.7
2,192,976	-		Psyr_1919	0.54	+0.0
2,193,058	+		Psyr_1919	0.77	-1.3
2,193,125	+				-1.2
2,193,125	+				+1.0
2,193,125	+				-1.1
2,193,125	+				-0.6
2,193,125	+				-0.4
2,193,125	+				-1.2
2,193,125	+				+1.0
2,193,125	+				-0.9
2,193,125	+				+0.2
2,193,125	+				-0.0
2,193,125	+				-0.9
2,193,125	+				+0.6
2,193,125	+				-2.7
2,193,125	+				-0.5
2,193,125	+				-1.1
2,193,125	+				+0.7
2,193,125	+				-0.3
2,193,125	+				-1.0
2,193,125	+				-2.9
2,193,125	+				-1.0
2,193,125	+				+0.6
2,193,125	+				-0.1
2,193,125	+				+0.0
2,193,125	+				-1.4
2,193,125	+				+1.2
2,193,125	+				-1.8
2,193,125	+				-1.2
2,193,125	+				-0.2
2,193,126	-				-1.0
2,193,126	-				+0.0
2,193,126	-				-2.9
2,193,126	-				+1.7
2,193,126	-				+1.7
2,193,126	-				+0.4
2,193,126	-				+3.0
2,193,126	-				-0.0
2,193,126	-				-1.4
2,193,126	-				-1.8
2,193,126	-				+1.7
2,193,126	-				+4.5
2,193,126	-				-0.3
2,193,126	-				-0.2
2,193,126	-				-0.2
2,193,126	-				-0.7
2,193,126	-				-0.9
2,193,126	-				+0.2
2,193,126	-				-1.2
2,193,126	-				-0.6
2,193,126	-				+1.0
2,193,126	-				-2.0
2,193,126	-				+0.1
2,193,126	-				-2.1
2,193,126	-				-2.9
2,193,126	-				-3.1
2,193,234	+				+1.0
2,193,459	-		Psyr_1920	0.38	+0.0
2,193,499	+		Psyr_1920	0.42	-1.0
2,193,595	+		Psyr_1920	0.54	+1.2
2,193,596	-		Psyr_1920	0.54	-0.3
2,193,596	-		Psyr_1920	0.54	+0.0
2,193,619	+				-2.5
2,193,629	+		Psyr_1920	0.58	+0.6
2,193,630	-		Psyr_1920	0.58	-0.1
2,193,630	-		Psyr_1920	0.58	-2.5