Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1900

Experiment: KB with Ginkgolide A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Ginkgolide A 10 mM
2,174,444	-		Psyr_1899	0.69	-1.4
2,174,629	+		Psyr_1899	0.83	-1.4
2,174,629	+		Psyr_1899	0.83	-0.5
2,174,629	+		Psyr_1899	0.83	-0.4
2,174,629	+		Psyr_1899	0.83	-0.8
2,174,630	-		Psyr_1899	0.83	-0.6
2,174,630	-		Psyr_1899	0.83	+1.0
2,174,630	-		Psyr_1899	0.83	+1.0
2,174,630	-		Psyr_1899	0.83	-0.6
2,174,755	+				-0.4
2,174,755	+				+0.6
2,174,755	+				+1.2
2,174,756	-				-0.2
2,174,756	-				+1.4
2,174,756	-				-0.1
2,174,764	+				-2.0
2,174,828	+				+0.5
2,174,829	-				+0.0
2,174,829	-				+0.2
2,174,848	+				+0.3
2,174,848	+				-0.6
2,174,848	+				+0.2
2,174,848	+				+0.4
2,174,849	-				-1.3
2,174,852	+				+0.0
2,174,944	-				-0.2
2,174,956	-				+0.0
2,174,999	-				-1.2
2,175,089	+				+0.2
2,175,111	-				+0.8
2,175,111	-				-1.8
2,175,111	-				-1.3
2,175,111	-				-1.6
2,175,128	-				-0.4
2,175,217	-				-0.1
2,175,217	-				+0.8
2,175,218	+				+0.1
2,175,240	+				+1.8
2,175,241	-				-3.6
2,175,344	-				+1.3
2,175,355	+				-1.4
2,175,417	-		Psyr_1900	0.15	-1.8
2,175,492	+		Psyr_1900	0.23	-1.6
2,175,493	-		Psyr_1900	0.23	+1.7
2,175,621	+		Psyr_1900	0.36	-1.5
2,175,621	+		Psyr_1900	0.36	-1.0
2,175,621	+		Psyr_1900	0.36	-0.5
2,175,622	-		Psyr_1900	0.36	-1.2
2,175,622	-		Psyr_1900	0.36	-1.9
2,175,954	+		Psyr_1900	0.70	-0.3
2,175,954	+		Psyr_1900	0.70	-1.8
2,175,955	-		Psyr_1900	0.70	+0.0
2,175,976	+		Psyr_1900	0.72	-1.8
2,176,142	-		Psyr_1900	0.89	-1.0
2,176,142	-		Psyr_1900	0.89	-0.3
2,176,155	+				+0.3
2,176,155	+				+1.4
2,176,155	+				+0.0
2,176,155	+				+2.2
2,176,156	-				+2.2
2,176,197	+				-1.4
2,176,324	+				+0.3
2,176,350	+				-0.3
2,176,426	+				+0.7
2,176,433	-				-1.2
2,176,440	-				-1.9
2,176,723	+		Psyr_1901	0.24	+0.4
2,177,086	+		Psyr_1901	0.49	-1.8