Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1875

Experiment: KB with Ginkgolide A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Ginkgolide A 10 mM
2,149,399	+		Psyr_1874	0.13	-1.0
2,149,399	+		Psyr_1874	0.13	-0.9
2,149,400	-		Psyr_1874	0.13	+2.6
2,149,400	-		Psyr_1874	0.13	-0.7
2,149,660	+		Psyr_1874	0.40	+0.8
2,149,674	+		Psyr_1874	0.41	-0.7
2,149,792	+		Psyr_1874	0.53	+0.8
2,149,792	+		Psyr_1874	0.53	+1.1
2,149,792	+		Psyr_1874	0.53	-1.7
2,149,793	-		Psyr_1874	0.53	-1.2
2,149,822	+		Psyr_1874	0.56	-1.5
2,149,852	-		Psyr_1874	0.59	-0.5
2,149,892	-		Psyr_1874	0.63	+0.3
2,149,925	+		Psyr_1874	0.67	-1.1
2,149,925	+		Psyr_1874	0.67	-1.3
2,149,925	+		Psyr_1874	0.67	+0.8
2,149,925	+		Psyr_1874	0.67	-0.4
2,149,926	-		Psyr_1874	0.67	-1.2
2,149,927	+		Psyr_1874	0.67	-3.1
2,149,928	-		Psyr_1874	0.67	+0.0
2,149,928	-		Psyr_1874	0.67	-2.0
2,149,928	-		Psyr_1874	0.67	-0.5
2,149,946	+		Psyr_1874	0.69	-0.3
2,149,993	+		Psyr_1874	0.74	+1.9
2,149,993	+		Psyr_1874	0.74	+0.5
2,149,993	+		Psyr_1874	0.74	-0.1
2,150,136	+		Psyr_1874	0.89	+0.1
2,150,137	-		Psyr_1874	0.89	+0.2
2,150,192	+				+0.5
2,150,193	-				+0.3
2,150,218	+				-0.7
2,150,218	+				+0.6
2,150,219	-				+1.3
2,150,219	-				+1.1
2,150,320	-				-1.1
2,150,465	+		Psyr_1875	0.14	-0.6
2,150,465	+		Psyr_1875	0.14	-1.0
2,150,465	+		Psyr_1875	0.14	+1.0
2,150,466	-		Psyr_1875	0.14	+1.1
2,151,040	+				-0.4
2,151,074	-				-0.3
2,151,113	+				+0.1
2,151,113	+				+1.6
2,151,213	+				-0.2
2,151,213	+				-1.4
2,151,214	-				-0.3
2,151,214	-				-1.3
2,151,214	-				-0.8
2,151,438	+		Psyr_1876	0.86	+1.0
2,151,438	+		Psyr_1876	0.86	-1.3
2,151,472	+				-0.3
2,151,472	+				+2.2
2,151,524	+				+1.6
2,151,524	+				+0.2
2,151,525	-				+0.7
2,151,525	-				-0.1
2,151,652	+				+2.8
2,151,653	-				-0.8
2,151,653	-				-1.3
2,151,658	+				-2.4
2,151,658	+				-1.8
2,151,659	-				-1.4
2,151,659	-				-0.6
2,151,688	+		Psyr_1877	0.17	-1.7
2,151,692	-		Psyr_1877	0.18	+0.2
2,151,699	+		Psyr_1877	0.21	+0.2
2,151,737	-		Psyr_1877	0.32	-0.4
2,151,767	+		Psyr_1877	0.41	-1.0
2,151,768	-		Psyr_1877	0.42	+2.6
2,151,768	-		Psyr_1877	0.42	+0.9
2,151,799	+		Psyr_1877	0.51	+0.9
2,151,799	+		Psyr_1877	0.51	-1.2
2,151,799	+		Psyr_1877	0.51	-0.2
2,151,799	+		Psyr_1877	0.51	-3.4
2,151,799	+		Psyr_1877	0.51	-0.6
2,151,799	+		Psyr_1877	0.51	+0.3
2,151,799	+		Psyr_1877	0.51	-2.4
2,151,799	+		Psyr_1877	0.51	-0.0
2,151,799	+		Psyr_1877	0.51	+0.3
2,151,799	+		Psyr_1877	0.51	+0.3
2,151,799	+		Psyr_1877	0.51	-2.6
2,151,800	-		Psyr_1877	0.51	-0.1
2,151,800	-		Psyr_1877	0.51	-1.6
2,151,800	-		Psyr_1877	0.51	-0.9
2,151,800	-		Psyr_1877	0.51	+1.1
2,151,800	-		Psyr_1877	0.51	-0.4
2,151,800	-		Psyr_1877	0.51	+0.2
2,151,800	-		Psyr_1877	0.51	-1.0
2,151,800	-		Psyr_1877	0.51	-0.8
2,151,800	-		Psyr_1877	0.51	-0.2
2,151,801	+		Psyr_1877	0.52	+2.0
2,151,801	+		Psyr_1877	0.52	-0.5
2,151,801	+		Psyr_1877	0.52	+0.3
2,151,802	-		Psyr_1877	0.52	-0.6
2,151,802	-		Psyr_1877	0.52	+2.0
2,151,802	-		Psyr_1877	0.52	-0.6
2,151,803	+		Psyr_1877	0.52	+0.6
2,151,803	+		Psyr_1877	0.52	+0.5
2,151,803	+		Psyr_1877	0.52	+0.1
2,151,803	+		Psyr_1877	0.52	-0.2
2,151,803	+		Psyr_1877	0.52	+0.0
2,151,804	-		Psyr_1877	0.52	+0.0
2,151,804	-		Psyr_1877	0.52	-0.5
2,151,804	-		Psyr_1877	0.52	-1.1
2,151,804	-		Psyr_1877	0.52	-3.2
2,151,804	-		Psyr_1877	0.52	+0.4
2,151,820	+		Psyr_1877	0.57	-0.7
2,151,821	-		Psyr_1877	0.58	+0.0
2,151,821	-		Psyr_1877	0.58	-1.3
2,151,821	-		Psyr_1877	0.58	+0.4
2,151,895	+		Psyr_1877	0.80	-1.1
2,151,896	-		Psyr_1877	0.80	+2.5
2,151,896	-		Psyr_1877	0.80	-0.9
2,151,896	-		Psyr_1877	0.80	+0.6
2,151,896	-		Psyr_1877	0.80	-0.2
2,151,896	-		Psyr_1877	0.80	+0.5
2,151,958	+				+0.6
2,151,958	+				-1.4
2,151,958	+				+2.1
2,151,958	+				+0.3
2,151,958	+				+1.1
2,151,958	+				-3.3
2,151,959	-				+0.1
2,151,959	-				-0.2
2,151,959	-				-1.8
2,151,959	-				+0.1