Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1872

Experiment: KB with Ginkgolide A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Ginkgolide A 10 mM
2,146,503	+		Psyr_1870	0.88	+0.2
2,146,504	-		Psyr_1870	0.88	-0.6
2,146,603	-				-0.4
2,146,646	+				+0.1
2,146,646	+				-0.4
2,146,647	-				-0.3
2,146,647	-				+1.0
2,146,652	+				-1.5
2,146,653	-				+3.0
2,146,653	-				+0.9
2,146,675	+				-0.1
2,146,683	-				+0.9
2,146,783	+		Psyr_1871	0.20	-2.3
2,146,783	+		Psyr_1871	0.20	+1.8
2,147,030	+		Psyr_1871	0.50	-2.0
2,147,030	+		Psyr_1871	0.50	-0.6
2,147,156	+		Psyr_1871	0.65	-0.3
2,147,157	-		Psyr_1871	0.65	-0.5
2,147,157	-		Psyr_1871	0.65	+0.6
2,147,226	+		Psyr_1871	0.73	-0.4
2,147,226	+		Psyr_1871	0.73	-0.1
2,147,309	+		Psyr_1871	0.83	-0.3
2,147,310	-		Psyr_1871	0.84	+0.5
2,147,444	+				-2.6
2,147,444	+				+0.5
2,147,444	+				+0.1
2,147,531	-				+3.3
2,147,554	+		Psyr_1872	0.14	+4.2
2,147,554	+		Psyr_1872	0.14	+1.4
2,147,555	-		Psyr_1872	0.14	+0.7
2,147,555	-		Psyr_1872	0.14	+1.0
2,147,555	-		Psyr_1872	0.14	+0.1
2,147,740	+		Psyr_1872	0.64	+0.5
2,147,754	-		Psyr_1872	0.68	+0.4
2,147,873	+				+0.2
2,147,873	+				+0.9
2,147,873	+				+0.3
2,147,873	+				-0.5
2,147,873	+				+0.8
2,147,874	-				-0.3
2,147,874	-				-0.4
2,147,874	-				-0.8
2,147,977	+				+0.2
2,147,988	+				-0.4
2,148,016	+				-1.0
2,148,016	+				+0.3
2,148,016	+				+0.3
2,148,017	-				+0.2
2,148,203	+				+1.8
2,148,203	+				-1.5
2,148,203	+				-2.5
2,148,203	+				-1.8
2,148,203	+				+0.7
2,148,204	-				-0.3
2,148,204	-				-0.5
2,148,204	-				+0.8
2,148,205	+				+0.0
2,148,206	-				-0.4
2,148,206	-				+1.3
2,148,211	+				-1.0
2,148,211	+				+0.5
2,148,211	+				-0.8
2,148,212	-				+1.0
2,148,212	-				-0.2
2,148,228	-				-1.3
2,148,228	-				+0.5
2,148,315	+				+1.0
2,148,373	-				-3.4
2,148,382	-				+0.5
2,148,482	+				-0.6
2,148,482	+				-0.3
2,148,482	+				+1.7
2,148,482	+				-0.8
2,148,482	+				+0.7
2,148,482	+				-0.1
2,148,482	+				-2.8
2,148,482	+				+0.0
2,148,482	+				-1.0
2,148,482	+				+0.0
2,148,482	+				+0.0
2,148,483	-				+1.0
2,148,483	-				-0.3
2,148,483	-				-0.3
2,148,483	-				+2.3
2,148,483	-				-0.6
2,148,483	-				+0.1
2,148,490	+				+3.0
2,148,500	+				-0.6
2,148,552	+				+0.1
2,148,572	-		Psyr_1873	0.12	+1.3
2,148,572	-		Psyr_1873	0.12	-0.6
2,148,612	+		Psyr_1873	0.18	-0.8
2,148,613	-		Psyr_1873	0.18	-4.0
2,148,663	+		Psyr_1873	0.25	+0.2
2,148,664	-		Psyr_1873	0.25	-1.0
2,148,729	+		Psyr_1873	0.34	-3.3
2,148,729	+		Psyr_1873	0.34	-1.4
2,148,730	-		Psyr_1873	0.34	-0.4
2,148,730	-		Psyr_1873	0.34	-0.8