Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1755

Experiment: KB with Ginkgolide A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1754 and Psyr_1755 are separated by 18 nucleotidesPsyr_1755 and Psyr_1756 are separated by 1 nucleotides Psyr_1754: Psyr_1754 - Enoyl-[acyl-carrier-protein] reductase [NADH], at 1,992,982 to 1,993,776 _1754 Psyr_1755: Psyr_1755 - ABC transporter, at 1,993,795 to 1,995,405 _1755 Psyr_1756: Psyr_1756 - Binding-protein-dependent transport systems inner membrane component, at 1,995,407 to 1,996,426 _1756 Position (kb) 1993 1994 1995 1996Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1992.830 kb on + strandat 1993.846 kb on - strandat 1993.846 kb on - strandat 1993.848 kb on - strandat 1993.873 kb on - strandat 1993.974 kb on - strand, within Psyr_1755at 1993.974 kb on - strand, within Psyr_1755at 1993.986 kb on - strand, within Psyr_1755at 1994.380 kb on + strand, within Psyr_1755at 1994.492 kb on - strand, within Psyr_1755at 1994.492 kb on - strand, within Psyr_1755at 1994.722 kb on + strand, within Psyr_1755at 1994.722 kb on + strand, within Psyr_1755at 1994.722 kb on + strand, within Psyr_1755at 1994.723 kb on - strand, within Psyr_1755at 1994.723 kb on - strand, within Psyr_1755at 1994.723 kb on - strand, within Psyr_1755at 1994.723 kb on - strand, within Psyr_1755at 1994.723 kb on - strand, within Psyr_1755at 1994.734 kb on + strand, within Psyr_1755at 1994.735 kb on - strand, within Psyr_1755at 1994.744 kb on - strand, within Psyr_1755at 1995.408 kb on + strandat 1995.408 kb on + strandat 1995.409 kb on - strandat 1995.722 kb on + strand, within Psyr_1756at 1995.722 kb on + strand, within Psyr_1756at 1995.723 kb on - strand, within Psyr_1756at 1995.726 kb on + strand, within Psyr_1756at 1995.830 kb on + strand, within Psyr_1756at 1995.830 kb on + strand, within Psyr_1756at 1995.831 kb on - strand, within Psyr_1756at 1995.831 kb on - strand, within Psyr_1756at 1995.858 kb on + strand, within Psyr_1756at 1995.858 kb on + strand, within Psyr_1756at 1995.858 kb on + strand, within Psyr_1756at 1995.858 kb on + strand, within Psyr_1756at 1995.858 kb on + strand, within Psyr_1756at 1995.858 kb on + strand, within Psyr_1756at 1995.858 kb on + strand, within Psyr_1756at 1995.858 kb on + strand, within Psyr_1756at 1995.858 kb on + strand, within Psyr_1756at 1995.859 kb on - strand, within Psyr_1756at 1995.925 kb on - strand, within Psyr_1756at 1995.925 kb on - strand, within Psyr_1756at 1995.925 kb on - strand, within Psyr_1756at 1996.014 kb on + strand, within Psyr_1756at 1996.014 kb on + strand, within Psyr_1756at 1996.015 kb on - strand, within Psyr_1756at 1996.015 kb on - strand, within Psyr_1756at 1996.107 kb on + strand, within Psyr_1756at 1996.107 kb on + strand, within Psyr_1756at 1996.108 kb on - strand, within Psyr_1756at 1996.108 kb on - strand, within Psyr_1756at 1996.122 kb on + strand, within Psyr_1756at 1996.186 kb on - strand, within Psyr_1756at 1996.186 kb on - strand, within Psyr_1756at 1996.197 kb on + strand, within Psyr_1756at 1996.197 kb on + strand, within Psyr_1756at 1996.197 kb on + strand, within Psyr_1756at 1996.198 kb on - strand, within Psyr_1756at 1996.198 kb on - strand, within Psyr_1756at 1996.198 kb on - strand, within Psyr_1756at 1996.198 kb on - strand, within Psyr_1756at 1996.198 kb on - strand, within Psyr_1756

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM
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1,992,830 + -2.3
1,993,846 - -2.1
1,993,846 - +0.2
1,993,848 - -0.1
1,993,873 - -0.4
1,993,974 - Psyr_1755 0.11 -0.5
1,993,974 - Psyr_1755 0.11 +0.5
1,993,986 - Psyr_1755 0.12 -0.6
1,994,380 + Psyr_1755 0.36 -0.1
1,994,492 - Psyr_1755 0.43 +0.1
1,994,492 - Psyr_1755 0.43 -1.7
1,994,722 + Psyr_1755 0.58 +0.2
1,994,722 + Psyr_1755 0.58 +1.1
1,994,722 + Psyr_1755 0.58 -0.6
1,994,723 - Psyr_1755 0.58 -0.5
1,994,723 - Psyr_1755 0.58 -0.7
1,994,723 - Psyr_1755 0.58 -0.4
1,994,723 - Psyr_1755 0.58 -1.4
1,994,723 - Psyr_1755 0.58 -0.5
1,994,734 + Psyr_1755 0.58 +0.8
1,994,735 - Psyr_1755 0.58 -2.0
1,994,744 - Psyr_1755 0.59 -1.2
1,995,408 + +1.4
1,995,408 + +0.1
1,995,409 - -1.8
1,995,722 + Psyr_1756 0.31 +1.6
1,995,722 + Psyr_1756 0.31 -0.8
1,995,723 - Psyr_1756 0.31 +1.9
1,995,726 + Psyr_1756 0.31 -0.3
1,995,830 + Psyr_1756 0.41 -0.7
1,995,830 + Psyr_1756 0.41 -0.8
1,995,831 - Psyr_1756 0.42 +1.8
1,995,831 - Psyr_1756 0.42 -0.2
1,995,858 + Psyr_1756 0.44 +0.4
1,995,858 + Psyr_1756 0.44 -0.1
1,995,858 + Psyr_1756 0.44 +0.2
1,995,858 + Psyr_1756 0.44 -0.8
1,995,858 + Psyr_1756 0.44 -2.1
1,995,858 + Psyr_1756 0.44 -0.9
1,995,858 + Psyr_1756 0.44 -1.5
1,995,858 + Psyr_1756 0.44 -2.6
1,995,858 + Psyr_1756 0.44 +0.1
1,995,859 - Psyr_1756 0.44 +0.2
1,995,925 - Psyr_1756 0.51 +0.5
1,995,925 - Psyr_1756 0.51 +1.1
1,995,925 - Psyr_1756 0.51 -1.3
1,996,014 + Psyr_1756 0.60 -0.1
1,996,014 + Psyr_1756 0.60 -3.0
1,996,015 - Psyr_1756 0.60 +0.1
1,996,015 - Psyr_1756 0.60 -1.0
1,996,107 + Psyr_1756 0.69 -0.8
1,996,107 + Psyr_1756 0.69 -1.0
1,996,108 - Psyr_1756 0.69 +0.6
1,996,108 - Psyr_1756 0.69 -1.2
1,996,122 + Psyr_1756 0.70 -1.8
1,996,186 - Psyr_1756 0.76 +1.4
1,996,186 - Psyr_1756 0.76 -0.4
1,996,197 + Psyr_1756 0.77 -1.5
1,996,197 + Psyr_1756 0.77 +2.1
1,996,197 + Psyr_1756 0.77 -0.2
1,996,198 - Psyr_1756 0.78 -0.9
1,996,198 - Psyr_1756 0.78 -0.4
1,996,198 - Psyr_1756 0.78 +0.2
1,996,198 - Psyr_1756 0.78 +0.9
1,996,198 - Psyr_1756 0.78 -0.3

Or see this region's nucleotide sequence