Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1738

Experiment: KB with Ginkgolide A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1737 and Psyr_1738 overlap by 1 nucleotidesPsyr_1738 and Psyr_1739 overlap by 8 nucleotidesPsyr_1739 and Psyr_1740 are separated by 10 nucleotides Psyr_1737: Psyr_1737 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 1,974,124 to 1,975,218 _1737 Psyr_1738: Psyr_1738 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 1,975,218 to 1,976,333 _1738 Psyr_1739: Psyr_1739 - carbohydrate ABC transporter membrane protein 1, CUT1 family, at 1,976,326 to 1,977,192 _1739 Psyr_1740: Psyr_1740 - carbohydrate ABC transporter membrane protein 2, CUT1 family, at 1,977,203 to 1,978,003 _1740 Position (kb) 1975 1976 1977Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1974.617 kb on - strand, within Psyr_1737at 1974.673 kb on - strand, within Psyr_1737at 1974.682 kb on - strand, within Psyr_1737at 1974.682 kb on - strand, within Psyr_1737at 1974.682 kb on - strand, within Psyr_1737at 1974.685 kb on + strand, within Psyr_1737at 1974.686 kb on - strand, within Psyr_1737at 1974.784 kb on + strand, within Psyr_1737at 1974.857 kb on + strand, within Psyr_1737at 1974.857 kb on + strand, within Psyr_1737at 1974.857 kb on + strand, within Psyr_1737at 1974.857 kb on + strand, within Psyr_1737at 1974.858 kb on - strand, within Psyr_1737at 1974.858 kb on - strand, within Psyr_1737at 1974.858 kb on - strand, within Psyr_1737at 1974.858 kb on - strand, within Psyr_1737at 1974.858 kb on - strand, within Psyr_1737at 1974.937 kb on + strand, within Psyr_1737at 1974.938 kb on - strand, within Psyr_1737at 1975.105 kb on + strand, within Psyr_1737at 1975.105 kb on + strand, within Psyr_1737at 1975.105 kb on + strand, within Psyr_1737at 1975.106 kb on - strand, within Psyr_1737at 1975.106 kb on - strand, within Psyr_1737at 1975.106 kb on - strand, within Psyr_1737at 1975.132 kb on + strandat 1975.133 kb on - strandat 1975.133 kb on - strandat 1975.133 kb on - strandat 1975.157 kb on + strandat 1975.201 kb on - strandat 1975.254 kb on + strandat 1975.254 kb on + strandat 1975.254 kb on + strandat 1975.255 kb on - strandat 1975.255 kb on - strandat 1975.259 kb on + strandat 1975.282 kb on - strandat 1975.282 kb on - strandat 1975.282 kb on - strandat 1975.326 kb on + strandat 1975.327 kb on - strandat 1975.327 kb on - strandat 1975.491 kb on + strand, within Psyr_1738at 1975.491 kb on + strand, within Psyr_1738at 1975.492 kb on - strand, within Psyr_1738at 1975.492 kb on - strand, within Psyr_1738at 1975.492 kb on - strand, within Psyr_1738at 1975.800 kb on + strand, within Psyr_1738at 1975.800 kb on + strand, within Psyr_1738at 1975.857 kb on + strand, within Psyr_1738at 1975.857 kb on + strand, within Psyr_1738at 1975.858 kb on - strandat 1975.858 kb on - strand, within Psyr_1738at 1975.858 kb on - strand, within Psyr_1738at 1975.858 kb on - strand, within Psyr_1738at 1976.045 kb on + strand, within Psyr_1738at 1976.045 kb on + strand, within Psyr_1738at 1976.109 kb on + strand, within Psyr_1738at 1976.139 kb on + strand, within Psyr_1738at 1976.139 kb on + strand, within Psyr_1738at 1976.139 kb on + strand, within Psyr_1738at 1976.139 kb on + strand, within Psyr_1738at 1976.139 kb on + strand, within Psyr_1738at 1976.139 kb on + strand, within Psyr_1738at 1976.140 kb on - strand, within Psyr_1738at 1976.140 kb on - strand, within Psyr_1738at 1976.140 kb on - strand, within Psyr_1738at 1976.140 kb on - strand, within Psyr_1738at 1976.140 kb on - strand, within Psyr_1738at 1976.140 kb on - strand, within Psyr_1738at 1976.140 kb on - strand, within Psyr_1738at 1976.140 kb on - strand, within Psyr_1738at 1976.161 kb on - strand, within Psyr_1738at 1976.161 kb on - strand, within Psyr_1738at 1976.161 kb on - strand, within Psyr_1738at 1976.161 kb on - strand, within Psyr_1738at 1976.161 kb on - strand, within Psyr_1738at 1976.277 kb on + strandat 1976.277 kb on + strandat 1976.277 kb on + strandat 1976.277 kb on + strandat 1976.278 kb on - strandat 1976.278 kb on - strandat 1976.289 kb on + strandat 1976.289 kb on + strandat 1976.290 kb on - strandat 1976.426 kb on - strand, within Psyr_1739at 1976.539 kb on + strand, within Psyr_1739at 1976.540 kb on - strand, within Psyr_1739at 1976.552 kb on + strand, within Psyr_1739at 1976.752 kb on + strand, within Psyr_1739at 1976.752 kb on + strand, within Psyr_1739at 1976.752 kb on + strand, within Psyr_1739at 1976.752 kb on + strand, within Psyr_1739at 1976.753 kb on - strand, within Psyr_1739at 1976.753 kb on - strand, within Psyr_1739at 1976.753 kb on - strand, within Psyr_1739at 1976.753 kb on - strand, within Psyr_1739at 1976.759 kb on - strand, within Psyr_1739at 1976.759 kb on - strand, within Psyr_1739at 1976.872 kb on + strand, within Psyr_1739at 1976.872 kb on + strand, within Psyr_1739at 1976.872 kb on + strand, within Psyr_1739at 1976.872 kb on + strand, within Psyr_1739at 1976.872 kb on + strand, within Psyr_1739at 1976.872 kb on + strand, within Psyr_1739at 1976.873 kb on - strand, within Psyr_1739at 1976.873 kb on - strand, within Psyr_1739at 1976.873 kb on - strand, within Psyr_1739at 1976.875 kb on + strand, within Psyr_1739at 1976.876 kb on - strand, within Psyr_1739at 1976.925 kb on + strand, within Psyr_1739at 1976.926 kb on - strand, within Psyr_1739at 1976.926 kb on - strand, within Psyr_1739at 1976.926 kb on - strand, within Psyr_1739at 1976.998 kb on + strand, within Psyr_1739at 1976.998 kb on + strand, within Psyr_1739at 1976.999 kb on - strand, within Psyr_1739at 1976.999 kb on - strand, within Psyr_1739at 1977.014 kb on + strand, within Psyr_1739at 1977.124 kb on + strandat 1977.124 kb on + strandat 1977.124 kb on + strandat 1977.160 kb on + strandat 1977.160 kb on + strandat 1977.236 kb on + strandat 1977.236 kb on + strandat 1977.237 kb on - strandat 1977.263 kb on + strandat 1977.264 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM
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1,974,617 - Psyr_1737 0.45 -1.4
1,974,673 - Psyr_1737 0.50 +1.1
1,974,682 - Psyr_1737 0.51 -1.9
1,974,682 - Psyr_1737 0.51 +0.7
1,974,682 - Psyr_1737 0.51 -1.6
1,974,685 + Psyr_1737 0.51 +0.5
1,974,686 - Psyr_1737 0.51 +0.5
1,974,784 + Psyr_1737 0.60 -0.1
1,974,857 + Psyr_1737 0.67 -0.7
1,974,857 + Psyr_1737 0.67 +0.1
1,974,857 + Psyr_1737 0.67 +0.7
1,974,857 + Psyr_1737 0.67 -0.3
1,974,858 - Psyr_1737 0.67 -0.3
1,974,858 - Psyr_1737 0.67 +0.1
1,974,858 - Psyr_1737 0.67 +1.9
1,974,858 - Psyr_1737 0.67 -0.8
1,974,858 - Psyr_1737 0.67 -0.7
1,974,937 + Psyr_1737 0.74 +1.5
1,974,938 - Psyr_1737 0.74 +0.2
1,975,105 + Psyr_1737 0.90 +0.1
1,975,105 + Psyr_1737 0.90 -1.2
1,975,105 + Psyr_1737 0.90 -0.3
1,975,106 - Psyr_1737 0.90 +0.3
1,975,106 - Psyr_1737 0.90 +0.1
1,975,106 - Psyr_1737 0.90 +0.6
1,975,132 + -0.2
1,975,133 - +0.6
1,975,133 - -0.2
1,975,133 - -2.3
1,975,157 + -0.2
1,975,201 - -1.1
1,975,254 + -0.8
1,975,254 + +2.1
1,975,254 + -0.5
1,975,255 - +0.5
1,975,255 - +1.1
1,975,259 + +1.3
1,975,282 - +0.5
1,975,282 - +0.0
1,975,282 - -0.5
1,975,326 + +0.4
1,975,327 - +0.7
1,975,327 - +2.2
1,975,491 + Psyr_1738 0.24 -0.8
1,975,491 + Psyr_1738 0.24 -1.3
1,975,492 - Psyr_1738 0.25 -1.5
1,975,492 - Psyr_1738 0.25 +0.4
1,975,492 - Psyr_1738 0.25 +0.7
1,975,800 + Psyr_1738 0.52 -0.9
1,975,800 + Psyr_1738 0.52 -0.9
1,975,857 + Psyr_1738 0.57 -0.0
1,975,857 + Psyr_1738 0.57 -0.3
1,975,858 - +1.5
1,975,858 - Psyr_1738 0.57 -1.5
1,975,858 - Psyr_1738 0.57 -1.6
1,975,858 - Psyr_1738 0.57 -0.7
1,976,045 + Psyr_1738 0.74 +0.3
1,976,045 + Psyr_1738 0.74 -0.9
1,976,109 + Psyr_1738 0.80 +0.7
1,976,139 + Psyr_1738 0.83 -0.8
1,976,139 + Psyr_1738 0.83 +0.6
1,976,139 + Psyr_1738 0.83 +0.9
1,976,139 + Psyr_1738 0.83 -0.7
1,976,139 + Psyr_1738 0.83 -0.5
1,976,139 + Psyr_1738 0.83 -0.6
1,976,140 - Psyr_1738 0.83 -1.2
1,976,140 - Psyr_1738 0.83 +1.5
1,976,140 - Psyr_1738 0.83 -1.3
1,976,140 - Psyr_1738 0.83 +2.2
1,976,140 - Psyr_1738 0.83 +1.6
1,976,140 - Psyr_1738 0.83 -2.4
1,976,140 - Psyr_1738 0.83 +1.7
1,976,140 - Psyr_1738 0.83 +0.3
1,976,161 - Psyr_1738 0.84 -2.1
1,976,161 - Psyr_1738 0.84 -1.7
1,976,161 - Psyr_1738 0.84 -0.9
1,976,161 - Psyr_1738 0.84 -1.4
1,976,161 - Psyr_1738 0.84 +0.1
1,976,277 + -0.9
1,976,277 + +0.1
1,976,277 + -2.4
1,976,277 + +2.4
1,976,278 - -1.1
1,976,278 - -0.3
1,976,289 + -0.3
1,976,289 + +1.3
1,976,290 - +0.2
1,976,426 - Psyr_1739 0.12 +1.3
1,976,539 + Psyr_1739 0.25 +1.4
1,976,540 - Psyr_1739 0.25 +0.6
1,976,552 + Psyr_1739 0.26 -2.5
1,976,752 + Psyr_1739 0.49 -1.4
1,976,752 + Psyr_1739 0.49 +0.5
1,976,752 + Psyr_1739 0.49 +1.7
1,976,752 + Psyr_1739 0.49 -0.2
1,976,753 - Psyr_1739 0.49 +0.3
1,976,753 - Psyr_1739 0.49 +1.2
1,976,753 - Psyr_1739 0.49 -1.5
1,976,753 - Psyr_1739 0.49 -1.8
1,976,759 - Psyr_1739 0.50 -2.0
1,976,759 - Psyr_1739 0.50 +0.2
1,976,872 + Psyr_1739 0.63 +0.2
1,976,872 + Psyr_1739 0.63 -0.9
1,976,872 + Psyr_1739 0.63 +0.9
1,976,872 + Psyr_1739 0.63 -2.4
1,976,872 + Psyr_1739 0.63 +0.5
1,976,872 + Psyr_1739 0.63 -0.7
1,976,873 - Psyr_1739 0.63 +0.5
1,976,873 - Psyr_1739 0.63 -1.6
1,976,873 - Psyr_1739 0.63 -1.3
1,976,875 + Psyr_1739 0.63 -0.4
1,976,876 - Psyr_1739 0.63 +0.1
1,976,925 + Psyr_1739 0.69 +1.6
1,976,926 - Psyr_1739 0.69 -3.1
1,976,926 - Psyr_1739 0.69 -0.4
1,976,926 - Psyr_1739 0.69 -1.1
1,976,998 + Psyr_1739 0.78 -0.6
1,976,998 + Psyr_1739 0.78 +1.1
1,976,999 - Psyr_1739 0.78 +1.9
1,976,999 - Psyr_1739 0.78 +0.3
1,977,014 + Psyr_1739 0.79 +1.1
1,977,124 + -1.8
1,977,124 + +2.1
1,977,124 + +0.7
1,977,160 + +0.3
1,977,160 + -0.2
1,977,236 + +1.3
1,977,236 + +0.2
1,977,237 - +0.7
1,977,263 + -2.0
1,977,264 - +2.0

Or see this region's nucleotide sequence