Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1718

Experiment: KB with Ginkgolide A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1717 and Psyr_1718 overlap by 4 nucleotidesPsyr_1718 and Psyr_1719 overlap by 8 nucleotidesPsyr_1719 and Psyr_1720 overlap by 4 nucleotides Psyr_1717: Psyr_1717 - TPR repeat:von Willebrand factor, type A, at 1,946,230 to 1,947,948 _1717 Psyr_1718: Psyr_1718 - von Willebrand factor, type A, at 1,947,945 to 1,949,003 _1718 Psyr_1719: Psyr_1719 - conserved hypothetical protein, at 1,948,996 to 1,949,490 _1719 Psyr_1720: Psyr_1720 - Protein of unknown function DUF58, at 1,949,487 to 1,950,431 _1720 Position (kb) 1947 1948 1949 1950Strain fitness (log2 ratio) -2 -1 0 1 2at 1947.134 kb on + strand, within Psyr_1717at 1948.093 kb on + strand, within Psyr_1718at 1948.201 kb on + strand, within Psyr_1718at 1948.202 kb on - strand, within Psyr_1718at 1948.439 kb on + strand, within Psyr_1718at 1948.547 kb on - strand, within Psyr_1718at 1948.547 kb on - strand, within Psyr_1718at 1949.078 kb on + strand, within Psyr_1719at 1949.155 kb on - strand, within Psyr_1719at 1949.170 kb on - strand, within Psyr_1719at 1949.262 kb on - strand, within Psyr_1719at 1949.521 kb on + strandat 1949.996 kb on - strand, within Psyr_1720at 1949.996 kb on - strand, within Psyr_1720

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM
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1,947,134 + Psyr_1717 0.53 -1.7
1,948,093 + Psyr_1718 0.14 +0.1
1,948,201 + Psyr_1718 0.24 +1.1
1,948,202 - Psyr_1718 0.24 -0.5
1,948,439 + Psyr_1718 0.47 +0.7
1,948,547 - Psyr_1718 0.57 -1.0
1,948,547 - Psyr_1718 0.57 -2.4
1,949,078 + Psyr_1719 0.17 +2.4
1,949,155 - Psyr_1719 0.32 +1.9
1,949,170 - Psyr_1719 0.35 -0.2
1,949,262 - Psyr_1719 0.54 +0.6
1,949,521 + +0.4
1,949,996 - Psyr_1720 0.54 -0.5
1,949,996 - Psyr_1720 0.54 +0.1

Or see this region's nucleotide sequence