Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1708

Experiment: KB with Ginkgolide A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1706 and Psyr_1707 are separated by 19 nucleotidesPsyr_1707 and Psyr_1708 are separated by 95 nucleotidesPsyr_1708 and Psyr_1709 are separated by 214 nucleotides Psyr_1706: Psyr_1706 - General substrate transporter:Major facilitator superfamily, at 1,930,813 to 1,932,048 _1706 Psyr_1707: Psyr_1707 - transcriptional regulator, GntR family, at 1,932,068 to 1,932,781 _1707 Psyr_1708: Psyr_1708 - L-arabinonate dehydratase, at 1,932,877 to 1,934,619 _1708 Psyr_1709: Psyr_1709 - Major facilitator superfamily, at 1,934,834 to 1,936,147 _1709 Position (kb) 1932 1933 1934 1935Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1931.915 kb on + strand, within Psyr_1706at 1931.915 kb on + strand, within Psyr_1706at 1931.989 kb on + strandat 1931.989 kb on + strandat 1931.989 kb on + strandat 1931.989 kb on + strandat 1931.989 kb on + strandat 1931.990 kb on - strandat 1931.990 kb on - strandat 1932.040 kb on - strandat 1932.229 kb on - strand, within Psyr_1707at 1932.375 kb on + strand, within Psyr_1707at 1932.459 kb on - strand, within Psyr_1707at 1932.518 kb on + strand, within Psyr_1707at 1932.518 kb on + strand, within Psyr_1707at 1932.519 kb on - strand, within Psyr_1707at 1932.649 kb on - strand, within Psyr_1707at 1932.649 kb on - strand, within Psyr_1707at 1932.649 kb on - strand, within Psyr_1707at 1932.649 kb on - strand, within Psyr_1707at 1932.649 kb on - strand, within Psyr_1707at 1932.737 kb on - strandat 1932.737 kb on - strandat 1932.822 kb on + strandat 1932.822 kb on + strandat 1932.822 kb on + strandat 1932.823 kb on - strandat 1932.823 kb on - strandat 1932.823 kb on - strandat 1932.823 kb on - strandat 1932.964 kb on + strandat 1932.964 kb on + strandat 1932.964 kb on + strandat 1932.964 kb on + strandat 1932.965 kb on - strandat 1932.968 kb on + strandat 1932.969 kb on - strandat 1933.355 kb on + strand, within Psyr_1708at 1933.356 kb on - strand, within Psyr_1708at 1933.356 kb on - strand, within Psyr_1708at 1933.356 kb on - strand, within Psyr_1708at 1933.356 kb on - strand, within Psyr_1708at 1933.356 kb on - strand, within Psyr_1708at 1933.529 kb on + strand, within Psyr_1708at 1933.529 kb on + strand, within Psyr_1708at 1933.529 kb on + strand, within Psyr_1708at 1933.530 kb on - strand, within Psyr_1708at 1933.530 kb on - strand, within Psyr_1708at 1933.652 kb on + strand, within Psyr_1708at 1933.652 kb on + strand, within Psyr_1708at 1933.653 kb on - strand, within Psyr_1708at 1933.653 kb on - strandat 1933.653 kb on - strand, within Psyr_1708at 1933.653 kb on - strand, within Psyr_1708at 1933.653 kb on - strand, within Psyr_1708at 1934.096 kb on + strand, within Psyr_1708at 1934.096 kb on + strand, within Psyr_1708at 1934.097 kb on - strand, within Psyr_1708at 1934.097 kb on - strand, within Psyr_1708at 1934.097 kb on - strand, within Psyr_1708at 1934.328 kb on + strand, within Psyr_1708at 1934.328 kb on + strand, within Psyr_1708at 1934.470 kb on - strandat 1934.543 kb on + strandat 1934.544 kb on - strandat 1934.544 kb on - strandat 1934.632 kb on + strandat 1934.669 kb on - strandat 1934.685 kb on + strandat 1934.685 kb on + strandat 1934.709 kb on + strandat 1934.713 kb on - strandat 1934.715 kb on + strandat 1934.719 kb on - strandat 1934.720 kb on + strandat 1934.831 kb on + strandat 1934.831 kb on + strandat 1934.854 kb on + strandat 1934.854 kb on + strandat 1934.856 kb on + strandat 1934.857 kb on - strandat 1934.900 kb on + strandat 1934.901 kb on - strandat 1934.901 kb on - strandat 1934.901 kb on - strandat 1934.901 kb on - strandat 1934.913 kb on - strandat 1934.913 kb on - strandat 1934.916 kb on + strandat 1934.916 kb on + strandat 1934.917 kb on - strandat 1934.917 kb on - strandat 1934.917 kb on - strandat 1935.149 kb on + strand, within Psyr_1709at 1935.149 kb on + strand, within Psyr_1709at 1935.149 kb on + strand, within Psyr_1709at 1935.150 kb on - strand, within Psyr_1709at 1935.150 kb on - strand, within Psyr_1709at 1935.150 kb on - strand, within Psyr_1709at 1935.150 kb on - strand, within Psyr_1709at 1935.150 kb on - strand, within Psyr_1709at 1935.150 kb on - strand, within Psyr_1709at 1935.206 kb on + strand, within Psyr_1709at 1935.206 kb on + strand, within Psyr_1709at 1935.206 kb on + strand, within Psyr_1709at 1935.206 kb on + strand, within Psyr_1709at 1935.207 kb on - strand, within Psyr_1709at 1935.207 kb on - strand, within Psyr_1709at 1935.209 kb on + strand, within Psyr_1709at 1935.209 kb on + strand, within Psyr_1709at 1935.209 kb on + strand, within Psyr_1709at 1935.209 kb on + strand, within Psyr_1709at 1935.209 kb on + strand, within Psyr_1709at 1935.209 kb on + strand, within Psyr_1709at 1935.209 kb on + strand, within Psyr_1709at 1935.209 kb on + strand, within Psyr_1709at 1935.210 kb on - strand, within Psyr_1709at 1935.210 kb on - strandat 1935.210 kb on - strand, within Psyr_1709at 1935.210 kb on - strand, within Psyr_1709at 1935.210 kb on - strand, within Psyr_1709at 1935.504 kb on - strand, within Psyr_1709at 1935.576 kb on - strand, within Psyr_1709at 1935.576 kb on - strand, within Psyr_1709at 1935.599 kb on + strand, within Psyr_1709at 1935.599 kb on + strand, within Psyr_1709at 1935.600 kb on - strand, within Psyr_1709at 1935.600 kb on - strand, within Psyr_1709

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM
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1,931,915 + Psyr_1706 0.89 +2.5
1,931,915 + Psyr_1706 0.89 +3.6
1,931,989 + -0.7
1,931,989 + -0.9
1,931,989 + +0.8
1,931,989 + -0.7
1,931,989 + +2.0
1,931,990 - -1.3
1,931,990 - +1.4
1,932,040 - -1.7
1,932,229 - Psyr_1707 0.23 -0.5
1,932,375 + Psyr_1707 0.43 -1.8
1,932,459 - Psyr_1707 0.55 +0.6
1,932,518 + Psyr_1707 0.63 -0.9
1,932,518 + Psyr_1707 0.63 -0.0
1,932,519 - Psyr_1707 0.63 +0.3
1,932,649 - Psyr_1707 0.81 -1.4
1,932,649 - Psyr_1707 0.81 -0.7
1,932,649 - Psyr_1707 0.81 -0.7
1,932,649 - Psyr_1707 0.81 +0.5
1,932,649 - Psyr_1707 0.81 -0.5
1,932,737 - -0.8
1,932,737 - +0.2
1,932,822 + +0.8
1,932,822 + -0.7
1,932,822 + +0.9
1,932,823 - -0.7
1,932,823 - +0.3
1,932,823 - -0.6
1,932,823 - -1.7
1,932,964 + +0.9
1,932,964 + -0.4
1,932,964 + +2.6
1,932,964 + -1.7
1,932,965 - +0.5
1,932,968 + -1.5
1,932,969 - +0.1
1,933,355 + Psyr_1708 0.27 -0.3
1,933,356 - Psyr_1708 0.27 -0.1
1,933,356 - Psyr_1708 0.27 -2.8
1,933,356 - Psyr_1708 0.27 +0.3
1,933,356 - Psyr_1708 0.27 +0.6
1,933,356 - Psyr_1708 0.27 -0.2
1,933,529 + Psyr_1708 0.37 -0.2
1,933,529 + Psyr_1708 0.37 +0.2
1,933,529 + Psyr_1708 0.37 -1.2
1,933,530 - Psyr_1708 0.37 -0.1
1,933,530 - Psyr_1708 0.37 -1.8
1,933,652 + Psyr_1708 0.44 -1.7
1,933,652 + Psyr_1708 0.44 -0.6
1,933,653 - Psyr_1708 0.45 -0.2
1,933,653 - +1.1
1,933,653 - Psyr_1708 0.45 -0.8
1,933,653 - Psyr_1708 0.45 -0.8
1,933,653 - Psyr_1708 0.45 +1.1
1,934,096 + Psyr_1708 0.70 -0.6
1,934,096 + Psyr_1708 0.70 +0.2
1,934,097 - Psyr_1708 0.70 -0.7
1,934,097 - Psyr_1708 0.70 -0.7
1,934,097 - Psyr_1708 0.70 -0.9
1,934,328 + Psyr_1708 0.83 -0.5
1,934,328 + Psyr_1708 0.83 -1.3
1,934,470 - +1.0
1,934,543 + +0.5
1,934,544 - +0.5
1,934,544 - -0.5
1,934,632 + +0.1
1,934,669 - +1.0
1,934,685 + -2.3
1,934,685 + -3.1
1,934,709 + +0.9
1,934,713 - +0.4
1,934,715 + +1.4
1,934,719 - -0.9
1,934,720 + +3.6
1,934,831 + +0.4
1,934,831 + -1.6
1,934,854 + -1.7
1,934,854 + +0.3
1,934,856 + +0.5
1,934,857 - -0.1
1,934,900 + +0.5
1,934,901 - -2.4
1,934,901 - +0.8
1,934,901 - +0.5
1,934,901 - -2.0
1,934,913 - +0.8
1,934,913 - +0.2
1,934,916 + -0.7
1,934,916 + -1.9
1,934,917 - +1.5
1,934,917 - +0.1
1,934,917 - +2.4
1,935,149 + Psyr_1709 0.24 +0.1
1,935,149 + Psyr_1709 0.24 -0.7
1,935,149 + Psyr_1709 0.24 +3.4
1,935,150 - Psyr_1709 0.24 +1.5
1,935,150 - Psyr_1709 0.24 -0.6
1,935,150 - Psyr_1709 0.24 +0.6
1,935,150 - Psyr_1709 0.24 +0.7
1,935,150 - Psyr_1709 0.24 +1.2
1,935,150 - Psyr_1709 0.24 +1.4
1,935,206 + Psyr_1709 0.28 -2.3
1,935,206 + Psyr_1709 0.28 -1.8
1,935,206 + Psyr_1709 0.28 -0.9
1,935,206 + Psyr_1709 0.28 -1.5
1,935,207 - Psyr_1709 0.28 +1.4
1,935,207 - Psyr_1709 0.28 -0.5
1,935,209 + Psyr_1709 0.29 +0.2
1,935,209 + Psyr_1709 0.29 -1.6
1,935,209 + Psyr_1709 0.29 -0.0
1,935,209 + Psyr_1709 0.29 +0.1
1,935,209 + Psyr_1709 0.29 -0.2
1,935,209 + Psyr_1709 0.29 +0.6
1,935,209 + Psyr_1709 0.29 -0.1
1,935,209 + Psyr_1709 0.29 +0.2
1,935,210 - Psyr_1709 0.29 -0.3
1,935,210 - +0.5
1,935,210 - Psyr_1709 0.29 +0.5
1,935,210 - Psyr_1709 0.29 +0.6
1,935,210 - Psyr_1709 0.29 -1.1
1,935,504 - Psyr_1709 0.51 -0.4
1,935,576 - Psyr_1709 0.56 -0.4
1,935,576 - Psyr_1709 0.56 -1.1
1,935,599 + Psyr_1709 0.58 +1.5
1,935,599 + Psyr_1709 0.58 +0.4
1,935,600 - Psyr_1709 0.58 -0.0
1,935,600 - Psyr_1709 0.58 -0.8

Or see this region's nucleotide sequence