Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1576

Experiment: KB with Ginkgolide A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1574 and Psyr_1575 are separated by 132 nucleotidesPsyr_1575 and Psyr_1576 are separated by 76 nucleotidesPsyr_1576 and Psyr_1577 are separated by 46 nucleotidesPsyr_1577 and Psyr_1578 are separated by 37 nucleotides Psyr_1574: Psyr_1574 - oligopeptidase B, Serine peptidase, MEROPS family S09A, at 1,768,583 to 1,770,643 _1574 Psyr_1575: Psyr_1575 - conserved hypothetical protein, at 1,770,776 to 1,771,252 _1575 Psyr_1576: Psyr_1576 - Glutamine amidotransferase, class-II, at 1,771,329 to 1,772,129 _1576 Psyr_1577: Psyr_1577 - conserved hypothetical protein, at 1,772,176 to 1,772,700 _1577 Psyr_1578: Psyr_1578 - conserved hypothetical protein, at 1,772,738 to 1,773,454 _1578 Position (kb) 1771 1772 1773Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1770.369 kb on + strand, within Psyr_1574at 1770.370 kb on - strand, within Psyr_1574at 1770.370 kb on - strand, within Psyr_1574at 1770.396 kb on + strand, within Psyr_1574at 1770.397 kb on - strand, within Psyr_1574at 1770.397 kb on - strand, within Psyr_1574at 1770.399 kb on + strand, within Psyr_1574at 1770.405 kb on + strand, within Psyr_1574at 1770.406 kb on - strand, within Psyr_1574at 1770.406 kb on - strand, within Psyr_1574at 1770.580 kb on - strandat 1770.659 kb on - strandat 1770.678 kb on + strandat 1770.743 kb on - strandat 1770.763 kb on + strandat 1770.791 kb on + strandat 1770.920 kb on - strand, within Psyr_1575at 1770.920 kb on - strand, within Psyr_1575at 1770.920 kb on - strand, within Psyr_1575at 1771.009 kb on + strand, within Psyr_1575at 1771.010 kb on - strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.040 kb on + strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.041 kb on - strand, within Psyr_1575at 1771.045 kb on + strand, within Psyr_1575at 1771.045 kb on + strand, within Psyr_1575at 1771.045 kb on + strand, within Psyr_1575at 1771.045 kb on + strand, within Psyr_1575at 1771.045 kb on + strand, within Psyr_1575at 1771.045 kb on + strand, within Psyr_1575at 1771.045 kb on + strand, within Psyr_1575at 1771.045 kb on + strand, within Psyr_1575at 1771.045 kb on + strand, within Psyr_1575at 1771.046 kb on - strand, within Psyr_1575at 1771.046 kb on - strand, within Psyr_1575at 1771.046 kb on - strand, within Psyr_1575at 1771.046 kb on - strand, within Psyr_1575at 1771.046 kb on - strand, within Psyr_1575at 1771.046 kb on - strand, within Psyr_1575at 1771.046 kb on - strand, within Psyr_1575at 1771.187 kb on + strand, within Psyr_1575at 1771.251 kb on - strandat 1771.339 kb on + strandat 1771.449 kb on + strand, within Psyr_1576at 1771.450 kb on - strand, within Psyr_1576at 1771.450 kb on - strand, within Psyr_1576at 1771.559 kb on + strand, within Psyr_1576at 1771.632 kb on - strand, within Psyr_1576at 1771.827 kb on - strand, within Psyr_1576at 1771.827 kb on - strand, within Psyr_1576at 1771.883 kb on + strand, within Psyr_1576at 1772.130 kb on + strandat 1772.131 kb on - strandat 1772.131 kb on - strandat 1772.149 kb on - strandat 1772.188 kb on + strandat 1772.257 kb on + strand, within Psyr_1577at 1772.258 kb on - strand, within Psyr_1577at 1772.312 kb on - strand, within Psyr_1577at 1772.314 kb on - strand, within Psyr_1577at 1772.368 kb on + strand, within Psyr_1577at 1772.369 kb on - strand, within Psyr_1577at 1772.547 kb on + strand, within Psyr_1577at 1772.547 kb on + strand, within Psyr_1577at 1772.547 kb on + strand, within Psyr_1577at 1772.547 kb on + strand, within Psyr_1577at 1772.547 kb on + strand, within Psyr_1577at 1772.547 kb on + strand, within Psyr_1577at 1772.547 kb on + strand, within Psyr_1577at 1772.547 kb on + strand, within Psyr_1577at 1772.547 kb on + strand, within Psyr_1577at 1772.548 kb on - strand, within Psyr_1577at 1772.548 kb on - strand, within Psyr_1577at 1772.548 kb on - strand, within Psyr_1577at 1772.548 kb on - strand, within Psyr_1577at 1772.739 kb on + strandat 1772.739 kb on + strandat 1772.739 kb on + strandat 1772.739 kb on + strandat 1772.739 kb on + strandat 1772.739 kb on + strandat 1772.739 kb on + strandat 1772.739 kb on + strandat 1772.739 kb on + strandat 1772.740 kb on - strandat 1772.740 kb on - strandat 1772.740 kb on - strandat 1772.740 kb on - strandat 1772.740 kb on - strandat 1772.740 kb on - strandat 1772.740 kb on - strandat 1772.740 kb on - strandat 1772.740 kb on - strandat 1772.740 kb on - strandat 1772.741 kb on + strandat 1772.741 kb on + strandat 1772.741 kb on + strandat 1772.741 kb on + strandat 1772.741 kb on + strandat 1772.741 kb on + strandat 1772.741 kb on + strandat 1772.742 kb on - strandat 1772.742 kb on - strandat 1772.742 kb on - strandat 1772.742 kb on - strandat 1772.742 kb on - strandat 1772.761 kb on + strandat 1772.761 kb on + strandat 1772.761 kb on + strandat 1772.762 kb on - strandat 1772.762 kb on - strandat 1772.762 kb on - strandat 1772.765 kb on + strandat 1772.765 kb on + strandat 1772.765 kb on + strandat 1772.765 kb on + strandat 1772.765 kb on + strandat 1772.766 kb on - strandat 1772.766 kb on - strandat 1772.766 kb on - strandat 1772.766 kb on - strandat 1772.769 kb on + strandat 1772.888 kb on + strand, within Psyr_1578at 1772.888 kb on + strand, within Psyr_1578at 1772.888 kb on + strand, within Psyr_1578at 1772.889 kb on - strand, within Psyr_1578at 1772.889 kb on - strand, within Psyr_1578at 1772.949 kb on + strand, within Psyr_1578at 1772.949 kb on + strand, within Psyr_1578at 1772.949 kb on + strand, within Psyr_1578at 1772.950 kb on - strand, within Psyr_1578at 1772.975 kb on + strand, within Psyr_1578at 1772.976 kb on - strand, within Psyr_1578at 1772.976 kb on - strand, within Psyr_1578at 1773.062 kb on + strand, within Psyr_1578at 1773.063 kb on - strand, within Psyr_1578at 1773.063 kb on - strand, within Psyr_1578at 1773.063 kb on - strand, within Psyr_1578at 1773.063 kb on - strand, within Psyr_1578at 1773.066 kb on + strand, within Psyr_1578

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM
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1,770,369 + Psyr_1574 0.87 +0.3
1,770,370 - Psyr_1574 0.87 +0.8
1,770,370 - Psyr_1574 0.87 +0.2
1,770,396 + Psyr_1574 0.88 +1.8
1,770,397 - Psyr_1574 0.88 -2.7
1,770,397 - Psyr_1574 0.88 -2.5
1,770,399 + Psyr_1574 0.88 +0.6
1,770,405 + Psyr_1574 0.88 -0.3
1,770,406 - Psyr_1574 0.88 -0.7
1,770,406 - Psyr_1574 0.88 +0.5
1,770,580 - -2.5
1,770,659 - +0.2
1,770,678 + +0.9
1,770,743 - +0.8
1,770,763 + -0.8
1,770,791 + -0.6
1,770,920 - Psyr_1575 0.30 -0.9
1,770,920 - Psyr_1575 0.30 -1.0
1,770,920 - Psyr_1575 0.30 -0.4
1,771,009 + Psyr_1575 0.49 -0.3
1,771,010 - Psyr_1575 0.49 +0.3
1,771,040 + Psyr_1575 0.55 +0.2
1,771,040 + Psyr_1575 0.55 -0.3
1,771,040 + Psyr_1575 0.55 -3.2
1,771,040 + Psyr_1575 0.55 +2.8
1,771,040 + Psyr_1575 0.55 -0.4
1,771,040 + Psyr_1575 0.55 -0.6
1,771,040 + Psyr_1575 0.55 -0.3
1,771,040 + Psyr_1575 0.55 +1.0
1,771,040 + Psyr_1575 0.55 +1.2
1,771,040 + Psyr_1575 0.55 -0.4
1,771,040 + Psyr_1575 0.55 +1.2
1,771,040 + Psyr_1575 0.55 -0.6
1,771,040 + Psyr_1575 0.55 -0.8
1,771,040 + Psyr_1575 0.55 +1.2
1,771,040 + Psyr_1575 0.55 +0.1
1,771,040 + Psyr_1575 0.55 -0.5
1,771,040 + Psyr_1575 0.55 +0.3
1,771,040 + Psyr_1575 0.55 +0.6
1,771,040 + Psyr_1575 0.55 -0.0
1,771,040 + Psyr_1575 0.55 -0.4
1,771,040 + Psyr_1575 0.55 -0.8
1,771,040 + Psyr_1575 0.55 +1.5
1,771,040 + Psyr_1575 0.55 +0.3
1,771,040 + Psyr_1575 0.55 -1.2
1,771,040 + Psyr_1575 0.55 +0.0
1,771,040 + Psyr_1575 0.55 +2.2
1,771,041 - Psyr_1575 0.56 +1.3
1,771,041 - Psyr_1575 0.56 -0.9
1,771,041 - Psyr_1575 0.56 +0.1
1,771,041 - Psyr_1575 0.56 -1.2
1,771,041 - Psyr_1575 0.56 +0.5
1,771,041 - Psyr_1575 0.56 -3.2
1,771,041 - Psyr_1575 0.56 -0.2
1,771,041 - Psyr_1575 0.56 +0.3
1,771,041 - Psyr_1575 0.56 -1.6
1,771,041 - Psyr_1575 0.56 +1.8
1,771,041 - Psyr_1575 0.56 +1.4
1,771,041 - Psyr_1575 0.56 -0.5
1,771,041 - Psyr_1575 0.56 +2.4
1,771,041 - Psyr_1575 0.56 +0.2
1,771,041 - Psyr_1575 0.56 -0.4
1,771,041 - Psyr_1575 0.56 +0.4
1,771,041 - Psyr_1575 0.56 -1.6
1,771,041 - Psyr_1575 0.56 -0.8
1,771,041 - Psyr_1575 0.56 -1.1
1,771,041 - Psyr_1575 0.56 -3.6
1,771,041 - Psyr_1575 0.56 -1.4
1,771,041 - Psyr_1575 0.56 +1.9
1,771,041 - Psyr_1575 0.56 -2.9
1,771,045 + Psyr_1575 0.56 -0.8
1,771,045 + Psyr_1575 0.56 -1.2
1,771,045 + Psyr_1575 0.56 -1.4
1,771,045 + Psyr_1575 0.56 -2.6
1,771,045 + Psyr_1575 0.56 +0.2
1,771,045 + Psyr_1575 0.56 -0.6
1,771,045 + Psyr_1575 0.56 -1.8
1,771,045 + Psyr_1575 0.56 -0.4
1,771,045 + Psyr_1575 0.56 +0.4
1,771,046 - Psyr_1575 0.57 +3.5
1,771,046 - Psyr_1575 0.57 +0.9
1,771,046 - Psyr_1575 0.57 +0.4
1,771,046 - Psyr_1575 0.57 -0.9
1,771,046 - Psyr_1575 0.57 +0.4
1,771,046 - Psyr_1575 0.57 -0.6
1,771,046 - Psyr_1575 0.57 +1.3
1,771,187 + Psyr_1575 0.86 +0.4
1,771,251 - +0.5
1,771,339 + +1.9
1,771,449 + Psyr_1576 0.15 +1.2
1,771,450 - Psyr_1576 0.15 -0.8
1,771,450 - Psyr_1576 0.15 +0.1
1,771,559 + Psyr_1576 0.29 +1.2
1,771,632 - Psyr_1576 0.38 +0.6
1,771,827 - Psyr_1576 0.62 -1.5
1,771,827 - Psyr_1576 0.62 -0.5
1,771,883 + Psyr_1576 0.69 -1.6
1,772,130 + +0.6
1,772,131 - +1.2
1,772,131 - +0.0
1,772,149 - -2.2
1,772,188 + +0.2
1,772,257 + Psyr_1577 0.15 -2.2
1,772,258 - Psyr_1577 0.16 +2.8
1,772,312 - Psyr_1577 0.26 +0.5
1,772,314 - Psyr_1577 0.26 +0.4
1,772,368 + Psyr_1577 0.37 +0.0
1,772,369 - Psyr_1577 0.37 +0.2
1,772,547 + Psyr_1577 0.71 -0.3
1,772,547 + Psyr_1577 0.71 +1.4
1,772,547 + Psyr_1577 0.71 +3.2
1,772,547 + Psyr_1577 0.71 +0.8
1,772,547 + Psyr_1577 0.71 +1.0
1,772,547 + Psyr_1577 0.71 -0.7
1,772,547 + Psyr_1577 0.71 -0.8
1,772,547 + Psyr_1577 0.71 -2.4
1,772,547 + Psyr_1577 0.71 +2.0
1,772,548 - Psyr_1577 0.71 +0.2
1,772,548 - Psyr_1577 0.71 -0.3
1,772,548 - Psyr_1577 0.71 -0.1
1,772,548 - Psyr_1577 0.71 -1.3
1,772,739 + -2.6
1,772,739 + +1.2
1,772,739 + +0.8
1,772,739 + -1.6
1,772,739 + -2.4
1,772,739 + -0.5
1,772,739 + -0.9
1,772,739 + -1.0
1,772,739 + -1.2
1,772,740 - +0.2
1,772,740 - +2.2
1,772,740 - -0.4
1,772,740 - -0.0
1,772,740 - +1.0
1,772,740 - -0.5
1,772,740 - -2.0
1,772,740 - +0.2
1,772,740 - -0.6
1,772,740 - -2.0
1,772,741 + -0.3
1,772,741 + +3.8
1,772,741 + +0.9
1,772,741 + +1.6
1,772,741 + -2.2
1,772,741 + -0.2
1,772,741 + +1.2
1,772,742 - +0.2
1,772,742 - +1.3
1,772,742 - +3.0
1,772,742 - -2.2
1,772,742 - +0.3
1,772,761 + -0.2
1,772,761 + +1.9
1,772,761 + -0.9
1,772,762 - -0.1
1,772,762 - -1.2
1,772,762 - +0.5
1,772,765 + -1.8
1,772,765 + -0.2
1,772,765 + -0.2
1,772,765 + +0.8
1,772,765 + -0.3
1,772,766 - +0.3
1,772,766 - +0.2
1,772,766 - -1.8
1,772,766 - +0.0
1,772,769 + +0.6
1,772,888 + Psyr_1578 0.21 -1.3
1,772,888 + Psyr_1578 0.21 +0.9
1,772,888 + Psyr_1578 0.21 -0.5
1,772,889 - Psyr_1578 0.21 -0.4
1,772,889 - Psyr_1578 0.21 -1.7
1,772,949 + Psyr_1578 0.29 -0.0
1,772,949 + Psyr_1578 0.29 -0.6
1,772,949 + Psyr_1578 0.29 +1.2
1,772,950 - Psyr_1578 0.30 -0.1
1,772,975 + Psyr_1578 0.33 -0.8
1,772,976 - Psyr_1578 0.33 -0.8
1,772,976 - Psyr_1578 0.33 -0.8
1,773,062 + Psyr_1578 0.45 -1.3
1,773,063 - Psyr_1578 0.45 +2.5
1,773,063 - Psyr_1578 0.45 -0.9
1,773,063 - Psyr_1578 0.45 -0.9
1,773,063 - Psyr_1578 0.45 +0.0
1,773,066 + Psyr_1578 0.46 +0.6

Or see this region's nucleotide sequence