Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1506 and Psyr_1507 are separated by 338 nucleotides Psyr_1507 and Psyr_1508 are separated by 104 nucleotides
Psyr_1506: Psyr_1506 - Cation efflux protein, at 1,692,284 to 1,693,237
_1506
Psyr_1507: Psyr_1507 - hypothetical protein, at 1,693,576 to 1,694,016
_1507
Psyr_1508: Psyr_1508 - Phage integrase:Phage integrase, N-terminal SAM-like protein, at 1,694,121 to 1,695,080
_1508
Position (kb) 1693
1694
1695 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1692.607 kb on + strand, within Psyr_1506 at 1692.608 kb on - strand, within Psyr_1506 at 1692.618 kb on + strand, within Psyr_1506 at 1692.619 kb on - strand, within Psyr_1506 at 1692.621 kb on + strand, within Psyr_1506 at 1692.621 kb on + strand, within Psyr_1506 at 1692.621 kb on + strand, within Psyr_1506 at 1692.621 kb on + strand, within Psyr_1506 at 1692.622 kb on - strand, within Psyr_1506 at 1692.622 kb on - strand, within Psyr_1506 at 1692.622 kb on - strand, within Psyr_1506 at 1692.622 kb on - strand, within Psyr_1506 at 1692.667 kb on + strand, within Psyr_1506 at 1692.667 kb on + strand, within Psyr_1506 at 1692.668 kb on - strand, within Psyr_1506 at 1692.668 kb on - strand, within Psyr_1506 at 1692.670 kb on + strand, within Psyr_1506 at 1692.671 kb on - strand, within Psyr_1506 at 1692.708 kb on + strand, within Psyr_1506 at 1692.708 kb on + strand, within Psyr_1506 at 1692.796 kb on + strand, within Psyr_1506 at 1692.796 kb on + strand, within Psyr_1506 at 1692.823 kb on + strand, within Psyr_1506 at 1692.823 kb on + strand, within Psyr_1506 at 1692.823 kb on + strand, within Psyr_1506 at 1692.823 kb on + strand, within Psyr_1506 at 1692.823 kb on + strand, within Psyr_1506 at 1692.823 kb on + strand, within Psyr_1506 at 1692.823 kb on + strand, within Psyr_1506 at 1692.824 kb on - strand, within Psyr_1506 at 1692.824 kb on - strand, within Psyr_1506 at 1692.824 kb on - strand, within Psyr_1506 at 1692.824 kb on - strand, within Psyr_1506 at 1692.824 kb on - strand, within Psyr_1506 at 1692.824 kb on - strand, within Psyr_1506 at 1692.833 kb on + strand, within Psyr_1506 at 1692.833 kb on + strand, within Psyr_1506 at 1692.833 kb on + strand, within Psyr_1506 at 1692.833 kb on + strand, within Psyr_1506 at 1692.834 kb on - strand, within Psyr_1506 at 1692.834 kb on - strand, within Psyr_1506 at 1692.834 kb on - strand, within Psyr_1506 at 1692.834 kb on - strand, within Psyr_1506 at 1692.834 kb on - strand, within Psyr_1506 at 1692.834 kb on - strand, within Psyr_1506 at 1693.141 kb on + strand, within Psyr_1506 at 1693.142 kb on - strand at 1693.142 kb on - strand at 1693.193 kb on - strand at 1693.231 kb on + strand at 1693.231 kb on + strand at 1693.232 kb on - strand at 1693.232 kb on - strand at 1693.232 kb on - strand at 1693.235 kb on + strand at 1693.235 kb on + strand at 1693.235 kb on + strand at 1693.235 kb on + strand at 1693.235 kb on + strand at 1693.235 kb on + strand at 1693.235 kb on + strand at 1693.236 kb on - strand at 1693.236 kb on - strand at 1693.236 kb on - strand at 1693.236 kb on - strand at 1693.236 kb on - strand at 1693.236 kb on - strand at 1693.236 kb on - strand at 1693.294 kb on - strand at 1693.294 kb on - strand at 1693.302 kb on + strand at 1693.302 kb on + strand at 1693.302 kb on + strand at 1693.303 kb on - strand at 1693.303 kb on - strand at 1693.303 kb on - strand at 1693.303 kb on - strand at 1693.306 kb on - strand at 1693.348 kb on + strand at 1693.425 kb on + strand at 1693.496 kb on - strand at 1693.496 kb on - strand at 1693.500 kb on - strand at 1693.500 kb on - strand at 1693.500 kb on - strand at 1693.542 kb on + strand at 1693.542 kb on + strand at 1693.542 kb on + strand at 1693.542 kb on + strand at 1693.542 kb on + strand at 1693.542 kb on + strand at 1693.542 kb on + strand at 1693.542 kb on + strand at 1693.543 kb on - strand at 1693.543 kb on - strand at 1693.543 kb on - strand at 1693.548 kb on - strand at 1693.556 kb on - strand at 1693.575 kb on + strand at 1693.575 kb on + strand at 1693.576 kb on - strand at 1693.576 kb on - strand at 1693.576 kb on - strand at 1693.576 kb on - strand at 1693.581 kb on + strand at 1693.581 kb on + strand at 1693.582 kb on - strand at 1693.582 kb on - strand at 1693.582 kb on - strand at 1693.603 kb on + strand at 1693.604 kb on - strand at 1693.604 kb on - strand at 1693.714 kb on + strand, within Psyr_1507 at 1693.714 kb on + strand, within Psyr_1507 at 1693.715 kb on - strand, within Psyr_1507 at 1693.762 kb on + strand, within Psyr_1507 at 1693.792 kb on + strand, within Psyr_1507 at 1693.792 kb on + strand, within Psyr_1507 at 1693.793 kb on - strand, within Psyr_1507 at 1693.886 kb on + strand, within Psyr_1507 at 1693.886 kb on + strand, within Psyr_1507 at 1693.983 kb on + strand at 1693.983 kb on + strand at 1694.024 kb on + strand at 1694.024 kb on + strand at 1694.024 kb on + strand at 1694.024 kb on + strand at 1694.024 kb on + strand at 1694.025 kb on - strand at 1694.025 kb on - strand at 1694.025 kb on - strand at 1694.088 kb on + strand at 1694.088 kb on + strand at 1694.089 kb on - strand at 1694.089 kb on - strand at 1694.089 kb on - strand at 1694.091 kb on + strand at 1694.091 kb on + strand at 1694.092 kb on - strand at 1694.097 kb on + strand at 1694.097 kb on + strand at 1694.097 kb on + strand at 1694.097 kb on + strand at 1694.098 kb on - strand at 1694.098 kb on - strand at 1694.113 kb on + strand at 1694.114 kb on - strand at 1694.114 kb on - strand at 1694.253 kb on + strand, within Psyr_1508 at 1694.266 kb on + strand, within Psyr_1508 at 1694.266 kb on + strand, within Psyr_1508 at 1694.266 kb on + strand, within Psyr_1508 at 1694.266 kb on + strand, within Psyr_1508 at 1694.267 kb on - strand, within Psyr_1508 at 1694.267 kb on - strand, within Psyr_1508 at 1694.267 kb on - strand, within Psyr_1508 at 1694.678 kb on + strand, within Psyr_1508 at 1694.750 kb on + strand, within Psyr_1508 at 1694.750 kb on + strand, within Psyr_1508 at 1694.750 kb on + strand, within Psyr_1508 at 1694.750 kb on + strand, within Psyr_1508 at 1694.750 kb on + strand, within Psyr_1508 at 1694.750 kb on + strand, within Psyr_1508 at 1694.750 kb on + strand, within Psyr_1508 at 1694.750 kb on + strand, within Psyr_1508 at 1694.751 kb on - strand, within Psyr_1508 at 1694.751 kb on - strand, within Psyr_1508 at 1694.751 kb on - strand, within Psyr_1508 at 1694.754 kb on + strand, within Psyr_1508 at 1694.754 kb on + strand, within Psyr_1508 at 1694.754 kb on + strand, within Psyr_1508 at 1694.754 kb on + strand, within Psyr_1508 at 1694.754 kb on + strand, within Psyr_1508 at 1694.754 kb on + strand, within Psyr_1508 at 1694.754 kb on + strand, within Psyr_1508 at 1694.754 kb on + strand, within Psyr_1508 at 1694.755 kb on - strand, within Psyr_1508 at 1694.755 kb on - strand, within Psyr_1508 at 1694.755 kb on - strand, within Psyr_1508 at 1694.755 kb on - strand, within Psyr_1508 at 1694.755 kb on - strand, within Psyr_1508 at 1694.755 kb on - strand, within Psyr_1508 at 1694.755 kb on - strand, within Psyr_1508 at 1694.755 kb on - strand, within Psyr_1508 at 1694.760 kb on + strand, within Psyr_1508 at 1694.760 kb on + strand, within Psyr_1508 at 1694.760 kb on + strand, within Psyr_1508 at 1694.760 kb on + strand, within Psyr_1508 at 1694.760 kb on + strand, within Psyr_1508 at 1694.760 kb on + strand, within Psyr_1508 at 1694.760 kb on + strand, within Psyr_1508 at 1694.760 kb on + strand, within Psyr_1508 at 1694.760 kb on + strand, within Psyr_1508 at 1694.760 kb on + strand, within Psyr_1508 at 1694.760 kb on + strand, within Psyr_1508 at 1694.760 kb on + strand, within Psyr_1508 at 1694.760 kb on + strand, within Psyr_1508 at 1694.760 kb on + strand, within Psyr_1508 at 1694.760 kb on + strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.761 kb on - strand, within Psyr_1508 at 1694.762 kb on + strand, within Psyr_1508 at 1694.762 kb on + strand, within Psyr_1508 at 1694.762 kb on + strand, within Psyr_1508 at 1694.763 kb on - strand, within Psyr_1508 at 1694.763 kb on - strand, within Psyr_1508 at 1694.807 kb on + strand, within Psyr_1508 at 1694.808 kb on - strand, within Psyr_1508 at 1694.859 kb on + strand, within Psyr_1508 at 1694.859 kb on + strand, within Psyr_1508 at 1694.860 kb on - strand, within Psyr_1508 at 1694.860 kb on - strand, within Psyr_1508 at 1694.860 kb on - strand, within Psyr_1508 at 1694.860 kb on - strand, within Psyr_1508 at 1694.862 kb on - strand, within Psyr_1508 at 1694.862 kb on - strand, within Psyr_1508 at 1694.862 kb on - strand, within Psyr_1508 at 1694.943 kb on - strand, within Psyr_1508
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 1,692,607 + Psyr_1506 0.34 -1.4 1,692,608 - Psyr_1506 0.34 -0.2 1,692,618 + Psyr_1506 0.35 -1.0 1,692,619 - Psyr_1506 0.35 +0.5 1,692,621 + Psyr_1506 0.35 -1.0 1,692,621 + Psyr_1506 0.35 -0.4 1,692,621 + Psyr_1506 0.35 -0.4 1,692,621 + Psyr_1506 0.35 -1.4 1,692,622 - Psyr_1506 0.35 +0.0 1,692,622 - Psyr_1506 0.35 +1.2 1,692,622 - Psyr_1506 0.35 +0.3 1,692,622 - Psyr_1506 0.35 -0.4 1,692,667 + Psyr_1506 0.40 +0.0 1,692,667 + Psyr_1506 0.40 -2.4 1,692,668 - Psyr_1506 0.40 +0.0 1,692,668 - Psyr_1506 0.40 +2.0 1,692,670 + Psyr_1506 0.40 -0.6 1,692,671 - Psyr_1506 0.41 -2.3 1,692,708 + Psyr_1506 0.44 -0.2 1,692,708 + Psyr_1506 0.44 +1.0 1,692,796 + Psyr_1506 0.54 +0.2 1,692,796 + Psyr_1506 0.54 +0.0 1,692,823 + Psyr_1506 0.56 -2.2 1,692,823 + Psyr_1506 0.56 +0.6 1,692,823 + Psyr_1506 0.56 -1.1 1,692,823 + Psyr_1506 0.56 -1.4 1,692,823 + Psyr_1506 0.56 +0.6 1,692,823 + Psyr_1506 0.56 +1.0 1,692,823 + Psyr_1506 0.56 -1.4 1,692,824 - Psyr_1506 0.57 -0.7 1,692,824 - Psyr_1506 0.57 +0.0 1,692,824 - Psyr_1506 0.57 -1.0 1,692,824 - Psyr_1506 0.57 -0.2 1,692,824 - Psyr_1506 0.57 +2.8 1,692,824 - Psyr_1506 0.57 +0.5 1,692,833 + Psyr_1506 0.58 -3.5 1,692,833 + Psyr_1506 0.58 +1.2 1,692,833 + Psyr_1506 0.58 -0.6 1,692,833 + Psyr_1506 0.58 +0.5 1,692,834 - Psyr_1506 0.58 +0.8 1,692,834 - Psyr_1506 0.58 +1.0 1,692,834 - Psyr_1506 0.58 -2.4 1,692,834 - Psyr_1506 0.58 -0.4 1,692,834 - Psyr_1506 0.58 -0.3 1,692,834 - Psyr_1506 0.58 +0.8 1,693,141 + Psyr_1506 0.90 -0.1 1,693,142 - +0.6 1,693,142 - -0.4 1,693,193 - -0.3 1,693,231 + -3.2 1,693,231 + +1.1 1,693,232 - -1.9 1,693,232 - -0.4 1,693,232 - -0.7 1,693,235 + -0.6 1,693,235 + -1.0 1,693,235 + -0.7 1,693,235 + +0.1 1,693,235 + -0.8 1,693,235 + +0.2 1,693,235 + +0.4 1,693,236 - -0.1 1,693,236 - +1.1 1,693,236 - -0.5 1,693,236 - +1.3 1,693,236 - +1.9 1,693,236 - +1.2 1,693,236 - -0.6 1,693,294 - +0.3 1,693,294 - -0.6 1,693,302 + +0.8 1,693,302 + -0.5 1,693,302 + -1.5 1,693,303 - +0.4 1,693,303 - -1.1 1,693,303 - -0.4 1,693,303 - -0.4 1,693,306 - +1.6 1,693,348 + -0.4 1,693,425 + +0.5 1,693,496 - +0.8 1,693,496 - -0.3 1,693,500 - +0.3 1,693,500 - +1.6 1,693,500 - -0.9 1,693,542 + +1.2 1,693,542 + -0.8 1,693,542 + -0.1 1,693,542 + +1.0 1,693,542 + +1.2 1,693,542 + +0.6 1,693,542 + +1.2 1,693,542 + -0.2 1,693,543 - -2.4 1,693,543 - -1.5 1,693,543 - -2.4 1,693,548 - -1.1 1,693,556 - +0.6 1,693,575 + -0.1 1,693,575 + -0.2 1,693,576 - -0.8 1,693,576 - -0.9 1,693,576 - -3.7 1,693,576 - +1.4 1,693,581 + -1.6 1,693,581 + +0.1 1,693,582 - -1.2 1,693,582 - -0.2 1,693,582 - +0.0 1,693,603 + +2.1 1,693,604 - -0.7 1,693,604 - -0.1 1,693,714 + Psyr_1507 0.31 +0.7 1,693,714 + Psyr_1507 0.31 -0.9 1,693,715 - Psyr_1507 0.32 -0.9 1,693,762 + Psyr_1507 0.42 -1.0 1,693,792 + Psyr_1507 0.49 -0.6 1,693,792 + Psyr_1507 0.49 +0.1 1,693,793 - Psyr_1507 0.49 +1.2 1,693,886 + Psyr_1507 0.70 -0.2 1,693,886 + Psyr_1507 0.70 -1.9 1,693,983 + -1.1 1,693,983 + +0.9 1,694,024 + +0.5 1,694,024 + +0.6 1,694,024 + +0.7 1,694,024 + +0.8 1,694,024 + -1.5 1,694,025 - -0.1 1,694,025 - +0.1 1,694,025 - -0.2 1,694,088 + -0.7 1,694,088 + +0.7 1,694,089 - -1.4 1,694,089 - +0.2 1,694,089 - -1.4 1,694,091 + -1.4 1,694,091 + -0.6 1,694,092 - +0.6 1,694,097 + -1.9 1,694,097 + +0.2 1,694,097 + +0.7 1,694,097 + +0.3 1,694,098 - -0.4 1,694,098 - -1.4 1,694,113 + +0.7 1,694,114 - +0.1 1,694,114 - -1.0 1,694,253 + Psyr_1508 0.14 -1.1 1,694,266 + Psyr_1508 0.15 +0.7 1,694,266 + Psyr_1508 0.15 -0.6 1,694,266 + Psyr_1508 0.15 +0.9 1,694,266 + Psyr_1508 0.15 -0.2 1,694,267 - Psyr_1508 0.15 -1.0 1,694,267 - Psyr_1508 0.15 -1.0 1,694,267 - Psyr_1508 0.15 -1.3 1,694,678 + Psyr_1508 0.58 +0.5 1,694,750 + Psyr_1508 0.66 +1.8 1,694,750 + Psyr_1508 0.66 -1.4 1,694,750 + Psyr_1508 0.66 +1.6 1,694,750 + Psyr_1508 0.66 +0.8 1,694,750 + Psyr_1508 0.66 -0.4 1,694,750 + Psyr_1508 0.66 -1.7 1,694,750 + Psyr_1508 0.66 +1.1 1,694,750 + Psyr_1508 0.66 -0.0 1,694,751 - Psyr_1508 0.66 -0.7 1,694,751 - Psyr_1508 0.66 +0.5 1,694,751 - Psyr_1508 0.66 -1.1 1,694,754 + Psyr_1508 0.66 -0.7 1,694,754 + Psyr_1508 0.66 +0.6 1,694,754 + Psyr_1508 0.66 +0.8 1,694,754 + Psyr_1508 0.66 +0.3 1,694,754 + Psyr_1508 0.66 -1.1 1,694,754 + Psyr_1508 0.66 -0.1 1,694,754 + Psyr_1508 0.66 -0.4 1,694,754 + Psyr_1508 0.66 -1.0 1,694,755 - Psyr_1508 0.66 -0.4 1,694,755 - Psyr_1508 0.66 -0.6 1,694,755 - Psyr_1508 0.66 +0.2 1,694,755 - Psyr_1508 0.66 -0.9 1,694,755 - Psyr_1508 0.66 +0.1 1,694,755 - Psyr_1508 0.66 -0.8 1,694,755 - Psyr_1508 0.66 -1.4 1,694,755 - Psyr_1508 0.66 -0.0 1,694,760 + Psyr_1508 0.67 +2.2 1,694,760 + Psyr_1508 0.67 -1.5 1,694,760 + Psyr_1508 0.67 +0.5 1,694,760 + Psyr_1508 0.67 -0.1 1,694,760 + Psyr_1508 0.67 -0.9 1,694,760 + Psyr_1508 0.67 -0.7 1,694,760 + Psyr_1508 0.67 -0.5 1,694,760 + Psyr_1508 0.67 +0.6 1,694,760 + Psyr_1508 0.67 -1.4 1,694,760 + Psyr_1508 0.67 -0.2 1,694,760 + Psyr_1508 0.67 -0.4 1,694,760 + Psyr_1508 0.67 +2.3 1,694,760 + Psyr_1508 0.67 -1.1 1,694,760 + Psyr_1508 0.67 +0.3 1,694,760 + Psyr_1508 0.67 -0.4 1,694,761 - Psyr_1508 0.67 -1.7 1,694,761 - Psyr_1508 0.67 +4.0 1,694,761 - Psyr_1508 0.67 -0.4 1,694,761 - Psyr_1508 0.67 +0.1 1,694,761 - Psyr_1508 0.67 +1.1 1,694,761 - Psyr_1508 0.67 -0.5 1,694,761 - Psyr_1508 0.67 +0.6 1,694,761 - Psyr_1508 0.67 -0.5 1,694,761 - Psyr_1508 0.67 -0.2 1,694,761 - Psyr_1508 0.67 -0.9 1,694,761 - Psyr_1508 0.67 +0.4 1,694,761 - Psyr_1508 0.67 +0.4 1,694,761 - Psyr_1508 0.67 +0.2 1,694,761 - Psyr_1508 0.67 -0.1 1,694,761 - Psyr_1508 0.67 +0.6 1,694,761 - Psyr_1508 0.67 +0.1 1,694,761 - Psyr_1508 0.67 +0.9 1,694,762 + Psyr_1508 0.67 -0.5 1,694,762 + Psyr_1508 0.67 -0.5 1,694,762 + Psyr_1508 0.67 -0.5 1,694,763 - Psyr_1508 0.67 +0.6 1,694,763 - Psyr_1508 0.67 -0.5 1,694,807 + Psyr_1508 0.71 +0.2 1,694,808 - Psyr_1508 0.72 -2.1 1,694,859 + Psyr_1508 0.77 +1.7 1,694,859 + Psyr_1508 0.77 +1.2 1,694,860 - Psyr_1508 0.77 -2.2 1,694,860 - Psyr_1508 0.77 +0.1 1,694,860 - Psyr_1508 0.77 -1.6 1,694,860 - Psyr_1508 0.77 -0.1 1,694,862 - Psyr_1508 0.77 -1.0 1,694,862 - Psyr_1508 0.77 -1.5 1,694,862 - Psyr_1508 0.77 +1.2 1,694,943 - Psyr_1508 0.86 +4.0
Or see this region's nucleotide sequence