Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1476

Experiment: KB with Ginkgolide A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Ginkgolide A 10 mM
1,664,499	+		Psyr_1475	0.73	+0.1
1,664,499	+		Psyr_1475	0.73	+0.1
1,664,499	+		Psyr_1475	0.73	+1.0
1,664,500	-		Psyr_1475	0.73	-1.6
1,664,500	-		Psyr_1475	0.73	-0.7
1,664,500	-		Psyr_1475	0.73	+0.2
1,664,536	+		Psyr_1475	0.77	-0.3
1,664,536	+		Psyr_1475	0.77	-0.8
1,664,536	+		Psyr_1475	0.77	+3.2
1,664,536	+		Psyr_1475	0.77	-0.2
1,664,536	+		Psyr_1475	0.77	+0.2
1,664,536	+		Psyr_1475	0.77	-0.2
1,664,536	+		Psyr_1475	0.77	-2.2
1,664,536	+		Psyr_1475	0.77	-0.4
1,664,536	+		Psyr_1475	0.77	+0.9
1,664,536	+		Psyr_1475	0.77	+1.5
1,664,536	+		Psyr_1475	0.77	+0.7
1,664,537	-		Psyr_1475	0.77	-3.2
1,664,537	-		Psyr_1475	0.77	+1.2
1,664,537	-		Psyr_1475	0.77	-0.3
1,664,537	-		Psyr_1475	0.77	-1.7
1,664,537	-		Psyr_1475	0.77	-0.5
1,664,537	-		Psyr_1475	0.77	-0.8
1,664,537	-		Psyr_1475	0.77	-1.7
1,664,537	-		Psyr_1475	0.77	-2.3
1,664,537	-		Psyr_1475	0.77	+3.5
1,664,537	-		Psyr_1475	0.77	+1.2
1,664,537	-		Psyr_1475	0.77	+0.4
1,664,537	-		Psyr_1475	0.77	-0.9
1,664,537	-		Psyr_1475	0.77	+1.6
1,664,554	+		Psyr_1475	0.79	-0.0
1,664,701	+				-0.5
1,664,701	+				+0.7
1,664,701	+				+0.8
1,664,702	-				-0.4
1,664,702	-				+0.7
1,664,740	+				-0.8
1,664,740	+				+1.1
1,664,740	+				-0.0
1,664,740	+				+0.5
1,664,740	+				+0.8
1,664,740	+				+0.5
1,664,741	-				-0.5
1,664,741	-				-0.4
1,664,741	-				+0.7
1,664,741	-				+1.0
1,664,741	-				-0.6
1,664,741	-				-0.5
1,664,742	+				-0.6
1,664,743	-				-0.3
1,664,743	-				+0.9
1,664,743	-				+0.2
1,664,743	-				-1.4
1,664,752	+				-3.6
1,664,752	+				-1.9
1,664,752	+				+0.2
1,664,752	+				+1.1
1,664,753	-				-0.1
1,664,755	+				-2.1
1,664,755	+				+0.6
1,664,755	+				+0.9
1,664,755	+				-2.1
1,664,775	+				-0.4
1,664,775	+				-1.0
1,664,873	+				-0.4
1,664,873	+				-0.4
1,664,873	+				+1.6
1,664,873	+				-0.4
1,664,873	+				-0.6
1,664,873	+				+0.2
1,664,873	+				+1.8
1,664,874	-				+0.6
1,664,874	-				+0.7
1,664,874	-				-0.9
1,664,874	-				+0.6
1,664,874	-				-1.5
1,664,874	-				+0.2
1,664,874	-				+0.1
1,664,874	-				+0.6
1,664,874	-				+1.2
1,664,874	-				-0.6
1,664,874	-				-1.4
1,664,874	-				+0.2
1,664,874	-				-0.0
1,664,927	+				-0.8
1,664,927	+				+0.0
1,664,927	+				+0.6
1,664,928	-				-2.1
1,664,928	-				-1.5
1,664,928	-				-0.1
1,664,928	-				-1.8
1,664,928	-				-1.7
1,665,011	+				+0.3
1,665,011	+				+0.4
1,665,011	+				-1.1
1,665,012	-				-1.8
1,665,020	+				-1.0
1,665,020	+				-0.3
1,665,020	+				-1.5
1,665,020	+				-2.2
1,665,020	+				-1.4
1,665,021	-				+1.1
1,665,021	-				-0.8
1,665,021	-				+0.8
1,665,021	-				-1.1
1,665,021	-				+0.3
1,665,021	-				-0.2
1,665,070	+				+0.9
1,665,087	+				-2.0
1,665,087	+				+0.4
1,665,087	+				+0.2
1,665,087	+				-0.8
1,665,087	+				+0.3
1,665,088	-				-0.3
1,665,088	-				-0.9
1,665,088	-				+0.4
1,665,132	+				-2.5
1,665,154	+				-0.6
1,665,174	+				+0.2
1,665,174	+				-0.6
1,665,175	-				-0.8
1,665,175	-				-0.4
1,665,175	-				+2.3
1,665,175	-				-0.1
1,665,175	-				-2.1
1,665,175	-				+0.6
1,665,178	+				+0.0
1,665,178	+				+0.3
1,665,178	+				+0.5
1,665,178	+				+1.8
1,665,178	+				+0.5
1,665,178	+				-1.6
1,665,178	+				-0.0
1,665,179	-				-0.0
1,665,179	-				+0.3
1,665,179	-				+1.0
1,665,196	+				-0.2
1,665,196	+				-0.6
1,665,197	-				+1.7
1,665,197	-				-1.1
1,665,197	-				-0.8
1,665,197	-				-1.5
1,665,305	+				-0.2
1,665,305	+				+1.7
1,665,305	+				+2.2
1,665,305	+				+0.4
1,665,305	+				+1.2
1,665,306	-				-0.1
1,665,318	+				+0.2
1,665,319	-				-1.1
1,665,365	+				+0.5
1,665,365	+				+1.1
1,665,383	+				-1.7
1,665,383	+				+1.1
1,665,383	+				+0.4
1,665,383	+				-0.5
1,665,383	+				+0.4
1,665,384	-				-2.0
1,665,384	-				+0.1
1,665,384	-				-1.4
1,665,384	-				-0.3
1,665,384	-				+0.8
1,665,384	-				-0.9
1,665,408	+				-1.3
1,665,408	+				+1.0
1,665,409	-				-1.6
1,665,409	-				+0.4
1,665,409	-				-0.4
1,665,456	+				+0.1
1,665,456	+				-1.0
1,665,456	+				-1.4
1,665,457	-				-2.7
1,665,459	+				-1.4
1,665,459	+				+1.6
1,665,460	-				+0.1
1,665,460	-				+0.9
1,665,460	-				-0.5
1,665,460	-				+2.6
1,665,463	+				-1.6
1,665,464	-				-1.4
1,665,464	-				-0.2
1,665,464	-				+1.9
1,665,464	-				+0.9
1,665,519	+		Psyr_1476	0.12	-0.0
1,665,534	+		Psyr_1476	0.16	-1.2
1,665,535	-		Psyr_1476	0.17	+0.8
1,665,535	-		Psyr_1476	0.17	+3.0
1,665,552	-		Psyr_1476	0.21	+0.2
1,665,552	-		Psyr_1476	0.21	+1.2
1,665,569	+		Psyr_1476	0.25	-0.2
1,665,569	+		Psyr_1476	0.25	-0.7
1,665,569	+		Psyr_1476	0.25	-1.1
1,665,569	+		Psyr_1476	0.25	-1.2
1,665,569	+		Psyr_1476	0.25	-0.4
1,665,570	-		Psyr_1476	0.26	-3.2
1,665,570	-		Psyr_1476	0.26	+0.0
1,665,570	-		Psyr_1476	0.26	-0.9
1,665,570	-		Psyr_1476	0.26	-0.8
1,665,570	-		Psyr_1476	0.26	+0.6
1,665,611	+		Psyr_1476	0.36	+3.5
1,665,612	-		Psyr_1476	0.37	+2.5
1,665,612	-		Psyr_1476	0.37	+0.8
1,665,612	-		Psyr_1476	0.37	-1.0
1,665,612	-		Psyr_1476	0.37	-0.7
1,665,612	-		Psyr_1476	0.37	-0.8
1,665,612	-		Psyr_1476	0.37	-0.2
1,665,714	+		Psyr_1476	0.64	-0.4
1,665,714	+		Psyr_1476	0.64	+3.8
1,665,715	-		Psyr_1476	0.64	-0.5
1,665,715	-		Psyr_1476	0.64	+0.6
1,665,715	-		Psyr_1476	0.64	+1.7
1,665,715	-		Psyr_1476	0.64	-0.0
1,665,715	-		Psyr_1476	0.64	-0.8
1,665,715	-		Psyr_1476	0.64	+0.0
1,665,716	+		Psyr_1476	0.64	-0.4
1,665,716	+		Psyr_1476	0.64	+1.9
1,665,717	-		Psyr_1476	0.64	+1.2
1,665,717	-		Psyr_1476	0.64	+0.3
1,665,717	-		Psyr_1476	0.64	-3.3
1,665,727	-		Psyr_1476	0.67	+0.5
1,665,745	+		Psyr_1476	0.72	+0.8
1,665,746	-		Psyr_1476	0.72	+2.0
1,665,852	+				+0.3
1,665,852	+				+0.3
1,665,852	+				+3.2
1,665,852	+				+0.9
1,665,852	+				-1.4
1,665,852	+				-3.0
1,665,852	+				-1.1
1,665,852	+				+0.4
1,665,852	+				-0.8
1,665,852	+				-0.2
1,665,852	+				+1.5
1,665,852	+				-1.8
1,665,853	-				+1.4
1,665,853	-				+0.3
1,665,853	-				+1.1
1,665,853	-				-1.1
1,665,853	-				+1.2
1,665,853	-				+1.2
1,665,853	-				+0.6
1,665,853	-				+0.1
1,665,853	-				-2.5
1,665,853	-				-0.9
1,665,853	-				-0.2
1,665,853	-				-0.3
1,665,853	-				-0.8
1,665,853	-				+0.3
1,665,853	-				+0.3
1,665,853	-				+0.9
1,665,856	+				+0.9
1,665,856	+				-0.4
1,665,856	+				-3.4
1,665,856	+				-1.2
1,665,856	+				-0.0
1,665,857	-				+1.1
1,665,857	-				+1.6
1,665,857	-				+1.1
1,665,857	-				+0.2
1,665,857	-				+1.2
1,665,857	-				+1.2
1,665,857	-				+0.4
1,665,857	-				-1.4
1,665,882	+				-0.6
1,665,924	+				+1.2
1,665,924	+				+0.4
1,665,925	-				-0.3
1,665,925	-				-0.6
1,665,925	-				+0.0
1,665,925	-				-0.4
1,665,925	-				-1.7
1,665,925	-				+1.8
1,665,944	+				-0.4
1,665,945	-				+1.4
1,665,945	-				-0.1
1,665,958	-				+0.1
1,666,124	+				-0.7
1,666,127	+				-0.2
1,666,128	-				+2.1
1,666,238	+				-0.4
1,666,239	-				-0.7
1,666,239	-				-2.1
1,666,239	-				-0.2
1,666,239	-				+0.2
1,666,261	+				-1.2
1,666,261	+				-0.4
1,666,261	+				+0.3
1,666,261	+				-0.6
1,666,261	+				+0.7
1,666,261	+				+0.1
1,666,261	+				+1.4
1,666,261	+				+0.9
1,666,261	+				-4.3
1,666,261	+				+3.2
1,666,262	-				-1.4
1,666,262	-				-0.7
1,666,262	-				-1.2
1,666,262	-				+4.2
1,666,262	-				+0.8
1,666,262	-				-0.7
1,666,262	-				+0.3
1,666,390	+		Psyr_1477	0.21	-2.0
1,666,390	+		Psyr_1477	0.21	+0.4
1,666,516	+		Psyr_1477	0.34	+0.6
1,666,516	+		Psyr_1477	0.34	+2.8
1,666,589	+		Psyr_1477	0.41	+0.5
1,666,590	-		Psyr_1477	0.41	+0.4
1,666,613	+		Psyr_1477	0.43	+0.7
1,666,614	-		Psyr_1477	0.44	+3.4
1,666,642	+		Psyr_1477	0.46	-1.0
1,666,643	-		Psyr_1477	0.46	-0.3
1,666,643	-		Psyr_1477	0.46	+0.1
1,666,666	-		Psyr_1477	0.49	-3.9
1,666,701	+		Psyr_1477	0.52	+0.2
1,666,711	-		Psyr_1477	0.53	-2.0
1,666,711	-		Psyr_1477	0.53	-0.5
1,666,771	+		Psyr_1477	0.59	+0.8
1,666,830	-		Psyr_1477	0.65	+0.7
1,666,845	+		Psyr_1477	0.67	+0.2