Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1378

Experiment: KB with Ginkgolide A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Ginkgolide A 10 mM
1,561,500	+				-0.5
1,561,521	+				+1.5
1,561,547	+				+0.7
1,561,614	+				+0.8
1,561,614	+				+2.7
1,561,614	+				-0.4
1,561,615	-				-0.9
1,561,615	-				+0.6
1,561,654	+				+1.1
1,561,657	-				+1.2
1,561,670	+				+0.6
1,561,670	+				-0.4
1,561,671	-				-1.1
1,561,671	-				+0.0
1,561,672	+				+1.2
1,561,799	+				-0.4
1,561,799	+				-0.3
1,561,799	+				-0.4
1,561,799	+				+0.5
1,561,799	+				-0.8
1,561,799	+				+2.4
1,561,799	+				-0.6
1,561,800	-				-1.1
1,561,800	-				-0.9
1,561,800	-				+0.2
1,561,800	-				-0.2
1,561,800	-				-0.3
1,561,800	-				+2.0
1,561,800	-				-1.0
1,561,800	-				-0.6
1,561,800	-				+1.2
1,561,800	-				+0.6
1,561,857	-				-3.1
1,561,881	-		Psyr_1377	0.13	+0.1
1,561,881	-		Psyr_1377	0.13	+1.2
1,561,881	-		Psyr_1377	0.13	-0.5
1,562,036	+		Psyr_1377	0.39	+1.2
1,562,037	-		Psyr_1377	0.40	-1.9
1,562,073	+		Psyr_1377	0.46	+0.3
1,562,074	-		Psyr_1377	0.46	+3.4
1,562,088	+		Psyr_1377	0.48	+1.3
1,562,089	-		Psyr_1377	0.49	+2.1
1,562,089	-		Psyr_1377	0.49	+2.3
1,562,349	+				+0.4
1,562,350	-				-1.0
1,562,412	+				-1.1
1,562,452	-				+0.1
1,562,465	+				+0.7
1,562,465	+				-0.3
1,562,465	+				+0.2
1,562,466	-				-1.4
1,562,466	-				-2.0
1,563,128	+		Psyr_1378	0.61	+0.2
1,563,129	-		Psyr_1378	0.61	-1.4
1,563,281	+		Psyr_1378	0.75	-1.0
1,563,281	+		Psyr_1378	0.75	-2.3
1,563,282	-		Psyr_1378	0.75	-2.0
1,563,282	-		Psyr_1378	0.75	+0.1
1,563,353	+		Psyr_1378	0.82	-0.6
1,563,517	+				-1.1
1,563,517	+				-0.0
1,563,517	+				-1.7
1,563,518	-				-1.3
1,563,518	-				+1.5
1,563,518	-				+1.2
1,563,518	-				-2.0
1,563,518	-				-0.7
1,563,518	-				-1.6
1,563,643	-		Psyr_1379	0.20	-1.3
1,563,784	-		Psyr_1379	0.50	-0.1
1,563,874	+		Psyr_1379	0.69	-1.0
1,563,956	-		Psyr_1379	0.87	-0.1
1,564,018	+				+0.5
1,564,018	+				+1.6
1,564,018	+				+0.1
1,564,018	+				-0.7
1,564,018	+				-2.3
1,564,018	+				+0.5
1,564,018	+				-0.9
1,564,018	+				-1.3
1,564,019	-				-0.0
1,564,019	-				+0.9
1,564,019	-				-0.3
1,564,019	-				+1.4
1,564,019	-				-0.2
1,564,019	-				-0.8
1,564,021	-				-0.1
1,564,032	+				+0.3
1,564,032	+				+0.6
1,564,104	+				-1.4
1,564,104	+				-0.1
1,564,104	+				-0.2
1,564,104	+				-0.7
1,564,104	+				+0.8
1,564,105	-				-0.3
1,564,105	-				-0.8
1,564,105	-				+0.0
1,564,105	-				-0.4
1,564,105	-				+0.2
1,564,105	-				-0.3
1,564,105	-				+0.1
1,564,105	-				+1.5
1,564,207	-		Psyr_1380	0.16	-0.8
1,564,298	-		Psyr_1380	0.24	+0.3
1,564,347	+		Psyr_1380	0.28	+0.4
1,564,348	-				+0.2
1,564,425	+		Psyr_1380	0.35	-1.1
1,564,425	+		Psyr_1380	0.35	-1.8
1,564,425	+		Psyr_1380	0.35	-0.4
1,564,426	-		Psyr_1380	0.35	+1.1
1,564,426	-		Psyr_1380	0.35	-3.0
1,564,426	-		Psyr_1380	0.35	+0.9
1,564,426	-		Psyr_1380	0.35	-0.1
1,564,502	+		Psyr_1380	0.42	+1.8
1,564,503	-		Psyr_1380	0.42	-3.6
1,564,535	+		Psyr_1380	0.45	-1.3
1,564,535	+		Psyr_1380	0.45	+2.0
1,564,536	-		Psyr_1380	0.45	+0.2
1,564,536	-		Psyr_1380	0.45	-1.6