Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1318

Experiment: KB with Ginkgolide A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Ginkgolide A 10 mM
1,494,293	+				-0.9
1,494,300	-				+0.5
1,494,302	+				-0.8
1,494,302	+				+1.4
1,494,315	+				-0.1
1,494,316	-				+2.5
1,494,349	+				+0.1
1,494,350	-				+0.9
1,494,350	-				-0.2
1,494,350	-				+0.2
1,494,510	+		Psyr_1317	0.38	-0.0
1,494,510	+		Psyr_1317	0.38	+0.2
1,494,511	-		Psyr_1317	0.38	-0.4
1,494,511	-		Psyr_1317	0.38	+0.1
1,494,747	-				+0.2
1,494,747	-				-0.6
1,494,833	+				-0.4
1,494,834	-				+0.7
1,494,834	-				+2.8
1,494,865	+				+0.2
1,494,901	+				+1.0
1,494,902	-				-0.8
1,494,911	-				+0.0
1,494,914	+				+0.3
1,494,914	+				+0.8
1,494,915	-				-0.3
1,494,915	-				-0.8
1,494,915	-				-0.4
1,494,915	-				-1.2
1,494,915	-				+1.2
1,494,918	+				+0.1
1,494,918	+				-1.2
1,494,919	-				-0.9
1,494,963	+				-0.9
1,494,977	+				+1.4
1,494,977	+				+0.8
1,494,977	+				-0.4
1,495,093	+				+0.4
1,495,093	+				+0.6
1,495,094	-				+1.2
1,495,094	-				-0.6
1,495,094	-				+1.9
1,495,133	+				+0.2
1,495,216	-				+0.1
1,495,263	+				-1.5
1,495,264	-				-0.4
1,495,264	-				-0.9
1,495,414	+				+0.4
1,495,440	+		Psyr_1318	0.11	-2.3
1,495,469	+		Psyr_1318	0.12	+0.3
1,495,609	+		Psyr_1318	0.17	-0.0
1,495,609	+		Psyr_1318	0.17	+0.7
1,495,610	-		Psyr_1318	0.17	+1.9
1,495,610	-		Psyr_1318	0.17	-1.0
1,495,659	+		Psyr_1318	0.19	+0.5
1,495,680	+		Psyr_1318	0.20	-0.7
1,495,680	+		Psyr_1318	0.20	+1.4
1,495,680	+		Psyr_1318	0.20	+0.5
1,495,681	-		Psyr_1318	0.20	+1.6
1,495,993	+		Psyr_1318	0.32	-0.7
1,495,993	+		Psyr_1318	0.32	+0.3
1,496,383	+		Psyr_1318	0.47	+2.1
1,496,479	+		Psyr_1318	0.50	+0.4
1,496,480	-		Psyr_1318	0.50	-0.9
1,496,480	-		Psyr_1318	0.50	+0.3
1,496,563	+		Psyr_1318	0.53	+0.3
1,496,563	+		Psyr_1318	0.53	+0.8
1,496,563	+		Psyr_1318	0.53	-0.5
1,496,563	+		Psyr_1318	0.53	+2.5
1,496,563	+		Psyr_1318	0.53	+1.7
1,496,563	+		Psyr_1318	0.53	+1.4
1,496,563	+		Psyr_1318	0.53	+0.9
1,496,563	+		Psyr_1318	0.53	-1.1
1,496,563	+		Psyr_1318	0.53	-0.0
1,496,563	+		Psyr_1318	0.53	-0.5
1,496,563	+		Psyr_1318	0.53	-0.6
1,496,563	+		Psyr_1318	0.53	-0.2
1,496,563	+		Psyr_1318	0.53	+0.0
1,496,564	-				+2.8
1,496,771	-		Psyr_1318	0.61	-0.4
1,497,049	+		Psyr_1318	0.72	+2.8
1,497,049	+		Psyr_1318	0.72	+2.9
1,497,191	-		Psyr_1318	0.77	+1.0
1,497,272	+		Psyr_1318	0.80	-0.6
1,497,273	-		Psyr_1318	0.80	+1.0
1,497,539	+				-0.3
1,497,548	+				+0.8
1,497,548	+				-1.0
1,497,549	-				-0.3
1,497,549	-				-1.8
1,497,549	-				+1.0
1,497,549	-				-0.1
1,497,549	-				+0.4
1,497,649	+				+0.6
1,497,649	+				-1.6
1,497,649	+				+0.1
1,497,649	+				+2.2
1,497,649	+				+1.2
1,497,649	+				-1.1
1,497,650	-				-0.1
1,497,650	-				+1.6
1,497,650	-				+0.1
1,497,650	-				-2.3
1,497,650	-				-1.5
1,497,650	-				+1.2
1,497,778	-				+0.7
1,497,878	+				-1.4
1,497,878	+				+2.8
1,497,878	+				-0.6
1,497,878	+				+1.2
1,497,879	-				-0.4
1,497,879	-				-2.8
1,497,879	-				-0.7
1,497,879	-				-0.9
1,497,879	-				-0.6
1,497,879	-				+1.0
1,497,879	-				-0.7
1,497,970	+				-0.2
1,497,970	+				+0.3
1,498,738	+				-0.2
1,498,738	+				+0.9
1,498,738	+				-2.1
1,498,738	+				+1.4
1,498,738	+				-2.6
1,498,769	+				+1.7
1,498,769	+				+0.2
1,498,769	+				-2.7
1,498,769	+				-1.3
1,498,769	+				-0.3
1,498,769	+				-1.4
1,498,769	+				-0.4
1,498,769	+				-0.4
1,498,769	+				-0.7
1,498,769	+				+1.2
1,498,769	+				+0.5
1,498,770	-				-1.3
1,498,770	-				+1.2
1,498,770	-				+1.2
1,498,770	-				-0.7
1,498,770	-				+0.6
1,498,770	-				+0.7
1,498,770	-				-1.0
1,498,770	-				+1.6
1,498,770	-				-0.6
1,498,770	-				-3.2
1,498,770	-				+1.0