Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1276 and Psyr_1277 are separated by 103 nucleotides Psyr_1277 and Psyr_1278 are separated by 77 nucleotides
Psyr_1276: Psyr_1276 - conserved hypothetical protein, at 1,441,772 to 1,442,239
_1276
Psyr_1277: Psyr_1277 - formate-dependent phosphoribosylglycinamide formyltransferase, at 1,442,343 to 1,443,524
_1277
Psyr_1278: Psyr_1278 - Citrate-proton symport, at 1,443,602 to 1,444,972
_1278
Position (kb)
1442
1443
1444 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1441.735 kb on + strand at 1441.790 kb on + strand at 1441.790 kb on + strand at 1441.790 kb on + strand at 1441.955 kb on + strand, within Psyr_1276 at 1441.955 kb on + strand, within Psyr_1276 at 1441.955 kb on + strand, within Psyr_1276 at 1441.955 kb on + strand, within Psyr_1276 at 1441.955 kb on + strand, within Psyr_1276 at 1441.955 kb on + strand, within Psyr_1276 at 1441.956 kb on - strand, within Psyr_1276 at 1441.956 kb on - strand, within Psyr_1276 at 1441.956 kb on - strand, within Psyr_1276 at 1441.956 kb on - strand, within Psyr_1276 at 1441.956 kb on - strand at 1441.956 kb on - strand, within Psyr_1276 at 1441.956 kb on - strand, within Psyr_1276 at 1441.956 kb on - strand, within Psyr_1276 at 1441.956 kb on - strand, within Psyr_1276 at 1441.956 kb on - strand, within Psyr_1276 at 1442.102 kb on - strand, within Psyr_1276 at 1442.108 kb on - strand, within Psyr_1276 at 1442.108 kb on - strand, within Psyr_1276 at 1442.108 kb on - strand, within Psyr_1276 at 1442.108 kb on - strand, within Psyr_1276 at 1442.108 kb on - strand, within Psyr_1276 at 1442.108 kb on - strand, within Psyr_1276 at 1442.302 kb on - strand at 1442.386 kb on + strand at 1442.387 kb on - strand at 1442.764 kb on - strand, within Psyr_1277 at 1443.030 kb on + strand, within Psyr_1277 at 1443.031 kb on - strand, within Psyr_1277 at 1443.514 kb on + strand at 1443.514 kb on + strand at 1443.515 kb on - strand at 1443.515 kb on - strand at 1443.515 kb on - strand at 1443.515 kb on - strand at 1443.515 kb on - strand at 1443.537 kb on - strand at 1443.537 kb on - strand at 1443.614 kb on - strand at 1443.675 kb on + strand at 1443.675 kb on + strand at 1443.675 kb on + strand at 1443.676 kb on - strand at 1443.765 kb on + strand, within Psyr_1278 at 1443.765 kb on + strand, within Psyr_1278 at 1443.766 kb on - strand, within Psyr_1278 at 1443.766 kb on - strand, within Psyr_1278 at 1443.766 kb on - strand, within Psyr_1278 at 1443.787 kb on - strand, within Psyr_1278 at 1443.922 kb on + strand, within Psyr_1278 at 1443.922 kb on + strand, within Psyr_1278 at 1443.923 kb on - strand, within Psyr_1278 at 1444.067 kb on - strand, within Psyr_1278 at 1444.115 kb on - strand, within Psyr_1278 at 1444.116 kb on + strand, within Psyr_1278 at 1444.116 kb on + strand, within Psyr_1278 at 1444.116 kb on + strand, within Psyr_1278 at 1444.116 kb on + strand, within Psyr_1278 at 1444.117 kb on - strand, within Psyr_1278 at 1444.117 kb on - strand, within Psyr_1278 at 1444.117 kb on - strand, within Psyr_1278 at 1444.117 kb on - strand, within Psyr_1278 at 1444.117 kb on - strand, within Psyr_1278 at 1444.117 kb on - strand, within Psyr_1278 at 1444.117 kb on - strand, within Psyr_1278 at 1444.117 kb on - strand, within Psyr_1278 at 1444.117 kb on - strand, within Psyr_1278 at 1444.129 kb on - strand, within Psyr_1278 at 1444.269 kb on + strand, within Psyr_1278 at 1444.269 kb on + strand, within Psyr_1278 at 1444.269 kb on + strand, within Psyr_1278 at 1444.269 kb on + strand, within Psyr_1278 at 1444.269 kb on + strand, within Psyr_1278 at 1444.270 kb on - strand, within Psyr_1278 at 1444.270 kb on - strand, within Psyr_1278 at 1444.270 kb on - strand, within Psyr_1278 at 1444.270 kb on - strand, within Psyr_1278
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 1,441,735 + -1.7 1,441,790 + -0.4 1,441,790 + +0.6 1,441,790 + -1.5 1,441,955 + Psyr_1276 0.39 +1.0 1,441,955 + Psyr_1276 0.39 -0.2 1,441,955 + Psyr_1276 0.39 +0.4 1,441,955 + Psyr_1276 0.39 -0.4 1,441,955 + Psyr_1276 0.39 -2.7 1,441,955 + Psyr_1276 0.39 -1.2 1,441,956 - Psyr_1276 0.39 -1.3 1,441,956 - Psyr_1276 0.39 +0.2 1,441,956 - Psyr_1276 0.39 -1.4 1,441,956 - Psyr_1276 0.39 -0.5 1,441,956 - -2.4 1,441,956 - Psyr_1276 0.39 +0.5 1,441,956 - Psyr_1276 0.39 +0.3 1,441,956 - Psyr_1276 0.39 -3.4 1,441,956 - Psyr_1276 0.39 +0.5 1,441,956 - Psyr_1276 0.39 -1.5 1,442,102 - Psyr_1276 0.71 -0.7 1,442,108 - Psyr_1276 0.72 +0.1 1,442,108 - Psyr_1276 0.72 -1.0 1,442,108 - Psyr_1276 0.72 -1.4 1,442,108 - Psyr_1276 0.72 -0.8 1,442,108 - Psyr_1276 0.72 -1.8 1,442,108 - Psyr_1276 0.72 +0.0 1,442,302 - -0.4 1,442,386 + -1.7 1,442,387 - +0.5 1,442,764 - Psyr_1277 0.36 -0.8 1,443,030 + Psyr_1277 0.58 -1.6 1,443,031 - Psyr_1277 0.58 -0.2 1,443,514 + -0.5 1,443,514 + +1.2 1,443,515 - -0.9 1,443,515 - +1.4 1,443,515 - +0.3 1,443,515 - -1.0 1,443,515 - +1.2 1,443,537 - +1.1 1,443,537 - -0.4 1,443,614 - -2.0 1,443,675 + +1.2 1,443,675 + -0.6 1,443,675 + +1.0 1,443,676 - +0.3 1,443,765 + Psyr_1278 0.12 +1.3 1,443,765 + Psyr_1278 0.12 +0.1 1,443,766 - Psyr_1278 0.12 -0.5 1,443,766 - Psyr_1278 0.12 +1.0 1,443,766 - Psyr_1278 0.12 -1.8 1,443,787 - Psyr_1278 0.13 +0.7 1,443,922 + Psyr_1278 0.23 +0.2 1,443,922 + Psyr_1278 0.23 -2.1 1,443,923 - Psyr_1278 0.23 +0.2 1,444,067 - Psyr_1278 0.34 -1.7 1,444,115 - Psyr_1278 0.37 +0.5 1,444,116 + Psyr_1278 0.37 -0.6 1,444,116 + Psyr_1278 0.37 -0.8 1,444,116 + Psyr_1278 0.37 -0.1 1,444,116 + Psyr_1278 0.37 +0.6 1,444,117 - Psyr_1278 0.38 -0.5 1,444,117 - Psyr_1278 0.38 +1.2 1,444,117 - Psyr_1278 0.38 -1.3 1,444,117 - Psyr_1278 0.38 +0.5 1,444,117 - Psyr_1278 0.38 +0.2 1,444,117 - Psyr_1278 0.38 +1.5 1,444,117 - Psyr_1278 0.38 -0.2 1,444,117 - Psyr_1278 0.38 -0.1 1,444,117 - Psyr_1278 0.38 -0.3 1,444,129 - Psyr_1278 0.38 +0.9 1,444,269 + Psyr_1278 0.49 +0.9 1,444,269 + Psyr_1278 0.49 -2.1 1,444,269 + Psyr_1278 0.49 +0.1 1,444,269 + Psyr_1278 0.49 +2.2 1,444,269 + Psyr_1278 0.49 -0.7 1,444,270 - Psyr_1278 0.49 -0.8 1,444,270 - Psyr_1278 0.49 -0.9 1,444,270 - Psyr_1278 0.49 -1.2 1,444,270 - Psyr_1278 0.49 -0.2
Or see this region's nucleotide sequence