Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1237

Experiment: KB with Ginkgolide A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1235 and Psyr_1236 are separated by 159 nucleotidesPsyr_1236 and Psyr_1237 are separated by 44 nucleotidesPsyr_1237 and Psyr_1238 are separated by 81 nucleotidesPsyr_1238 and Psyr_1239 are separated by 71 nucleotidesPsyr_1239 and Psyr_1240 overlap by 23 nucleotides Psyr_1235: Psyr_1235 - serine O-acetyltransferase, at 1,393,300 to 1,394,076 _1235 Psyr_1236: Psyr_1236 - transcriptional regulator, BadM/Rrf2 family, at 1,394,236 to 1,394,727 _1236 Psyr_1237: Psyr_1237 - cysteine desulfurase IscS, at 1,394,772 to 1,395,986 _1237 Psyr_1238: Psyr_1238 - FeS cluster assembly scaffold IscU, at 1,396,068 to 1,396,454 _1238 Psyr_1239: Psyr_1239 - HesB/YadR/YfhF:Iron-sulfur cluster assembly protein IscA, at 1,396,526 to 1,396,849 _1239 Psyr_1240: Psyr_1240 - Co-chaperone Hsc20, at 1,396,827 to 1,397,381 _1240 Position (kb) 1394 1395 1396Strain fitness (log2 ratio) -2 -1 0 1at 1393.887 kb on + strand, within Psyr_1235at 1394.105 kb on + strandat 1394.105 kb on + strandat 1394.106 kb on - strandat 1394.121 kb on + strandat 1394.122 kb on - strandat 1394.200 kb on + strandat 1394.200 kb on + strandat 1394.200 kb on + strandat 1394.247 kb on + strandat 1394.247 kb on + strandat 1394.343 kb on + strand, within Psyr_1236at 1394.343 kb on + strand, within Psyr_1236at 1394.356 kb on + strand, within Psyr_1236at 1394.639 kb on + strand, within Psyr_1236at 1394.700 kb on + strandat 1395.984 kb on + strandat 1395.989 kb on + strandat 1396.004 kb on + strandat 1396.004 kb on + strandat 1396.856 kb on + strandat 1396.856 kb on + strandat 1396.856 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM
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1,393,887 + Psyr_1235 0.76 +0.5
1,394,105 + -1.2
1,394,105 + +0.1
1,394,106 - -0.5
1,394,121 + +0.3
1,394,122 - +1.0
1,394,200 + +1.3
1,394,200 + -0.8
1,394,200 + +0.4
1,394,247 + +0.0
1,394,247 + +0.3
1,394,343 + Psyr_1236 0.22 -0.8
1,394,343 + Psyr_1236 0.22 -0.4
1,394,356 + Psyr_1236 0.24 -2.4
1,394,639 + Psyr_1236 0.82 -0.8
1,394,700 + +0.3
1,395,984 + -2.5
1,395,989 + +1.4
1,396,004 + -0.2
1,396,004 + +0.2
1,396,856 + -0.4
1,396,856 + -0.1
1,396,856 + +1.2

Or see this region's nucleotide sequence