Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1167

Experiment: KB with Ginkgolide A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1166 and Psyr_1167 are separated by 27 nucleotidesPsyr_1167 and Psyr_1168 overlap by 8 nucleotides Psyr_1166: Psyr_1166 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase, at 1,319,643 to 1,320,659 _1166 Psyr_1167: Psyr_1167 - nucleoside ABC transporter membrane protein, at 1,320,687 to 1,321,607 _1167 Psyr_1168: Psyr_1168 - nucleoside ABC transporter membrane protein, at 1,321,600 to 1,322,709 _1168 Position (kb) 1320 1321 1322Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.782 kb on + strand, within Psyr_1166at 1319.782 kb on + strand, within Psyr_1166at 1319.782 kb on + strand, within Psyr_1166at 1319.783 kb on - strand, within Psyr_1166at 1319.783 kb on - strand, within Psyr_1166at 1319.783 kb on - strand, within Psyr_1166at 1319.839 kb on + strandat 1319.839 kb on + strand, within Psyr_1166at 1319.840 kb on - strand, within Psyr_1166at 1319.840 kb on - strand, within Psyr_1166at 1319.840 kb on - strand, within Psyr_1166at 1319.840 kb on - strand, within Psyr_1166at 1320.094 kb on + strand, within Psyr_1166at 1320.130 kb on + strand, within Psyr_1166at 1320.130 kb on + strand, within Psyr_1166at 1320.280 kb on + strand, within Psyr_1166at 1320.280 kb on + strand, within Psyr_1166at 1320.281 kb on - strand, within Psyr_1166at 1320.281 kb on - strand, within Psyr_1166at 1320.281 kb on - strand, within Psyr_1166at 1320.487 kb on - strand, within Psyr_1166at 1320.487 kb on - strand, within Psyr_1166at 1320.487 kb on - strand, within Psyr_1166at 1320.576 kb on - strandat 1320.751 kb on + strandat 1320.751 kb on + strandat 1320.751 kb on + strandat 1320.751 kb on + strandat 1320.751 kb on + strandat 1320.751 kb on + strandat 1320.752 kb on - strandat 1320.752 kb on - strandat 1320.752 kb on - strandat 1320.775 kb on + strandat 1320.775 kb on + strandat 1320.796 kb on + strand, within Psyr_1167at 1320.796 kb on + strand, within Psyr_1167at 1320.796 kb on + strand, within Psyr_1167at 1320.796 kb on + strand, within Psyr_1167at 1320.796 kb on + strand, within Psyr_1167at 1320.796 kb on + strand, within Psyr_1167at 1320.796 kb on + strand, within Psyr_1167at 1320.797 kb on - strand, within Psyr_1167at 1320.797 kb on - strand, within Psyr_1167at 1320.797 kb on - strand, within Psyr_1167at 1320.797 kb on - strand, within Psyr_1167at 1320.982 kb on + strand, within Psyr_1167at 1320.982 kb on + strand, within Psyr_1167at 1320.982 kb on + strand, within Psyr_1167at 1321.035 kb on + strand, within Psyr_1167at 1321.586 kb on + strandat 1321.587 kb on - strandat 1321.587 kb on - strandat 1321.587 kb on - strandat 1321.587 kb on - strandat 1321.598 kb on + strandat 1322.072 kb on + strand, within Psyr_1168at 1322.072 kb on + strand, within Psyr_1168at 1322.072 kb on + strand, within Psyr_1168at 1322.072 kb on + strand, within Psyr_1168at 1322.072 kb on + strand, within Psyr_1168at 1322.072 kb on + strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.148 kb on + strand, within Psyr_1168at 1322.148 kb on + strand, within Psyr_1168at 1322.148 kb on + strand, within Psyr_1168at 1322.148 kb on + strand, within Psyr_1168at 1322.148 kb on + strand, within Psyr_1168at 1322.148 kb on + strand, within Psyr_1168at 1322.149 kb on - strand, within Psyr_1168at 1322.149 kb on - strand, within Psyr_1168at 1322.149 kb on - strand, within Psyr_1168at 1322.149 kb on - strand, within Psyr_1168at 1322.149 kb on - strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.247 kb on - strand, within Psyr_1168at 1322.247 kb on - strand, within Psyr_1168at 1322.247 kb on - strand, within Psyr_1168at 1322.247 kb on - strand, within Psyr_1168at 1322.247 kb on - strand, within Psyr_1168

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM
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1,319,776 + Psyr_1166 0.13 -0.1
1,319,776 + Psyr_1166 0.13 +0.4
1,319,776 + Psyr_1166 0.13 -3.4
1,319,776 + Psyr_1166 0.13 -1.6
1,319,776 + Psyr_1166 0.13 +1.0
1,319,776 + Psyr_1166 0.13 -0.7
1,319,776 + Psyr_1166 0.13 -0.6
1,319,776 + Psyr_1166 0.13 +0.6
1,319,776 + Psyr_1166 0.13 +1.2
1,319,776 + Psyr_1166 0.13 +1.2
1,319,776 + Psyr_1166 0.13 -0.4
1,319,777 - Psyr_1166 0.13 +1.9
1,319,777 - Psyr_1166 0.13 +0.3
1,319,777 - Psyr_1166 0.13 +0.0
1,319,777 - Psyr_1166 0.13 -0.8
1,319,777 - Psyr_1166 0.13 +1.3
1,319,777 - Psyr_1166 0.13 -0.4
1,319,777 - Psyr_1166 0.13 -0.6
1,319,777 - Psyr_1166 0.13 +0.6
1,319,777 - Psyr_1166 0.13 -0.3
1,319,782 + Psyr_1166 0.14 +0.2
1,319,782 + Psyr_1166 0.14 +3.1
1,319,782 + Psyr_1166 0.14 +1.2
1,319,783 - Psyr_1166 0.14 -1.1
1,319,783 - Psyr_1166 0.14 +0.9
1,319,783 - Psyr_1166 0.14 +0.3
1,319,839 + +1.2
1,319,839 + Psyr_1166 0.19 -1.0
1,319,840 - Psyr_1166 0.19 +0.5
1,319,840 - Psyr_1166 0.19 +0.0
1,319,840 - Psyr_1166 0.19 +0.0
1,319,840 - Psyr_1166 0.19 -1.3
1,320,094 + Psyr_1166 0.44 +1.7
1,320,130 + Psyr_1166 0.48 +1.2
1,320,130 + Psyr_1166 0.48 +1.2
1,320,280 + Psyr_1166 0.63 -0.2
1,320,280 + Psyr_1166 0.63 +0.4
1,320,281 - Psyr_1166 0.63 -1.4
1,320,281 - Psyr_1166 0.63 -1.5
1,320,281 - Psyr_1166 0.63 +0.9
1,320,487 - Psyr_1166 0.83 -0.7
1,320,487 - Psyr_1166 0.83 +0.0
1,320,487 - Psyr_1166 0.83 -0.9
1,320,576 - +1.2
1,320,751 + +1.2
1,320,751 + +1.4
1,320,751 + +0.7
1,320,751 + +2.2
1,320,751 + +2.2
1,320,751 + +0.6
1,320,752 - -1.7
1,320,752 - +0.8
1,320,752 - -0.1
1,320,775 + -1.4
1,320,775 + +3.3
1,320,796 + Psyr_1167 0.12 -0.3
1,320,796 + Psyr_1167 0.12 -0.1
1,320,796 + Psyr_1167 0.12 -0.2
1,320,796 + Psyr_1167 0.12 -1.6
1,320,796 + Psyr_1167 0.12 -0.7
1,320,796 + Psyr_1167 0.12 -1.4
1,320,796 + Psyr_1167 0.12 -0.4
1,320,797 - Psyr_1167 0.12 -0.9
1,320,797 - Psyr_1167 0.12 -0.6
1,320,797 - Psyr_1167 0.12 -1.0
1,320,797 - Psyr_1167 0.12 -0.6
1,320,982 + Psyr_1167 0.32 -0.9
1,320,982 + Psyr_1167 0.32 -0.7
1,320,982 + Psyr_1167 0.32 -1.3
1,321,035 + Psyr_1167 0.38 +0.6
1,321,586 + +0.3
1,321,587 - -0.7
1,321,587 - -1.6
1,321,587 - -0.6
1,321,587 - +0.0
1,321,598 + +0.4
1,322,072 + Psyr_1168 0.43 -0.8
1,322,072 + Psyr_1168 0.43 +0.6
1,322,072 + Psyr_1168 0.43 -1.3
1,322,072 + Psyr_1168 0.43 +1.2
1,322,072 + Psyr_1168 0.43 -0.8
1,322,072 + Psyr_1168 0.43 -1.1
1,322,073 - Psyr_1168 0.43 -0.4
1,322,073 - Psyr_1168 0.43 -0.8
1,322,073 - Psyr_1168 0.43 -0.4
1,322,073 - Psyr_1168 0.43 -0.4
1,322,073 - Psyr_1168 0.43 +0.4
1,322,073 - Psyr_1168 0.43 +1.2
1,322,073 - Psyr_1168 0.43 -0.1
1,322,073 - Psyr_1168 0.43 +1.1
1,322,073 - Psyr_1168 0.43 +1.0
1,322,148 + Psyr_1168 0.49 +0.9
1,322,148 + Psyr_1168 0.49 -0.6
1,322,148 + Psyr_1168 0.49 -1.2
1,322,148 + Psyr_1168 0.49 +0.5
1,322,148 + Psyr_1168 0.49 -0.4
1,322,148 + Psyr_1168 0.49 +0.8
1,322,149 - Psyr_1168 0.49 +1.5
1,322,149 - Psyr_1168 0.49 +3.0
1,322,149 - Psyr_1168 0.49 +0.2
1,322,149 - Psyr_1168 0.49 -0.2
1,322,149 - Psyr_1168 0.49 -2.4
1,322,150 + Psyr_1168 0.50 -0.9
1,322,150 + Psyr_1168 0.50 -0.3
1,322,150 + Psyr_1168 0.50 -1.4
1,322,150 + Psyr_1168 0.50 -2.5
1,322,150 + Psyr_1168 0.50 +0.2
1,322,150 + Psyr_1168 0.50 -1.8
1,322,150 + Psyr_1168 0.50 +0.0
1,322,150 + Psyr_1168 0.50 -0.8
1,322,150 + Psyr_1168 0.50 -2.6
1,322,150 + Psyr_1168 0.50 -0.4
1,322,150 + Psyr_1168 0.50 +1.0
1,322,150 + Psyr_1168 0.50 +1.2
1,322,150 + Psyr_1168 0.50 +0.7
1,322,150 + Psyr_1168 0.50 -0.2
1,322,150 + Psyr_1168 0.50 -0.6
1,322,150 + Psyr_1168 0.50 -0.8
1,322,151 - Psyr_1168 0.50 -0.7
1,322,151 - Psyr_1168 0.50 +1.1
1,322,151 - Psyr_1168 0.50 +0.7
1,322,151 - Psyr_1168 0.50 -0.1
1,322,151 - Psyr_1168 0.50 -0.6
1,322,151 - Psyr_1168 0.50 +0.6
1,322,151 - Psyr_1168 0.50 -0.2
1,322,151 - Psyr_1168 0.50 -0.9
1,322,151 - Psyr_1168 0.50 +1.0
1,322,151 - Psyr_1168 0.50 +1.2
1,322,151 - Psyr_1168 0.50 -2.3
1,322,151 - Psyr_1168 0.50 -0.4
1,322,247 - Psyr_1168 0.58 -1.7
1,322,247 - Psyr_1168 0.58 -1.2
1,322,247 - Psyr_1168 0.58 -0.4
1,322,247 - Psyr_1168 0.58 +1.7
1,322,247 - Psyr_1168 0.58 +1.8

Or see this region's nucleotide sequence