Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1154

Experiment: KB with Ginkgolide A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1153 and Psyr_1154 are separated by 243 nucleotidesPsyr_1154 and Psyr_1155 are separated by 113 nucleotidesPsyr_1155 and Psyr_1156 are separated by 358 nucleotides Psyr_1153: Psyr_1153 - Zinc-containing alcohol dehydrogenase superfamily, at 1,304,459 to 1,305,469 _1153 Psyr_1154: Psyr_1154 - Copper/Zinc superoxide dismutase, at 1,305,713 to 1,306,231 _1154 Psyr_1155: Psyr_1155 - conserved hypothetical protein, at 1,306,345 to 1,306,554 _1155 Psyr_1156: Psyr_1156 - Peptidase M20A, peptidase V, at 1,306,913 to 1,308,652 _1156 Position (kb) 1305 1306 1307Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1304.827 kb on + strand, within Psyr_1153at 1304.828 kb on - strand, within Psyr_1153at 1304.828 kb on - strand, within Psyr_1153at 1304.856 kb on - strand, within Psyr_1153at 1305.089 kb on + strand, within Psyr_1153at 1305.089 kb on + strand, within Psyr_1153at 1305.559 kb on + strandat 1305.559 kb on + strandat 1305.560 kb on - strandat 1305.560 kb on - strandat 1305.713 kb on - strandat 1305.713 kb on - strandat 1306.061 kb on + strand, within Psyr_1154at 1306.062 kb on - strand, within Psyr_1154at 1306.062 kb on - strand, within Psyr_1154at 1306.062 kb on - strand, within Psyr_1154at 1306.062 kb on - strand, within Psyr_1154at 1306.253 kb on + strandat 1306.299 kb on + strandat 1306.299 kb on + strandat 1306.413 kb on - strand, within Psyr_1155at 1306.474 kb on + strand, within Psyr_1155at 1306.474 kb on + strand, within Psyr_1155at 1306.474 kb on + strand, within Psyr_1155at 1306.474 kb on + strand, within Psyr_1155at 1306.474 kb on + strand, within Psyr_1155at 1306.474 kb on + strandat 1306.474 kb on + strand, within Psyr_1155at 1306.474 kb on + strand, within Psyr_1155at 1306.474 kb on + strand, within Psyr_1155at 1306.474 kb on + strand, within Psyr_1155at 1306.475 kb on - strand, within Psyr_1155at 1306.475 kb on - strand, within Psyr_1155at 1306.475 kb on - strand, within Psyr_1155at 1306.475 kb on - strand, within Psyr_1155at 1306.475 kb on - strand, within Psyr_1155at 1306.475 kb on - strand, within Psyr_1155at 1306.475 kb on - strand, within Psyr_1155at 1306.475 kb on - strand, within Psyr_1155at 1306.475 kb on - strand, within Psyr_1155at 1306.475 kb on - strand, within Psyr_1155at 1306.475 kb on - strand, within Psyr_1155at 1306.475 kb on - strand, within Psyr_1155at 1306.475 kb on - strand, within Psyr_1155at 1306.475 kb on - strand, within Psyr_1155at 1306.475 kb on - strand, within Psyr_1155at 1306.523 kb on - strand, within Psyr_1155at 1306.602 kb on + strandat 1306.662 kb on + strandat 1306.663 kb on - strandat 1306.675 kb on + strandat 1306.675 kb on + strandat 1306.675 kb on + strandat 1306.676 kb on - strandat 1306.676 kb on - strandat 1306.676 kb on - strandat 1306.676 kb on - strandat 1306.722 kb on - strandat 1306.736 kb on + strandat 1306.761 kb on - strandat 1306.843 kb on + strandat 1306.843 kb on + strandat 1306.843 kb on + strandat 1306.843 kb on + strandat 1306.843 kb on + strandat 1306.843 kb on + strandat 1306.843 kb on + strandat 1306.843 kb on + strandat 1306.843 kb on + strandat 1306.844 kb on - strandat 1306.844 kb on - strandat 1306.844 kb on - strandat 1306.844 kb on - strandat 1306.911 kb on + strandat 1307.041 kb on + strandat 1307.041 kb on + strandat 1307.042 kb on - strandat 1307.042 kb on - strandat 1307.042 kb on - strandat 1307.042 kb on - strandat 1307.195 kb on + strand, within Psyr_1156at 1307.195 kb on + strand, within Psyr_1156at 1307.195 kb on + strand, within Psyr_1156at 1307.196 kb on - strand, within Psyr_1156at 1307.196 kb on - strand, within Psyr_1156at 1307.196 kb on - strand, within Psyr_1156at 1307.196 kb on - strand, within Psyr_1156at 1307.211 kb on - strand, within Psyr_1156at 1307.211 kb on - strand, within Psyr_1156at 1307.211 kb on - strand, within Psyr_1156

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM
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1,304,827 + Psyr_1153 0.36 -0.7
1,304,828 - Psyr_1153 0.36 -3.0
1,304,828 - Psyr_1153 0.36 -0.5
1,304,856 - Psyr_1153 0.39 -0.2
1,305,089 + Psyr_1153 0.62 -0.1
1,305,089 + Psyr_1153 0.62 -0.8
1,305,559 + -3.0
1,305,559 + -0.5
1,305,560 - -1.3
1,305,560 - -2.7
1,305,713 - +0.6
1,305,713 - +0.8
1,306,061 + Psyr_1154 0.67 -1.0
1,306,062 - Psyr_1154 0.67 -0.4
1,306,062 - Psyr_1154 0.67 -0.5
1,306,062 - Psyr_1154 0.67 -0.7
1,306,062 - Psyr_1154 0.67 -1.2
1,306,253 + +0.4
1,306,299 + -1.8
1,306,299 + +0.5
1,306,413 - Psyr_1155 0.32 +0.4
1,306,474 + Psyr_1155 0.61 +2.2
1,306,474 + Psyr_1155 0.61 +0.6
1,306,474 + Psyr_1155 0.61 +0.2
1,306,474 + Psyr_1155 0.61 -1.5
1,306,474 + Psyr_1155 0.61 +0.8
1,306,474 + +0.4
1,306,474 + Psyr_1155 0.61 +0.0
1,306,474 + Psyr_1155 0.61 +0.3
1,306,474 + Psyr_1155 0.61 +0.7
1,306,474 + Psyr_1155 0.61 -0.5
1,306,475 - Psyr_1155 0.62 +0.2
1,306,475 - Psyr_1155 0.62 +0.6
1,306,475 - Psyr_1155 0.62 +2.2
1,306,475 - Psyr_1155 0.62 +1.8
1,306,475 - Psyr_1155 0.62 -0.5
1,306,475 - Psyr_1155 0.62 -1.1
1,306,475 - Psyr_1155 0.62 -0.4
1,306,475 - Psyr_1155 0.62 +1.2
1,306,475 - Psyr_1155 0.62 +0.9
1,306,475 - Psyr_1155 0.62 -0.6
1,306,475 - Psyr_1155 0.62 +0.6
1,306,475 - Psyr_1155 0.62 -0.1
1,306,475 - Psyr_1155 0.62 -1.3
1,306,475 - Psyr_1155 0.62 -0.5
1,306,475 - Psyr_1155 0.62 +1.3
1,306,523 - Psyr_1155 0.85 -0.6
1,306,602 + +0.6
1,306,662 + -0.2
1,306,663 - +0.2
1,306,675 + -0.2
1,306,675 + -1.8
1,306,675 + +0.9
1,306,676 - +0.8
1,306,676 - -0.2
1,306,676 - -1.8
1,306,676 - -0.3
1,306,722 - +0.4
1,306,736 + -0.9
1,306,761 - -0.5
1,306,843 + +1.7
1,306,843 + -0.2
1,306,843 + -1.4
1,306,843 + +1.2
1,306,843 + +0.4
1,306,843 + +0.4
1,306,843 + -2.4
1,306,843 + -1.9
1,306,843 + -0.1
1,306,844 - -0.3
1,306,844 - -0.3
1,306,844 - +1.4
1,306,844 - +0.5
1,306,911 + +0.7
1,307,041 + +0.8
1,307,041 + -1.8
1,307,042 - -0.4
1,307,042 - +0.4
1,307,042 - -0.7
1,307,042 - -1.0
1,307,195 + Psyr_1156 0.16 -0.5
1,307,195 + Psyr_1156 0.16 +1.2
1,307,195 + Psyr_1156 0.16 -2.0
1,307,196 - Psyr_1156 0.16 +1.2
1,307,196 - Psyr_1156 0.16 -2.6
1,307,196 - Psyr_1156 0.16 -0.8
1,307,196 - Psyr_1156 0.16 -0.2
1,307,211 - Psyr_1156 0.17 +0.0
1,307,211 - Psyr_1156 0.17 -0.4
1,307,211 - Psyr_1156 0.17 -1.7

Or see this region's nucleotide sequence