Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1093 and Psyr_1094 are separated by 128 nucleotides Psyr_1094 and Psyr_1095 are separated by 411 nucleotides
Psyr_1093: Psyr_1093 - permease YjgP/YjgQ, at 1,235,580 to 1,236,641
_1093
Psyr_1094: Psyr_1094 - cold-shock DNA-binding protein family, at 1,236,770 to 1,236,982
_1094
Psyr_1095: Psyr_1095 - Glycine cleavage system T protein, at 1,237,394 to 1,238,518
_1095
Position (kb) 1236
1237 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1236.640 kb on - strand at 1236.750 kb on - strand at 1236.890 kb on + strand, within Psyr_1094 at 1236.890 kb on + strand, within Psyr_1094 at 1236.890 kb on + strand, within Psyr_1094 at 1236.891 kb on - strand, within Psyr_1094 at 1236.891 kb on - strand, within Psyr_1094 at 1236.922 kb on + strand, within Psyr_1094 at 1236.923 kb on - strand, within Psyr_1094 at 1236.923 kb on - strand, within Psyr_1094 at 1237.063 kb on + strand at 1237.072 kb on + strand at 1237.072 kb on + strand at 1237.072 kb on + strand at 1237.073 kb on - strand at 1237.084 kb on + strand at 1237.084 kb on + strand at 1237.085 kb on - strand at 1237.085 kb on - strand at 1237.100 kb on - strand at 1237.171 kb on + strand at 1237.171 kb on + strand at 1237.172 kb on - strand at 1237.172 kb on - strand at 1237.172 kb on - strand at 1237.215 kb on - strand at 1237.216 kb on + strand at 1237.217 kb on - strand at 1237.217 kb on - strand at 1237.217 kb on - strand at 1237.233 kb on + strand at 1237.234 kb on - strand at 1237.234 kb on - strand at 1237.274 kb on + strand at 1237.277 kb on - strand at 1237.293 kb on + strand at 1237.293 kb on + strand at 1237.294 kb on - strand at 1237.294 kb on - strand at 1237.294 kb on - strand at 1237.295 kb on + strand at 1237.295 kb on + strand at 1237.295 kb on + strand at 1237.296 kb on - strand at 1237.296 kb on - strand at 1237.296 kb on - strand at 1237.296 kb on - strand at 1237.296 kb on - strand at 1237.323 kb on - strand at 1237.323 kb on - strand at 1237.391 kb on + strand at 1237.407 kb on + strand at 1237.408 kb on - strand at 1237.408 kb on - strand at 1237.497 kb on + strand at 1237.498 kb on - strand at 1237.498 kb on - strand at 1237.498 kb on - strand at 1237.751 kb on + strand, within Psyr_1095 at 1237.853 kb on - strand, within Psyr_1095 at 1237.944 kb on + strand, within Psyr_1095 at 1237.945 kb on - strand, within Psyr_1095 at 1237.945 kb on - strand, within Psyr_1095 at 1237.962 kb on + strand, within Psyr_1095 at 1237.962 kb on + strand, within Psyr_1095 at 1237.962 kb on + strand, within Psyr_1095 at 1237.962 kb on + strand, within Psyr_1095 at 1237.963 kb on - strand, within Psyr_1095 at 1237.963 kb on - strand, within Psyr_1095
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 1,236,640 - +0.2 1,236,750 - -0.6 1,236,890 + Psyr_1094 0.56 -1.5 1,236,890 + Psyr_1094 0.56 -0.8 1,236,890 + Psyr_1094 0.56 -1.2 1,236,891 - Psyr_1094 0.57 -0.3 1,236,891 - Psyr_1094 0.57 -0.8 1,236,922 + Psyr_1094 0.71 -1.9 1,236,923 - Psyr_1094 0.72 -1.9 1,236,923 - Psyr_1094 0.72 -2.9 1,237,063 + +0.3 1,237,072 + -0.8 1,237,072 + +0.7 1,237,072 + -1.7 1,237,073 - -0.8 1,237,084 + -1.9 1,237,084 + +0.4 1,237,085 - +0.3 1,237,085 - +0.4 1,237,100 - -1.9 1,237,171 + -0.5 1,237,171 + -2.3 1,237,172 - -1.7 1,237,172 - +0.4 1,237,172 - +0.1 1,237,215 - +0.3 1,237,216 + -1.0 1,237,217 - +1.6 1,237,217 - +0.4 1,237,217 - -0.1 1,237,233 + -1.1 1,237,234 - -0.6 1,237,234 - +0.7 1,237,274 + +0.4 1,237,277 - -0.7 1,237,293 + -0.7 1,237,293 + -0.9 1,237,294 - +2.4 1,237,294 - -0.8 1,237,294 - -0.5 1,237,295 + +0.6 1,237,295 + -2.1 1,237,295 + -0.1 1,237,296 - +0.2 1,237,296 - +0.2 1,237,296 - +0.2 1,237,296 - -1.0 1,237,296 - +1.1 1,237,323 - -3.0 1,237,323 - -1.8 1,237,391 + +0.7 1,237,407 + -0.1 1,237,408 - +0.9 1,237,408 - +0.6 1,237,497 + -0.3 1,237,498 - +2.8 1,237,498 - +0.0 1,237,498 - +0.5 1,237,751 + Psyr_1095 0.32 -0.3 1,237,853 - Psyr_1095 0.41 +0.8 1,237,944 + Psyr_1095 0.49 -0.2 1,237,945 - Psyr_1095 0.49 -2.9 1,237,945 - Psyr_1095 0.49 -0.4 1,237,962 + Psyr_1095 0.50 -0.5 1,237,962 + Psyr_1095 0.50 +2.4 1,237,962 + Psyr_1095 0.50 -0.6 1,237,962 + Psyr_1095 0.50 +3.8 1,237,963 - Psyr_1095 0.51 -1.6 1,237,963 - Psyr_1095 0.51 -0.7
Or see this region's nucleotide sequence