Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1056

Experiment: KB with Ginkgolide A 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1055 and Psyr_1056 are separated by 190 nucleotidesPsyr_1056 and Psyr_1057 are separated by 8 nucleotides Psyr_1055: Psyr_1055 - Membrane bound O-acyl transferase, MBOAT, at 1,193,050 to 1,194,606 _1055 Psyr_1056: Psyr_1056 - Poly(beta-D-mannuronate) lyase, at 1,194,797 to 1,195,933 _1056 Psyr_1057: Psyr_1057 - alginate biosynthesis protein AlgX, at 1,195,942 to 1,197,381 _1057 Position (kb) 1194 1195 1196Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1193.801 kb on + strand, within Psyr_1055at 1193.801 kb on + strand, within Psyr_1055at 1193.801 kb on + strand, within Psyr_1055at 1193.801 kb on + strand, within Psyr_1055at 1193.801 kb on + strand, within Psyr_1055at 1193.801 kb on + strand, within Psyr_1055at 1193.802 kb on - strand, within Psyr_1055at 1193.802 kb on - strand, within Psyr_1055at 1193.802 kb on - strand, within Psyr_1055at 1193.802 kb on - strand, within Psyr_1055at 1193.802 kb on - strand, within Psyr_1055at 1193.802 kb on - strand, within Psyr_1055at 1193.802 kb on - strand, within Psyr_1055at 1193.802 kb on - strand, within Psyr_1055at 1193.802 kb on - strand, within Psyr_1055at 1193.802 kb on - strand, within Psyr_1055at 1193.802 kb on - strand, within Psyr_1055at 1193.888 kb on + strand, within Psyr_1055at 1193.888 kb on + strand, within Psyr_1055at 1193.888 kb on + strand, within Psyr_1055at 1193.889 kb on - strand, within Psyr_1055at 1194.200 kb on + strand, within Psyr_1055at 1194.200 kb on + strand, within Psyr_1055at 1194.200 kb on + strand, within Psyr_1055at 1194.200 kb on + strand, within Psyr_1055at 1194.201 kb on - strand, within Psyr_1055at 1194.201 kb on - strand, within Psyr_1055at 1194.201 kb on - strand, within Psyr_1055at 1194.201 kb on - strand, within Psyr_1055at 1194.201 kb on - strand, within Psyr_1055at 1194.201 kb on - strand, within Psyr_1055at 1194.201 kb on - strand, within Psyr_1055at 1194.221 kb on + strand, within Psyr_1055at 1194.221 kb on + strand, within Psyr_1055at 1194.221 kb on + strand, within Psyr_1055at 1194.221 kb on + strand, within Psyr_1055at 1194.221 kb on + strand, within Psyr_1055at 1194.222 kb on - strand, within Psyr_1055at 1194.222 kb on - strand, within Psyr_1055at 1194.222 kb on - strand, within Psyr_1055at 1194.222 kb on - strand, within Psyr_1055at 1194.222 kb on - strand, within Psyr_1055at 1194.222 kb on - strand, within Psyr_1055at 1194.222 kb on - strand, within Psyr_1055at 1194.247 kb on + strand, within Psyr_1055at 1194.247 kb on + strand, within Psyr_1055at 1194.247 kb on + strand, within Psyr_1055at 1194.247 kb on + strand, within Psyr_1055at 1194.247 kb on + strand, within Psyr_1055at 1194.248 kb on - strand, within Psyr_1055at 1194.248 kb on - strand, within Psyr_1055at 1194.248 kb on - strand, within Psyr_1055at 1194.324 kb on - strand, within Psyr_1055at 1194.324 kb on - strand, within Psyr_1055at 1194.333 kb on - strand, within Psyr_1055at 1194.342 kb on + strand, within Psyr_1055at 1194.342 kb on + strand, within Psyr_1055at 1194.342 kb on + strand, within Psyr_1055at 1194.343 kb on - strand, within Psyr_1055at 1194.488 kb on + strandat 1194.488 kb on + strandat 1194.488 kb on + strandat 1194.489 kb on - strandat 1194.489 kb on - strandat 1194.489 kb on - strandat 1194.489 kb on - strandat 1194.489 kb on - strandat 1194.495 kb on + strandat 1194.495 kb on + strandat 1194.495 kb on + strandat 1194.495 kb on + strandat 1194.495 kb on + strandat 1194.496 kb on - strandat 1194.496 kb on - strandat 1194.497 kb on + strandat 1194.497 kb on + strandat 1194.497 kb on + strandat 1194.497 kb on + strandat 1194.497 kb on + strandat 1194.497 kb on + strandat 1194.497 kb on + strandat 1194.497 kb on + strandat 1194.497 kb on + strandat 1194.498 kb on - strandat 1194.498 kb on - strandat 1194.498 kb on - strandat 1194.498 kb on - strandat 1194.498 kb on - strandat 1194.498 kb on - strandat 1194.498 kb on - strandat 1194.498 kb on - strandat 1194.498 kb on - strandat 1194.498 kb on - strandat 1194.498 kb on - strandat 1194.498 kb on - strandat 1194.545 kb on + strandat 1194.545 kb on + strandat 1194.546 kb on - strandat 1194.546 kb on - strandat 1194.548 kb on + strandat 1194.548 kb on + strandat 1194.548 kb on + strandat 1194.548 kb on + strandat 1194.548 kb on + strandat 1194.548 kb on + strandat 1194.549 kb on - strandat 1194.549 kb on - strandat 1194.549 kb on - strandat 1194.549 kb on - strandat 1194.610 kb on + strandat 1194.610 kb on + strandat 1194.610 kb on + strandat 1194.610 kb on + strandat 1194.611 kb on - strandat 1194.733 kb on - strandat 1194.740 kb on + strandat 1194.740 kb on + strandat 1194.847 kb on - strandat 1194.847 kb on - strandat 1194.933 kb on + strand, within Psyr_1056at 1194.945 kb on + strand, within Psyr_1056at 1195.239 kb on + strand, within Psyr_1056at 1195.239 kb on + strand, within Psyr_1056at 1195.239 kb on + strand, within Psyr_1056at 1195.239 kb on + strand, within Psyr_1056at 1195.507 kb on + strand, within Psyr_1056at 1195.611 kb on + strand, within Psyr_1056at 1195.611 kb on + strand, within Psyr_1056at 1195.611 kb on + strand, within Psyr_1056at 1195.611 kb on + strand, within Psyr_1056at 1195.611 kb on + strand, within Psyr_1056at 1195.933 kb on + strandat 1195.933 kb on + strandat 1195.933 kb on + strandat 1195.933 kb on + strandat 1195.933 kb on + strandat 1195.934 kb on - strandat 1195.934 kb on - strandat 1195.934 kb on - strandat 1195.934 kb on - strandat 1195.946 kb on - strandat 1195.999 kb on + strandat 1195.999 kb on + strandat 1195.999 kb on + strandat 1195.999 kb on + strandat 1195.999 kb on + strandat 1196.000 kb on - strandat 1196.000 kb on - strandat 1196.175 kb on - strand, within Psyr_1057at 1196.376 kb on - strand, within Psyr_1057at 1196.399 kb on + strand, within Psyr_1057at 1196.400 kb on - strand, within Psyr_1057at 1196.465 kb on + strand, within Psyr_1057at 1196.465 kb on + strand, within Psyr_1057at 1196.531 kb on + strand, within Psyr_1057at 1196.531 kb on + strand, within Psyr_1057at 1196.531 kb on + strand, within Psyr_1057at 1196.532 kb on - strand, within Psyr_1057at 1196.532 kb on - strand, within Psyr_1057at 1196.532 kb on - strand, within Psyr_1057at 1196.532 kb on - strand, within Psyr_1057at 1196.532 kb on - strand, within Psyr_1057at 1196.558 kb on + strand, within Psyr_1057at 1196.559 kb on - strand, within Psyr_1057at 1196.672 kb on + strand, within Psyr_1057at 1196.672 kb on + strand, within Psyr_1057at 1196.673 kb on - strand, within Psyr_1057at 1196.752 kb on - strand, within Psyr_1057at 1196.752 kb on - strand, within Psyr_1057at 1196.784 kb on + strand, within Psyr_1057at 1196.784 kb on + strand, within Psyr_1057at 1196.784 kb on + strand, within Psyr_1057at 1196.829 kb on + strand, within Psyr_1057at 1196.844 kb on - strand, within Psyr_1057at 1196.873 kb on + strand, within Psyr_1057at 1196.873 kb on + strand, within Psyr_1057at 1196.873 kb on + strand, within Psyr_1057

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM
remove
1,193,801 + Psyr_1055 0.48 +2.2
1,193,801 + Psyr_1055 0.48 +0.3
1,193,801 + Psyr_1055 0.48 -0.1
1,193,801 + Psyr_1055 0.48 +1.1
1,193,801 + Psyr_1055 0.48 -0.7
1,193,801 + Psyr_1055 0.48 -0.2
1,193,802 - Psyr_1055 0.48 +1.2
1,193,802 - Psyr_1055 0.48 +0.7
1,193,802 - Psyr_1055 0.48 +0.2
1,193,802 - Psyr_1055 0.48 -0.3
1,193,802 - Psyr_1055 0.48 +0.6
1,193,802 - Psyr_1055 0.48 +0.4
1,193,802 - Psyr_1055 0.48 -0.4
1,193,802 - Psyr_1055 0.48 +0.5
1,193,802 - Psyr_1055 0.48 +0.4
1,193,802 - Psyr_1055 0.48 +1.2
1,193,802 - Psyr_1055 0.48 +2.4
1,193,888 + Psyr_1055 0.54 +0.4
1,193,888 + Psyr_1055 0.54 +0.3
1,193,888 + Psyr_1055 0.54 -0.9
1,193,889 - Psyr_1055 0.54 +1.2
1,194,200 + Psyr_1055 0.74 -1.4
1,194,200 + Psyr_1055 0.74 -1.3
1,194,200 + Psyr_1055 0.74 -0.6
1,194,200 + Psyr_1055 0.74 -0.6
1,194,201 - Psyr_1055 0.74 +0.7
1,194,201 - Psyr_1055 0.74 +0.4
1,194,201 - Psyr_1055 0.74 +0.1
1,194,201 - Psyr_1055 0.74 -0.5
1,194,201 - Psyr_1055 0.74 -1.9
1,194,201 - Psyr_1055 0.74 +0.6
1,194,201 - Psyr_1055 0.74 +0.8
1,194,221 + Psyr_1055 0.75 +0.8
1,194,221 + Psyr_1055 0.75 -1.1
1,194,221 + Psyr_1055 0.75 +3.0
1,194,221 + Psyr_1055 0.75 -2.5
1,194,221 + Psyr_1055 0.75 -0.6
1,194,222 - Psyr_1055 0.75 -0.4
1,194,222 - Psyr_1055 0.75 +0.9
1,194,222 - Psyr_1055 0.75 -1.6
1,194,222 - Psyr_1055 0.75 -0.1
1,194,222 - Psyr_1055 0.75 -0.8
1,194,222 - Psyr_1055 0.75 +1.1
1,194,222 - Psyr_1055 0.75 -0.3
1,194,247 + Psyr_1055 0.77 -1.8
1,194,247 + Psyr_1055 0.77 -1.9
1,194,247 + Psyr_1055 0.77 -1.4
1,194,247 + Psyr_1055 0.77 -1.6
1,194,247 + Psyr_1055 0.77 +1.9
1,194,248 - Psyr_1055 0.77 -0.6
1,194,248 - Psyr_1055 0.77 -0.6
1,194,248 - Psyr_1055 0.77 -0.3
1,194,324 - Psyr_1055 0.82 +0.3
1,194,324 - Psyr_1055 0.82 -0.8
1,194,333 - Psyr_1055 0.82 +2.1
1,194,342 + Psyr_1055 0.83 +0.7
1,194,342 + Psyr_1055 0.83 +1.5
1,194,342 + Psyr_1055 0.83 -0.6
1,194,343 - Psyr_1055 0.83 +0.0
1,194,488 + +0.9
1,194,488 + -0.3
1,194,488 + -2.8
1,194,489 - +0.3
1,194,489 - -1.4
1,194,489 - +1.2
1,194,489 - -2.5
1,194,489 - +0.1
1,194,495 + -0.1
1,194,495 + -2.6
1,194,495 + -0.5
1,194,495 + +3.5
1,194,495 + -1.6
1,194,496 - +1.0
1,194,496 - +1.9
1,194,497 + +0.9
1,194,497 + -2.9
1,194,497 + +0.6
1,194,497 + -0.8
1,194,497 + +0.2
1,194,497 + +0.9
1,194,497 + -0.8
1,194,497 + +1.2
1,194,497 + -2.5
1,194,498 - -0.4
1,194,498 - -0.5
1,194,498 - +0.3
1,194,498 - -1.0
1,194,498 - +0.9
1,194,498 - +0.8
1,194,498 - -0.6
1,194,498 - -1.1
1,194,498 - -0.8
1,194,498 - -0.4
1,194,498 - -1.0
1,194,498 - -2.8
1,194,545 + +0.2
1,194,545 + -0.1
1,194,546 - -0.3
1,194,546 - -1.9
1,194,548 + +1.2
1,194,548 + +2.2
1,194,548 + +0.0
1,194,548 + -0.2
1,194,548 + -2.7
1,194,548 + +2.6
1,194,549 - -0.5
1,194,549 - -1.1
1,194,549 - -1.8
1,194,549 - +0.9
1,194,610 + +0.4
1,194,610 + -1.7
1,194,610 + +2.5
1,194,610 + -0.4
1,194,611 - -0.9
1,194,733 - -0.1
1,194,740 + +0.6
1,194,740 + -0.6
1,194,847 - -0.5
1,194,847 - -0.8
1,194,933 + Psyr_1056 0.12 +0.1
1,194,945 + Psyr_1056 0.13 -0.3
1,195,239 + Psyr_1056 0.39 -2.6
1,195,239 + Psyr_1056 0.39 -1.0
1,195,239 + Psyr_1056 0.39 -2.1
1,195,239 + Psyr_1056 0.39 -1.9
1,195,507 + Psyr_1056 0.62 +1.9
1,195,611 + Psyr_1056 0.72 -1.0
1,195,611 + Psyr_1056 0.72 -0.8
1,195,611 + Psyr_1056 0.72 +2.2
1,195,611 + Psyr_1056 0.72 -1.5
1,195,611 + Psyr_1056 0.72 -0.1
1,195,933 + +0.1
1,195,933 + -0.0
1,195,933 + +0.7
1,195,933 + +1.8
1,195,933 + -2.1
1,195,934 - -0.0
1,195,934 - +0.7
1,195,934 - -1.2
1,195,934 - +0.3
1,195,946 - +0.0
1,195,999 + +1.7
1,195,999 + +0.5
1,195,999 + +0.7
1,195,999 + +0.8
1,195,999 + -1.0
1,196,000 - -1.6
1,196,000 - +0.2
1,196,175 - Psyr_1057 0.16 -0.1
1,196,376 - Psyr_1057 0.30 +0.1
1,196,399 + Psyr_1057 0.32 +0.1
1,196,400 - Psyr_1057 0.32 +0.3
1,196,465 + Psyr_1057 0.36 -2.8
1,196,465 + Psyr_1057 0.36 -0.8
1,196,531 + Psyr_1057 0.41 +1.3
1,196,531 + Psyr_1057 0.41 -0.7
1,196,531 + Psyr_1057 0.41 +0.3
1,196,532 - Psyr_1057 0.41 -1.1
1,196,532 - Psyr_1057 0.41 -0.0
1,196,532 - Psyr_1057 0.41 -1.6
1,196,532 - Psyr_1057 0.41 -1.9
1,196,532 - Psyr_1057 0.41 -1.0
1,196,558 + Psyr_1057 0.43 +1.4
1,196,559 - Psyr_1057 0.43 -0.6
1,196,672 + Psyr_1057 0.51 -1.1
1,196,672 + Psyr_1057 0.51 -1.2
1,196,673 - Psyr_1057 0.51 -0.4
1,196,752 - Psyr_1057 0.56 -0.8
1,196,752 - Psyr_1057 0.56 -0.5
1,196,784 + Psyr_1057 0.58 -0.7
1,196,784 + Psyr_1057 0.58 -0.8
1,196,784 + Psyr_1057 0.58 +0.2
1,196,829 + Psyr_1057 0.62 +1.2
1,196,844 - Psyr_1057 0.63 -0.2
1,196,873 + Psyr_1057 0.65 +1.2
1,196,873 + Psyr_1057 0.65 -0.2
1,196,873 + Psyr_1057 0.65 -0.4

Or see this region's nucleotide sequence