Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1048

Experiment: KB with Ginkgolide A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1046 and Psyr_1047 overlap by 14 nucleotidesPsyr_1047 and Psyr_1048 are separated by 25 nucleotidesPsyr_1048 and Psyr_1049 are separated by 71 nucleotidesPsyr_1049 and Psyr_1050 are separated by 15 nucleotides Psyr_1046: Psyr_1046 - Fusaric acid resistance protein conserved region, at 1,181,823 to 1,184,012 _1046 Psyr_1047: Psyr_1047 - conserved hypothetical protein, at 1,183,999 to 1,184,202 _1047 Psyr_1048: Psyr_1048 - Secretion protein HlyD, at 1,184,228 to 1,185,088 _1048 Psyr_1049: Psyr_1049 - Short-chain dehydrogenase/reductase SDR, at 1,185,160 to 1,185,978 _1049 Psyr_1050: Psyr_1050 - conserved hypothetical protein, at 1,185,994 to 1,186,458 _1050 Position (kb) 1184 1185 1186Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1183.369 kb on - strand, within Psyr_1046at 1183.377 kb on + strand, within Psyr_1046at 1183.395 kb on + strand, within Psyr_1046at 1183.395 kb on + strand, within Psyr_1046at 1183.395 kb on + strand, within Psyr_1046at 1183.445 kb on + strand, within Psyr_1046at 1183.445 kb on + strand, within Psyr_1046at 1183.446 kb on - strand, within Psyr_1046at 1183.446 kb on - strand, within Psyr_1046at 1183.726 kb on - strand, within Psyr_1046at 1183.726 kb on - strand, within Psyr_1046at 1183.911 kb on + strandat 1183.912 kb on - strandat 1183.966 kb on - strandat 1184.015 kb on + strandat 1184.015 kb on + strandat 1184.016 kb on - strandat 1184.016 kb on - strandat 1184.032 kb on + strand, within Psyr_1047at 1184.032 kb on + strand, within Psyr_1047at 1184.032 kb on + strand, within Psyr_1047at 1184.032 kb on + strand, within Psyr_1047at 1184.032 kb on + strand, within Psyr_1047at 1184.032 kb on + strand, within Psyr_1047at 1184.032 kb on + strand, within Psyr_1047at 1184.032 kb on + strand, within Psyr_1047at 1184.032 kb on + strand, within Psyr_1047at 1184.032 kb on + strand, within Psyr_1047at 1184.032 kb on + strand, within Psyr_1047at 1184.032 kb on + strand, within Psyr_1047at 1184.032 kb on + strand, within Psyr_1047at 1184.033 kb on - strand, within Psyr_1047at 1184.033 kb on - strand, within Psyr_1047at 1184.033 kb on - strand, within Psyr_1047at 1184.033 kb on - strand, within Psyr_1047at 1184.033 kb on - strand, within Psyr_1047at 1184.033 kb on - strand, within Psyr_1047at 1184.033 kb on - strand, within Psyr_1047at 1184.033 kb on - strand, within Psyr_1047at 1184.033 kb on - strand, within Psyr_1047at 1184.033 kb on - strand, within Psyr_1047at 1184.033 kb on - strand, within Psyr_1047at 1184.033 kb on - strand, within Psyr_1047at 1184.161 kb on - strand, within Psyr_1047at 1184.161 kb on - strand, within Psyr_1047at 1184.309 kb on + strandat 1184.309 kb on + strandat 1184.310 kb on - strandat 1184.310 kb on - strandat 1184.310 kb on - strandat 1184.706 kb on - strand, within Psyr_1048at 1184.738 kb on + strand, within Psyr_1048at 1184.738 kb on + strand, within Psyr_1048at 1184.738 kb on + strand, within Psyr_1048at 1184.738 kb on + strand, within Psyr_1048at 1184.912 kb on + strand, within Psyr_1048at 1184.912 kb on + strand, within Psyr_1048at 1184.912 kb on + strand, within Psyr_1048at 1184.913 kb on - strand, within Psyr_1048at 1184.913 kb on - strand, within Psyr_1048at 1184.913 kb on - strand, within Psyr_1048at 1184.913 kb on - strand, within Psyr_1048at 1185.089 kb on + strandat 1185.089 kb on + strandat 1185.090 kb on - strandat 1185.090 kb on - strandat 1185.090 kb on - strandat 1185.090 kb on - strandat 1185.090 kb on - strandat 1185.090 kb on - strandat 1185.144 kb on + strandat 1185.336 kb on + strand, within Psyr_1049at 1185.337 kb on - strand, within Psyr_1049at 1185.337 kb on - strand, within Psyr_1049at 1185.337 kb on - strand, within Psyr_1049at 1185.337 kb on - strand, within Psyr_1049at 1185.487 kb on + strand, within Psyr_1049at 1185.557 kb on + strand, within Psyr_1049at 1185.673 kb on + strand, within Psyr_1049at 1185.673 kb on + strand, within Psyr_1049at 1185.674 kb on - strand, within Psyr_1049at 1185.833 kb on - strand, within Psyr_1049at 1185.961 kb on - strandat 1186.015 kb on + strandat 1186.015 kb on + strandat 1186.015 kb on + strandat 1186.015 kb on + strandat 1186.015 kb on + strandat 1186.015 kb on + strandat 1186.015 kb on + strandat 1186.015 kb on + strandat 1186.016 kb on - strandat 1186.016 kb on - strandat 1186.016 kb on - strandat 1186.016 kb on - strandat 1186.016 kb on - strandat 1186.016 kb on - strandat 1186.016 kb on - strandat 1186.016 kb on - strandat 1186.016 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM
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1,183,369 - Psyr_1046 0.71 -1.6
1,183,377 + Psyr_1046 0.71 +0.3
1,183,395 + Psyr_1046 0.72 -0.6
1,183,395 + Psyr_1046 0.72 +0.5
1,183,395 + Psyr_1046 0.72 -0.0
1,183,445 + Psyr_1046 0.74 +0.4
1,183,445 + Psyr_1046 0.74 -1.3
1,183,446 - Psyr_1046 0.74 -1.7
1,183,446 - Psyr_1046 0.74 +1.0
1,183,726 - Psyr_1046 0.87 +0.5
1,183,726 - Psyr_1046 0.87 -0.8
1,183,911 + -0.3
1,183,912 - +0.5
1,183,966 - +0.6
1,184,015 + -0.7
1,184,015 + -0.4
1,184,016 - +3.5
1,184,016 - -1.8
1,184,032 + Psyr_1047 0.16 +0.6
1,184,032 + Psyr_1047 0.16 +0.5
1,184,032 + Psyr_1047 0.16 -2.6
1,184,032 + Psyr_1047 0.16 -1.3
1,184,032 + Psyr_1047 0.16 +0.7
1,184,032 + Psyr_1047 0.16 -0.4
1,184,032 + Psyr_1047 0.16 +0.7
1,184,032 + Psyr_1047 0.16 -0.7
1,184,032 + Psyr_1047 0.16 -0.2
1,184,032 + Psyr_1047 0.16 +1.5
1,184,032 + Psyr_1047 0.16 -1.1
1,184,032 + Psyr_1047 0.16 -1.2
1,184,032 + Psyr_1047 0.16 -0.4
1,184,033 - Psyr_1047 0.17 +1.6
1,184,033 - Psyr_1047 0.17 +0.6
1,184,033 - Psyr_1047 0.17 -0.6
1,184,033 - Psyr_1047 0.17 -1.5
1,184,033 - Psyr_1047 0.17 -1.7
1,184,033 - Psyr_1047 0.17 +0.7
1,184,033 - Psyr_1047 0.17 -0.1
1,184,033 - Psyr_1047 0.17 +0.1
1,184,033 - Psyr_1047 0.17 -0.2
1,184,033 - Psyr_1047 0.17 -1.1
1,184,033 - Psyr_1047 0.17 -1.3
1,184,033 - Psyr_1047 0.17 +0.1
1,184,161 - Psyr_1047 0.79 +1.5
1,184,161 - Psyr_1047 0.79 +1.4
1,184,309 + +0.5
1,184,309 + -0.2
1,184,310 - +0.4
1,184,310 - -0.4
1,184,310 - +2.2
1,184,706 - Psyr_1048 0.56 +0.1
1,184,738 + Psyr_1048 0.59 +0.2
1,184,738 + Psyr_1048 0.59 +0.5
1,184,738 + Psyr_1048 0.59 +1.6
1,184,738 + Psyr_1048 0.59 -0.8
1,184,912 + Psyr_1048 0.79 +1.8
1,184,912 + Psyr_1048 0.79 +1.6
1,184,912 + Psyr_1048 0.79 +0.4
1,184,913 - Psyr_1048 0.80 +1.1
1,184,913 - Psyr_1048 0.80 -0.5
1,184,913 - Psyr_1048 0.80 +0.9
1,184,913 - Psyr_1048 0.80 -1.2
1,185,089 + -1.4
1,185,089 + -0.8
1,185,090 - +0.6
1,185,090 - +0.2
1,185,090 - -1.4
1,185,090 - -0.4
1,185,090 - -0.4
1,185,090 - -0.6
1,185,144 + +1.9
1,185,336 + Psyr_1049 0.21 +0.4
1,185,337 - Psyr_1049 0.22 +0.6
1,185,337 - Psyr_1049 0.22 -0.2
1,185,337 - Psyr_1049 0.22 -0.4
1,185,337 - Psyr_1049 0.22 -0.0
1,185,487 + Psyr_1049 0.40 +0.4
1,185,557 + Psyr_1049 0.48 +0.2
1,185,673 + Psyr_1049 0.63 -0.2
1,185,673 + Psyr_1049 0.63 -1.2
1,185,674 - Psyr_1049 0.63 -1.0
1,185,833 - Psyr_1049 0.82 -0.6
1,185,961 - -1.9
1,186,015 + +1.0
1,186,015 + -0.9
1,186,015 + +0.9
1,186,015 + +1.7
1,186,015 + +0.6
1,186,015 + +1.8
1,186,015 + +0.6
1,186,015 + +0.0
1,186,016 - -0.3
1,186,016 - +0.8
1,186,016 - -0.2
1,186,016 - +0.3
1,186,016 - -0.9
1,186,016 - +0.8
1,186,016 - +0.9
1,186,016 - -0.1
1,186,016 - +0.3

Or see this region's nucleotide sequence