Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0914

Experiment: KB with Ginkgolide A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0913 and Psyr_0914 are separated by 64 nucleotidesPsyr_0914 and Psyr_0915 are separated by 115 nucleotides Psyr_0913: Psyr_0913 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 1,036,243 to 1,038,300 _0913 Psyr_0914: Psyr_0914 - Glycosyl transferase, group 1, at 1,038,365 to 1,039,477 _0914 Psyr_0915: Psyr_0915 - NAD-dependent epimerase/dehydratase, at 1,039,593 to 1,040,489 _0915 Position (kb) 1038 1039 1040Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1037.451 kb on + strand, within Psyr_0913at 1037.929 kb on - strand, within Psyr_0913at 1038.119 kb on + strandat 1038.240 kb on + strandat 1038.301 kb on + strandat 1038.301 kb on + strandat 1038.301 kb on + strandat 1038.301 kb on + strandat 1038.302 kb on - strandat 1038.302 kb on - strandat 1038.302 kb on - strandat 1038.302 kb on - strandat 1038.384 kb on + strandat 1038.384 kb on + strandat 1038.384 kb on + strandat 1038.534 kb on - strand, within Psyr_0914at 1038.559 kb on + strand, within Psyr_0914at 1038.567 kb on + strand, within Psyr_0914at 1038.567 kb on + strand, within Psyr_0914at 1038.567 kb on + strand, within Psyr_0914at 1038.567 kb on + strand, within Psyr_0914at 1038.567 kb on + strand, within Psyr_0914at 1038.567 kb on + strand, within Psyr_0914at 1038.567 kb on + strand, within Psyr_0914at 1038.568 kb on - strand, within Psyr_0914at 1038.568 kb on - strand, within Psyr_0914at 1038.568 kb on - strand, within Psyr_0914at 1038.612 kb on + strand, within Psyr_0914at 1038.612 kb on + strand, within Psyr_0914at 1038.612 kb on + strand, within Psyr_0914at 1038.612 kb on + strand, within Psyr_0914at 1038.613 kb on - strand, within Psyr_0914at 1038.613 kb on - strand, within Psyr_0914at 1038.656 kb on + strand, within Psyr_0914at 1038.656 kb on + strand, within Psyr_0914at 1038.656 kb on + strand, within Psyr_0914at 1038.656 kb on + strand, within Psyr_0914at 1038.657 kb on - strand, within Psyr_0914at 1038.657 kb on - strand, within Psyr_0914at 1038.657 kb on - strand, within Psyr_0914at 1038.657 kb on - strand, within Psyr_0914at 1038.657 kb on - strand, within Psyr_0914at 1038.657 kb on - strand, within Psyr_0914at 1038.682 kb on - strand, within Psyr_0914at 1038.861 kb on + strand, within Psyr_0914at 1038.861 kb on + strand, within Psyr_0914at 1038.861 kb on + strand, within Psyr_0914at 1038.861 kb on + strand, within Psyr_0914at 1038.862 kb on - strand, within Psyr_0914at 1038.862 kb on - strand, within Psyr_0914at 1038.862 kb on - strand, within Psyr_0914at 1038.862 kb on - strand, within Psyr_0914at 1038.862 kb on - strand, within Psyr_0914at 1038.862 kb on - strand, within Psyr_0914at 1039.026 kb on + strand, within Psyr_0914at 1039.027 kb on - strand, within Psyr_0914at 1039.089 kb on + strand, within Psyr_0914at 1039.090 kb on - strand, within Psyr_0914at 1039.090 kb on - strand, within Psyr_0914at 1039.352 kb on - strand, within Psyr_0914at 1039.373 kb on + strandat 1039.373 kb on + strandat 1039.373 kb on + strandat 1039.374 kb on - strandat 1039.374 kb on - strandat 1039.444 kb on - strandat 1039.446 kb on + strandat 1039.447 kb on - strandat 1039.447 kb on - strandat 1039.525 kb on + strandat 1039.535 kb on + strandat 1039.555 kb on - strandat 1039.573 kb on - strandat 1039.573 kb on - strandat 1039.580 kb on - strandat 1039.580 kb on - strandat 1039.872 kb on + strand, within Psyr_0915at 1039.872 kb on + strand, within Psyr_0915at 1039.872 kb on + strand, within Psyr_0915at 1039.872 kb on + strand, within Psyr_0915at 1039.873 kb on - strand, within Psyr_0915at 1039.873 kb on - strand, within Psyr_0915at 1039.873 kb on - strand, within Psyr_0915at 1039.990 kb on + strand, within Psyr_0915at 1039.990 kb on + strand, within Psyr_0915at 1039.990 kb on + strand, within Psyr_0915at 1039.990 kb on + strand, within Psyr_0915at 1039.991 kb on - strand, within Psyr_0915at 1039.991 kb on - strand, within Psyr_0915at 1039.991 kb on - strand, within Psyr_0915at 1039.991 kb on - strand, within Psyr_0915at 1039.991 kb on - strand, within Psyr_0915at 1039.991 kb on - strand, within Psyr_0915at 1039.991 kb on - strand, within Psyr_0915at 1039.991 kb on - strand, within Psyr_0915at 1040.047 kb on + strand, within Psyr_0915at 1040.047 kb on + strand, within Psyr_0915at 1040.047 kb on + strand, within Psyr_0915at 1040.047 kb on + strand, within Psyr_0915at 1040.047 kb on + strand, within Psyr_0915at 1040.047 kb on + strand, within Psyr_0915at 1040.047 kb on + strand, within Psyr_0915at 1040.047 kb on + strand, within Psyr_0915at 1040.047 kb on + strand, within Psyr_0915at 1040.047 kb on + strand, within Psyr_0915at 1040.047 kb on + strand, within Psyr_0915at 1040.047 kb on + strand, within Psyr_0915at 1040.048 kb on - strand, within Psyr_0915at 1040.048 kb on - strand, within Psyr_0915at 1040.048 kb on - strand, within Psyr_0915at 1040.048 kb on - strand, within Psyr_0915at 1040.048 kb on - strand, within Psyr_0915at 1040.048 kb on - strand, within Psyr_0915at 1040.048 kb on - strand, within Psyr_0915at 1040.048 kb on - strand, within Psyr_0915at 1040.048 kb on - strand, within Psyr_0915at 1040.048 kb on - strand, within Psyr_0915at 1040.074 kb on + strand, within Psyr_0915at 1040.075 kb on - strand, within Psyr_0915at 1040.075 kb on - strand, within Psyr_0915at 1040.135 kb on - strand, within Psyr_0915at 1040.234 kb on - strand, within Psyr_0915at 1040.354 kb on - strand, within Psyr_0915at 1040.354 kb on - strand, within Psyr_0915at 1040.441 kb on + strandat 1040.441 kb on + strandat 1040.442 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM
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1,037,451 + Psyr_0913 0.59 -0.9
1,037,929 - Psyr_0913 0.82 -1.2
1,038,119 + +0.3
1,038,240 + -1.3
1,038,301 + +0.8
1,038,301 + +1.1
1,038,301 + -0.3
1,038,301 + +0.5
1,038,302 - +1.4
1,038,302 - +1.4
1,038,302 - -0.1
1,038,302 - +0.2
1,038,384 + -2.0
1,038,384 + -4.4
1,038,384 + -0.8
1,038,534 - Psyr_0914 0.15 -1.4
1,038,559 + Psyr_0914 0.17 -2.5
1,038,567 + Psyr_0914 0.18 -1.6
1,038,567 + Psyr_0914 0.18 -0.0
1,038,567 + Psyr_0914 0.18 -1.8
1,038,567 + Psyr_0914 0.18 -1.2
1,038,567 + Psyr_0914 0.18 -0.2
1,038,567 + Psyr_0914 0.18 +0.2
1,038,567 + Psyr_0914 0.18 -1.4
1,038,568 - Psyr_0914 0.18 -0.5
1,038,568 - Psyr_0914 0.18 -0.5
1,038,568 - Psyr_0914 0.18 -1.8
1,038,612 + Psyr_0914 0.22 -3.7
1,038,612 + Psyr_0914 0.22 -3.0
1,038,612 + Psyr_0914 0.22 -3.6
1,038,612 + Psyr_0914 0.22 -0.4
1,038,613 - Psyr_0914 0.22 -1.1
1,038,613 - Psyr_0914 0.22 -0.7
1,038,656 + Psyr_0914 0.26 -1.0
1,038,656 + Psyr_0914 0.26 -1.4
1,038,656 + Psyr_0914 0.26 -0.6
1,038,656 + Psyr_0914 0.26 -1.8
1,038,657 - Psyr_0914 0.26 +2.8
1,038,657 - Psyr_0914 0.26 -1.8
1,038,657 - Psyr_0914 0.26 -1.4
1,038,657 - Psyr_0914 0.26 -1.5
1,038,657 - Psyr_0914 0.26 -2.7
1,038,657 - Psyr_0914 0.26 -1.4
1,038,682 - Psyr_0914 0.28 -0.0
1,038,861 + Psyr_0914 0.45 -3.3
1,038,861 + Psyr_0914 0.45 -2.8
1,038,861 + Psyr_0914 0.45 -3.0
1,038,861 + Psyr_0914 0.45 -1.2
1,038,862 - Psyr_0914 0.45 -1.4
1,038,862 - Psyr_0914 0.45 -0.4
1,038,862 - Psyr_0914 0.45 -0.4
1,038,862 - Psyr_0914 0.45 -1.2
1,038,862 - Psyr_0914 0.45 -0.2
1,038,862 - Psyr_0914 0.45 -3.4
1,039,026 + Psyr_0914 0.59 -1.1
1,039,027 - Psyr_0914 0.59 +0.4
1,039,089 + Psyr_0914 0.65 -1.3
1,039,090 - Psyr_0914 0.65 -0.7
1,039,090 - Psyr_0914 0.65 -2.0
1,039,352 - Psyr_0914 0.89 -1.7
1,039,373 + -0.5
1,039,373 + -1.0
1,039,373 + -2.3
1,039,374 - -0.9
1,039,374 - -0.8
1,039,444 - +0.1
1,039,446 + -3.1
1,039,447 - -1.1
1,039,447 - -2.4
1,039,525 + -1.2
1,039,535 + -0.1
1,039,555 - +0.3
1,039,573 - -0.8
1,039,573 - +0.2
1,039,580 - -3.0
1,039,580 - -1.7
1,039,872 + Psyr_0915 0.31 +4.5
1,039,872 + Psyr_0915 0.31 -1.5
1,039,872 + Psyr_0915 0.31 -0.9
1,039,872 + Psyr_0915 0.31 -2.2
1,039,873 - Psyr_0915 0.31 +0.4
1,039,873 - Psyr_0915 0.31 -0.3
1,039,873 - Psyr_0915 0.31 -0.6
1,039,990 + Psyr_0915 0.44 +0.3
1,039,990 + Psyr_0915 0.44 -0.9
1,039,990 + Psyr_0915 0.44 -0.6
1,039,990 + Psyr_0915 0.44 -1.5
1,039,991 - Psyr_0915 0.44 +0.3
1,039,991 - Psyr_0915 0.44 +1.2
1,039,991 - Psyr_0915 0.44 -0.6
1,039,991 - Psyr_0915 0.44 +1.9
1,039,991 - Psyr_0915 0.44 -1.8
1,039,991 - Psyr_0915 0.44 +0.2
1,039,991 - Psyr_0915 0.44 -0.1
1,039,991 - Psyr_0915 0.44 -0.3
1,040,047 + Psyr_0915 0.51 -0.4
1,040,047 + Psyr_0915 0.51 +0.8
1,040,047 + Psyr_0915 0.51 +2.0
1,040,047 + Psyr_0915 0.51 +0.1
1,040,047 + Psyr_0915 0.51 -0.8
1,040,047 + Psyr_0915 0.51 +0.7
1,040,047 + Psyr_0915 0.51 +1.0
1,040,047 + Psyr_0915 0.51 -1.3
1,040,047 + Psyr_0915 0.51 -0.3
1,040,047 + Psyr_0915 0.51 +0.1
1,040,047 + Psyr_0915 0.51 -1.3
1,040,047 + Psyr_0915 0.51 +0.2
1,040,048 - Psyr_0915 0.51 -1.7
1,040,048 - Psyr_0915 0.51 -0.5
1,040,048 - Psyr_0915 0.51 -2.9
1,040,048 - Psyr_0915 0.51 -2.6
1,040,048 - Psyr_0915 0.51 -0.9
1,040,048 - Psyr_0915 0.51 -0.5
1,040,048 - Psyr_0915 0.51 -0.7
1,040,048 - Psyr_0915 0.51 -1.1
1,040,048 - Psyr_0915 0.51 -1.8
1,040,048 - Psyr_0915 0.51 -0.1
1,040,074 + Psyr_0915 0.54 +0.0
1,040,075 - Psyr_0915 0.54 -1.0
1,040,075 - Psyr_0915 0.54 -0.4
1,040,135 - Psyr_0915 0.60 -0.6
1,040,234 - Psyr_0915 0.71 -0.6
1,040,354 - Psyr_0915 0.85 -0.6
1,040,354 - Psyr_0915 0.85 -0.6
1,040,441 + -0.2
1,040,441 + -1.5
1,040,442 - -0.2

Or see this region's nucleotide sequence