Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0839 and Psyr_0840 are separated by 366 nucleotides Psyr_0840 and Psyr_0841 are separated by 100 nucleotides
Psyr_0839: Psyr_0839 - Deoxyribose-phosphate aldolase, at 950,669 to 951,454
_0839
Psyr_0840: Psyr_0840 - Pentapeptide repeat protein, at 951,821 to 952,165
_0840
Psyr_0841: Psyr_0841 - conserved hypothetical protein, at 952,266 to 953,936
_0841
Position (kb) 951
952
953 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 950.881 kb on + strand, within Psyr_0839 at 950.882 kb on - strand, within Psyr_0839 at 950.882 kb on - strand, within Psyr_0839 at 950.882 kb on - strand, within Psyr_0839 at 950.949 kb on + strand, within Psyr_0839 at 950.949 kb on + strand, within Psyr_0839 at 950.949 kb on + strand, within Psyr_0839 at 950.949 kb on + strand, within Psyr_0839 at 950.950 kb on - strand, within Psyr_0839 at 950.950 kb on - strand, within Psyr_0839 at 950.950 kb on - strand, within Psyr_0839 at 950.950 kb on - strand, within Psyr_0839 at 950.950 kb on - strand, within Psyr_0839 at 950.950 kb on - strand, within Psyr_0839 at 951.085 kb on + strand, within Psyr_0839 at 951.085 kb on + strand, within Psyr_0839 at 951.253 kb on - strand, within Psyr_0839 at 951.253 kb on - strand, within Psyr_0839 at 951.293 kb on - strand, within Psyr_0839 at 951.314 kb on + strand, within Psyr_0839 at 951.314 kb on + strand, within Psyr_0839 at 951.314 kb on + strand, within Psyr_0839 at 951.314 kb on + strand, within Psyr_0839 at 951.315 kb on - strand, within Psyr_0839 at 951.315 kb on - strand, within Psyr_0839 at 951.315 kb on - strand, within Psyr_0839 at 951.315 kb on - strand, within Psyr_0839 at 951.535 kb on + strand at 951.677 kb on + strand at 951.678 kb on - strand at 951.688 kb on + strand at 951.702 kb on + strand at 951.702 kb on + strand at 951.703 kb on - strand at 951.710 kb on - strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.768 kb on - strand at 951.768 kb on - strand at 951.768 kb on - strand at 951.768 kb on - strand at 951.768 kb on - strand at 951.768 kb on - strand at 951.768 kb on - strand at 951.768 kb on - strand at 951.991 kb on - strand, within Psyr_0840 at 952.129 kb on + strand, within Psyr_0840 at 952.129 kb on + strand, within Psyr_0840 at 952.129 kb on + strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.208 kb on + strand at 952.209 kb on - strand at 952.209 kb on - strand at 952.209 kb on - strand at 952.267 kb on + strand at 952.267 kb on + strand at 952.268 kb on - strand at 952.561 kb on + strand, within Psyr_0841 at 952.561 kb on + strand, within Psyr_0841 at 952.562 kb on - strand, within Psyr_0841 at 952.562 kb on - strand, within Psyr_0841 at 952.562 kb on - strand, within Psyr_0841 at 952.562 kb on - strand, within Psyr_0841 at 952.630 kb on + strand, within Psyr_0841 at 952.630 kb on + strand, within Psyr_0841 at 952.630 kb on + strand, within Psyr_0841 at 952.630 kb on + strand, within Psyr_0841 at 952.630 kb on + strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.658 kb on - strand, within Psyr_0841 at 952.658 kb on - strand, within Psyr_0841 at 952.658 kb on - strand, within Psyr_0841 at 952.658 kb on - strand, within Psyr_0841 at 952.816 kb on + strand, within Psyr_0841 at 952.816 kb on + strand, within Psyr_0841 at 952.816 kb on + strand, within Psyr_0841 at 952.816 kb on + strand, within Psyr_0841 at 952.817 kb on - strand, within Psyr_0841 at 952.817 kb on - strand, within Psyr_0841 at 952.817 kb on - strand, within Psyr_0841 at 952.837 kb on + strand, within Psyr_0841 at 952.837 kb on + strand, within Psyr_0841 at 952.837 kb on + strand, within Psyr_0841 at 952.837 kb on + strand, within Psyr_0841 at 952.837 kb on + strand, within Psyr_0841 at 952.837 kb on + strand, within Psyr_0841 at 952.837 kb on + strand, within Psyr_0841 at 952.838 kb on - strand, within Psyr_0841 at 952.838 kb on - strand, within Psyr_0841 at 952.838 kb on - strand, within Psyr_0841 at 952.838 kb on - strand, within Psyr_0841 at 952.838 kb on - strand, within Psyr_0841 at 952.838 kb on - strand, within Psyr_0841 at 952.940 kb on + strand, within Psyr_0841 at 952.943 kb on - strand, within Psyr_0841 at 953.068 kb on + strand, within Psyr_0841 at 953.069 kb on - strand, within Psyr_0841
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 950,881 + Psyr_0839 0.27 -1.0 950,882 - Psyr_0839 0.27 +1.2 950,882 - Psyr_0839 0.27 +2.2 950,882 - Psyr_0839 0.27 -2.4 950,949 + Psyr_0839 0.36 -0.5 950,949 + Psyr_0839 0.36 -1.1 950,949 + Psyr_0839 0.36 -1.2 950,949 + Psyr_0839 0.36 +0.6 950,950 - Psyr_0839 0.36 +3.2 950,950 - Psyr_0839 0.36 +2.2 950,950 - Psyr_0839 0.36 +3.5 950,950 - Psyr_0839 0.36 +1.2 950,950 - Psyr_0839 0.36 +0.6 950,950 - Psyr_0839 0.36 +0.1 951,085 + Psyr_0839 0.53 +0.3 951,085 + Psyr_0839 0.53 -0.6 951,253 - Psyr_0839 0.74 -0.4 951,253 - Psyr_0839 0.74 -0.1 951,293 - Psyr_0839 0.79 +1.2 951,314 + Psyr_0839 0.82 -0.5 951,314 + Psyr_0839 0.82 +1.0 951,314 + Psyr_0839 0.82 +1.6 951,314 + Psyr_0839 0.82 -0.4 951,315 - Psyr_0839 0.82 +0.2 951,315 - Psyr_0839 0.82 -0.6 951,315 - Psyr_0839 0.82 -1.0 951,315 - Psyr_0839 0.82 +1.0 951,535 + -0.4 951,677 + +0.1 951,678 - +1.1 951,688 + -1.8 951,702 + -0.4 951,702 + -0.2 951,703 - -1.4 951,710 - +0.7 951,767 + +2.2 951,767 + -0.6 951,767 + -2.0 951,767 + +0.1 951,767 + -0.4 951,767 + -0.9 951,767 + -0.5 951,767 + -0.2 951,767 + +0.2 951,767 + -3.5 951,767 + -0.2 951,767 + +0.2 951,768 - -1.0 951,768 - -1.0 951,768 - -1.4 951,768 - +0.8 951,768 - -0.1 951,768 - +0.7 951,768 - -2.2 951,768 - +3.5 951,991 - Psyr_0840 0.49 +3.8 952,129 + Psyr_0840 0.89 +1.0 952,129 + Psyr_0840 0.89 +0.7 952,129 + Psyr_0840 0.89 +0.2 952,130 - Psyr_0840 0.90 +0.7 952,130 - Psyr_0840 0.90 +0.7 952,130 - Psyr_0840 0.90 +2.2 952,130 - Psyr_0840 0.90 +0.3 952,130 - Psyr_0840 0.90 +0.8 952,130 - Psyr_0840 0.90 -3.6 952,130 - Psyr_0840 0.90 +2.6 952,130 - Psyr_0840 0.90 -1.9 952,130 - Psyr_0840 0.90 -0.4 952,131 + +0.5 952,131 + +1.4 952,131 + -0.8 952,131 + +0.7 952,131 + +3.5 952,131 + -0.8 952,131 + +0.0 952,131 + +2.1 952,131 + -0.6 952,131 + +0.2 952,131 + +1.2 952,131 + -0.8 952,131 + +1.5 952,132 - +0.6 952,132 - -0.9 952,132 - -1.5 952,132 - -0.6 952,132 - +0.6 952,132 - -0.7 952,132 - -0.2 952,132 - -0.5 952,132 - -1.0 952,208 + +0.2 952,209 - -1.5 952,209 - +2.2 952,209 - +0.9 952,267 + -0.0 952,267 + -0.6 952,268 - +3.2 952,561 + Psyr_0841 0.18 -0.8 952,561 + Psyr_0841 0.18 +0.6 952,562 - Psyr_0841 0.18 +1.2 952,562 - Psyr_0841 0.18 -1.8 952,562 - Psyr_0841 0.18 -0.2 952,562 - Psyr_0841 0.18 -0.6 952,630 + Psyr_0841 0.22 +1.3 952,630 + Psyr_0841 0.22 +0.5 952,630 + Psyr_0841 0.22 -1.1 952,630 + Psyr_0841 0.22 +2.2 952,630 + Psyr_0841 0.22 -3.2 952,631 - Psyr_0841 0.22 +0.8 952,631 - Psyr_0841 0.22 -0.0 952,631 - Psyr_0841 0.22 -0.9 952,631 - Psyr_0841 0.22 -0.4 952,631 - Psyr_0841 0.22 -0.7 952,631 - Psyr_0841 0.22 +1.0 952,631 - Psyr_0841 0.22 -1.2 952,631 - Psyr_0841 0.22 -0.9 952,631 - Psyr_0841 0.22 -2.0 952,631 - Psyr_0841 0.22 -2.0 952,631 - Psyr_0841 0.22 +1.2 952,631 - Psyr_0841 0.22 +0.5 952,631 - Psyr_0841 0.22 -1.4 952,658 - Psyr_0841 0.23 +0.1 952,658 - Psyr_0841 0.23 +0.2 952,658 - Psyr_0841 0.23 +1.2 952,658 - Psyr_0841 0.23 -1.2 952,816 + Psyr_0841 0.33 -0.1 952,816 + Psyr_0841 0.33 -0.1 952,816 + Psyr_0841 0.33 -1.1 952,816 + Psyr_0841 0.33 -0.7 952,817 - Psyr_0841 0.33 -0.2 952,817 - Psyr_0841 0.33 +0.7 952,817 - Psyr_0841 0.33 +0.3 952,837 + Psyr_0841 0.34 +1.6 952,837 + Psyr_0841 0.34 -0.1 952,837 + Psyr_0841 0.34 -1.1 952,837 + Psyr_0841 0.34 +0.2 952,837 + Psyr_0841 0.34 +0.9 952,837 + Psyr_0841 0.34 -1.6 952,837 + Psyr_0841 0.34 -1.1 952,838 - Psyr_0841 0.34 +0.4 952,838 - Psyr_0841 0.34 +1.2 952,838 - Psyr_0841 0.34 +0.2 952,838 - Psyr_0841 0.34 -1.8 952,838 - Psyr_0841 0.34 +1.2 952,838 - Psyr_0841 0.34 -2.9 952,940 + Psyr_0841 0.40 -0.1 952,943 - Psyr_0841 0.41 +1.7 953,068 + Psyr_0841 0.48 +0.2 953,069 - Psyr_0841 0.48 -0.1
Or see this region's nucleotide sequence