Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0782 and Psyr_0783 overlap by 4 nucleotides Psyr_0783 and Psyr_0784 are separated by 9 nucleotides Psyr_0784 and Psyr_0785 are separated by 36 nucleotides
Psyr_0782: Psyr_0782 - CheD, at 888,963 to 889,496
_0782
Psyr_0783: Psyr_0783 - MCP methyltransferase, CheR-type, at 889,493 to 890,302
_0783
Psyr_0784: Psyr_0784 - CheW-like protein, at 890,312 to 890,851
_0784
Psyr_0785: Psyr_0785 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 890,888 to 892,543
_0785
Position (kb) 890
891 Strain fitness (log2 ratio) -2
-1
0
1
2 at 889.327 kb on - strand, within Psyr_0782 at 889.339 kb on - strand, within Psyr_0782 at 889.389 kb on - strand, within Psyr_0782 at 889.467 kb on + strand at 889.467 kb on + strand at 889.468 kb on - strand at 889.468 kb on - strand at 889.468 kb on - strand at 889.578 kb on + strand, within Psyr_0783 at 889.578 kb on + strand, within Psyr_0783 at 889.579 kb on - strand, within Psyr_0783 at 889.579 kb on - strand, within Psyr_0783 at 889.579 kb on - strand, within Psyr_0783 at 889.579 kb on - strand, within Psyr_0783 at 889.644 kb on + strand, within Psyr_0783 at 889.644 kb on + strand, within Psyr_0783 at 889.645 kb on - strand, within Psyr_0783 at 889.794 kb on + strand, within Psyr_0783 at 889.794 kb on + strand, within Psyr_0783 at 889.794 kb on + strand, within Psyr_0783 at 889.794 kb on + strand, within Psyr_0783 at 889.794 kb on + strand, within Psyr_0783 at 889.795 kb on - strand, within Psyr_0783 at 889.795 kb on - strand, within Psyr_0783 at 889.795 kb on - strand, within Psyr_0783 at 889.948 kb on - strand, within Psyr_0783 at 890.064 kb on + strand, within Psyr_0783 at 890.065 kb on - strand, within Psyr_0783 at 890.065 kb on - strand, within Psyr_0783 at 890.065 kb on - strand, within Psyr_0783 at 890.142 kb on + strand, within Psyr_0783 at 890.143 kb on - strand, within Psyr_0783 at 890.151 kb on + strand, within Psyr_0783 at 890.151 kb on + strand, within Psyr_0783 at 890.151 kb on + strand, within Psyr_0783 at 890.151 kb on + strand, within Psyr_0783 at 890.152 kb on - strand, within Psyr_0783 at 890.152 kb on - strand, within Psyr_0783 at 890.166 kb on + strand, within Psyr_0783 at 890.166 kb on + strand, within Psyr_0783 at 890.167 kb on - strand, within Psyr_0783 at 890.244 kb on + strand at 890.244 kb on + strand at 890.244 kb on + strand at 890.245 kb on - strand at 890.245 kb on - strand at 890.294 kb on - strand at 890.294 kb on - strand at 890.724 kb on + strand, within Psyr_0784 at 890.724 kb on + strand, within Psyr_0784 at 891.106 kb on + strand, within Psyr_0785 at 891.739 kb on + strand, within Psyr_0785 at 891.740 kb on - strand, within Psyr_0785
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 889,327 - Psyr_0782 0.68 -1.4 889,339 - Psyr_0782 0.70 +0.7 889,389 - Psyr_0782 0.80 +1.1 889,467 + +0.6 889,467 + -1.4 889,468 - -0.7 889,468 - +0.0 889,468 - +1.4 889,578 + Psyr_0783 0.10 +0.3 889,578 + Psyr_0783 0.10 -0.4 889,579 - Psyr_0783 0.11 -0.1 889,579 - Psyr_0783 0.11 +0.4 889,579 - Psyr_0783 0.11 +0.6 889,579 - Psyr_0783 0.11 +1.1 889,644 + Psyr_0783 0.19 -2.5 889,644 + Psyr_0783 0.19 -0.3 889,645 - Psyr_0783 0.19 -0.8 889,794 + Psyr_0783 0.37 +0.4 889,794 + Psyr_0783 0.37 +0.1 889,794 + Psyr_0783 0.37 -0.4 889,794 + Psyr_0783 0.37 -0.4 889,794 + Psyr_0783 0.37 +0.0 889,795 - Psyr_0783 0.37 +2.6 889,795 - Psyr_0783 0.37 +0.4 889,795 - Psyr_0783 0.37 +0.4 889,948 - Psyr_0783 0.56 +1.0 890,064 + Psyr_0783 0.70 +0.6 890,065 - Psyr_0783 0.71 +1.6 890,065 - Psyr_0783 0.71 -0.1 890,065 - Psyr_0783 0.71 -1.4 890,142 + Psyr_0783 0.80 -1.4 890,143 - Psyr_0783 0.80 -2.4 890,151 + Psyr_0783 0.81 -0.6 890,151 + Psyr_0783 0.81 +0.2 890,151 + Psyr_0783 0.81 -0.1 890,151 + Psyr_0783 0.81 +1.4 890,152 - Psyr_0783 0.81 +2.2 890,152 - Psyr_0783 0.81 -0.8 890,166 + Psyr_0783 0.83 +0.7 890,166 + Psyr_0783 0.83 +1.2 890,167 - Psyr_0783 0.83 +0.8 890,244 + +1.3 890,244 + +1.6 890,244 + +0.8 890,245 - -0.1 890,245 - +1.0 890,294 - +0.5 890,294 - +0.7 890,724 + Psyr_0784 0.76 -1.1 890,724 + Psyr_0784 0.76 -0.5 891,106 + Psyr_0785 0.13 -0.5 891,739 + Psyr_0785 0.51 -1.4 891,740 - Psyr_0785 0.51 -0.7
Or see this region's nucleotide sequence