Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0755 and Psyr_0756 are separated by 377 nucleotides Psyr_0756 and Psyr_0757 are separated by 292 nucleotides
Psyr_0755: Psyr_0755 - conserved hypothetical protein, at 860,098 to 860,538
_0755
Psyr_0756: Psyr_0756 - indole-3-glycerol phosphate synthase, at 860,916 to 861,716
_0756
Psyr_0757: Psyr_0757 - transcriptional regulator, LacI family, at 862,009 to 863,001
_0757
Position (kb) 860
861
862 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 859.968 kb on - strand at 860.100 kb on - strand at 860.198 kb on + strand, within Psyr_0755 at 860.198 kb on + strand, within Psyr_0755 at 860.198 kb on + strand, within Psyr_0755 at 860.199 kb on - strand, within Psyr_0755 at 860.199 kb on - strand, within Psyr_0755 at 860.199 kb on - strand, within Psyr_0755 at 860.243 kb on + strand, within Psyr_0755 at 860.243 kb on + strand, within Psyr_0755 at 860.244 kb on - strand, within Psyr_0755 at 860.284 kb on + strand, within Psyr_0755 at 860.285 kb on - strand, within Psyr_0755 at 860.285 kb on - strand, within Psyr_0755 at 860.390 kb on + strand, within Psyr_0755 at 860.390 kb on + strand, within Psyr_0755 at 860.390 kb on + strand, within Psyr_0755 at 860.390 kb on + strand, within Psyr_0755 at 860.391 kb on - strand, within Psyr_0755 at 860.391 kb on - strand, within Psyr_0755 at 860.391 kb on - strand, within Psyr_0755 at 860.395 kb on - strand, within Psyr_0755 at 860.433 kb on + strand, within Psyr_0755 at 860.448 kb on + strand, within Psyr_0755 at 860.448 kb on + strand, within Psyr_0755 at 860.448 kb on + strand, within Psyr_0755 at 860.448 kb on + strand, within Psyr_0755 at 860.448 kb on + strand, within Psyr_0755 at 860.449 kb on - strand, within Psyr_0755 at 860.449 kb on - strand, within Psyr_0755 at 860.449 kb on - strand, within Psyr_0755 at 860.449 kb on - strand, within Psyr_0755 at 860.523 kb on - strand at 860.542 kb on + strand at 860.542 kb on + strand at 860.542 kb on + strand at 860.542 kb on + strand at 860.543 kb on - strand at 860.597 kb on + strand at 860.598 kb on - strand at 860.609 kb on + strand at 860.610 kb on - strand at 860.628 kb on + strand at 860.628 kb on + strand at 860.628 kb on + strand at 860.628 kb on + strand at 860.628 kb on + strand at 860.629 kb on - strand at 860.629 kb on - strand at 860.629 kb on - strand at 860.629 kb on - strand at 860.629 kb on - strand at 860.629 kb on - strand at 860.629 kb on - strand at 860.629 kb on - strand at 860.629 kb on - strand at 860.629 kb on - strand at 860.631 kb on - strand at 860.684 kb on + strand at 860.684 kb on + strand at 860.684 kb on + strand at 860.684 kb on + strand at 860.685 kb on - strand at 860.685 kb on - strand at 860.685 kb on - strand at 860.688 kb on + strand at 860.689 kb on - strand at 860.689 kb on - strand at 860.689 kb on - strand at 860.689 kb on - strand at 860.713 kb on + strand at 860.714 kb on - strand at 860.727 kb on - strand at 860.733 kb on + strand at 860.733 kb on + strand at 860.734 kb on - strand at 860.738 kb on + strand at 860.738 kb on + strand at 860.739 kb on - strand at 860.739 kb on - strand at 860.739 kb on - strand at 860.748 kb on + strand at 860.816 kb on + strand at 860.880 kb on - strand at 860.880 kb on - strand at 860.885 kb on - strand at 860.887 kb on + strand at 860.902 kb on + strand at 860.930 kb on - strand at 860.930 kb on - strand at 860.946 kb on + strand at 860.962 kb on + strand at 860.963 kb on - strand at 860.963 kb on - strand at 861.039 kb on + strand, within Psyr_0756 at 861.041 kb on + strand, within Psyr_0756 at 861.188 kb on - strand, within Psyr_0756 at 861.293 kb on + strand, within Psyr_0756 at 861.293 kb on + strand, within Psyr_0756 at 861.293 kb on + strand, within Psyr_0756 at 861.293 kb on + strand, within Psyr_0756 at 861.293 kb on + strand, within Psyr_0756 at 861.293 kb on + strand, within Psyr_0756 at 861.294 kb on - strand, within Psyr_0756 at 861.294 kb on - strand, within Psyr_0756 at 861.294 kb on - strand, within Psyr_0756 at 861.294 kb on - strand, within Psyr_0756 at 861.297 kb on + strand, within Psyr_0756 at 861.297 kb on + strand, within Psyr_0756 at 861.298 kb on - strand, within Psyr_0756 at 861.298 kb on - strand, within Psyr_0756 at 861.298 kb on - strand, within Psyr_0756 at 861.298 kb on - strand, within Psyr_0756 at 861.306 kb on + strand, within Psyr_0756 at 861.306 kb on + strand, within Psyr_0756 at 861.306 kb on + strand, within Psyr_0756 at 861.307 kb on - strand, within Psyr_0756 at 861.307 kb on - strand, within Psyr_0756 at 861.307 kb on - strand, within Psyr_0756 at 861.307 kb on - strand, within Psyr_0756 at 861.337 kb on + strand, within Psyr_0756 at 861.337 kb on + strand, within Psyr_0756 at 861.338 kb on - strand, within Psyr_0756 at 861.338 kb on - strand, within Psyr_0756 at 861.338 kb on - strand, within Psyr_0756 at 861.503 kb on + strand, within Psyr_0756 at 861.503 kb on + strand, within Psyr_0756 at 861.504 kb on - strand, within Psyr_0756 at 861.504 kb on - strand, within Psyr_0756 at 861.504 kb on - strand, within Psyr_0756 at 861.504 kb on - strand, within Psyr_0756 at 861.514 kb on + strand, within Psyr_0756 at 861.514 kb on + strand, within Psyr_0756 at 861.515 kb on - strand, within Psyr_0756 at 861.515 kb on - strand, within Psyr_0756 at 861.596 kb on + strand, within Psyr_0756 at 861.596 kb on + strand, within Psyr_0756 at 861.597 kb on - strand, within Psyr_0756 at 861.632 kb on + strand, within Psyr_0756 at 861.632 kb on + strand, within Psyr_0756 at 861.632 kb on + strand, within Psyr_0756 at 861.632 kb on + strand, within Psyr_0756 at 861.632 kb on + strand, within Psyr_0756 at 861.633 kb on - strand, within Psyr_0756 at 861.633 kb on - strand, within Psyr_0756 at 861.721 kb on + strand at 861.721 kb on + strand at 861.721 kb on + strand at 861.721 kb on + strand at 861.722 kb on - strand at 861.722 kb on - strand at 861.722 kb on - strand at 861.722 kb on - strand at 861.722 kb on - strand at 861.777 kb on + strand at 861.789 kb on - strand at 861.789 kb on - strand at 861.789 kb on - strand at 861.789 kb on - strand at 861.789 kb on - strand at 861.812 kb on + strand at 861.813 kb on - strand at 861.829 kb on + strand at 861.829 kb on + strand at 861.830 kb on - strand at 861.830 kb on - strand at 861.860 kb on - strand at 861.860 kb on - strand at 861.955 kb on + strand at 861.993 kb on + strand at 861.994 kb on - strand at 862.533 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 859,968 - +0.3 860,100 - -0.5 860,198 + Psyr_0755 0.23 +0.9 860,198 + Psyr_0755 0.23 +1.5 860,198 + Psyr_0755 0.23 +1.3 860,199 - Psyr_0755 0.23 +0.0 860,199 - Psyr_0755 0.23 -2.8 860,199 - Psyr_0755 0.23 +1.1 860,243 + Psyr_0755 0.33 +1.7 860,243 + Psyr_0755 0.33 +1.2 860,244 - Psyr_0755 0.33 -2.2 860,284 + Psyr_0755 0.42 -0.2 860,285 - Psyr_0755 0.42 +0.2 860,285 - Psyr_0755 0.42 -0.3 860,390 + Psyr_0755 0.66 -0.7 860,390 + Psyr_0755 0.66 -0.9 860,390 + Psyr_0755 0.66 -1.5 860,390 + Psyr_0755 0.66 +0.2 860,391 - Psyr_0755 0.66 -0.8 860,391 - Psyr_0755 0.66 +0.6 860,391 - Psyr_0755 0.66 +0.2 860,395 - Psyr_0755 0.67 -0.2 860,433 + Psyr_0755 0.76 -1.0 860,448 + Psyr_0755 0.79 -1.3 860,448 + Psyr_0755 0.79 -1.4 860,448 + Psyr_0755 0.79 +0.4 860,448 + Psyr_0755 0.79 -0.3 860,448 + Psyr_0755 0.79 -0.2 860,449 - Psyr_0755 0.80 +0.4 860,449 - Psyr_0755 0.80 -1.0 860,449 - Psyr_0755 0.80 -0.3 860,449 - Psyr_0755 0.80 -0.8 860,523 - +1.2 860,542 + -1.7 860,542 + -1.3 860,542 + -0.7 860,542 + -0.8 860,543 - -2.1 860,597 + +0.2 860,598 - -0.9 860,609 + -1.7 860,610 - -1.8 860,628 + +1.1 860,628 + -0.0 860,628 + +1.2 860,628 + +0.8 860,628 + +0.1 860,629 - +0.1 860,629 - -0.0 860,629 - -0.4 860,629 - +0.4 860,629 - -0.8 860,629 - -0.7 860,629 - +1.6 860,629 - -0.0 860,629 - -0.6 860,629 - -0.3 860,631 - -1.1 860,684 + +0.6 860,684 + -0.5 860,684 + +2.0 860,684 + -2.2 860,685 - -0.4 860,685 - -0.9 860,685 - +0.5 860,688 + +0.4 860,689 - +0.7 860,689 - -0.1 860,689 - +0.8 860,689 - -2.8 860,713 + +0.5 860,714 - +1.7 860,727 - -1.6 860,733 + -0.9 860,733 + -0.4 860,734 - +0.4 860,738 + +0.4 860,738 + -1.5 860,739 - +0.2 860,739 - +0.5 860,739 - -0.8 860,748 + +0.6 860,816 + +0.9 860,880 - +0.6 860,880 - -0.4 860,885 - -0.6 860,887 + -1.2 860,902 + -0.9 860,930 - -2.4 860,930 - -1.1 860,946 + +0.0 860,962 + +0.6 860,963 - +1.0 860,963 - -0.4 861,039 + Psyr_0756 0.15 -1.4 861,041 + Psyr_0756 0.16 +0.9 861,188 - Psyr_0756 0.34 +0.3 861,293 + Psyr_0756 0.47 -0.2 861,293 + Psyr_0756 0.47 -0.7 861,293 + Psyr_0756 0.47 +1.2 861,293 + Psyr_0756 0.47 +0.2 861,293 + Psyr_0756 0.47 +0.4 861,293 + Psyr_0756 0.47 -0.7 861,294 - Psyr_0756 0.47 -0.2 861,294 - Psyr_0756 0.47 -0.2 861,294 - Psyr_0756 0.47 -2.9 861,294 - Psyr_0756 0.47 -2.5 861,297 + Psyr_0756 0.48 -0.5 861,297 + Psyr_0756 0.48 -0.5 861,298 - Psyr_0756 0.48 +1.2 861,298 - Psyr_0756 0.48 -0.6 861,298 - Psyr_0756 0.48 -1.1 861,298 - Psyr_0756 0.48 -1.6 861,306 + Psyr_0756 0.49 -0.2 861,306 + Psyr_0756 0.49 +0.9 861,306 + Psyr_0756 0.49 -2.1 861,307 - Psyr_0756 0.49 +1.5 861,307 - Psyr_0756 0.49 -0.8 861,307 - Psyr_0756 0.49 -1.0 861,307 - Psyr_0756 0.49 -0.8 861,337 + Psyr_0756 0.53 +0.5 861,337 + Psyr_0756 0.53 -0.9 861,338 - Psyr_0756 0.53 -0.6 861,338 - Psyr_0756 0.53 +1.0 861,338 - Psyr_0756 0.53 -1.7 861,503 + Psyr_0756 0.73 -0.3 861,503 + Psyr_0756 0.73 +0.5 861,504 - Psyr_0756 0.73 -0.2 861,504 - Psyr_0756 0.73 -0.6 861,504 - Psyr_0756 0.73 -0.5 861,504 - Psyr_0756 0.73 -0.7 861,514 + Psyr_0756 0.75 +0.1 861,514 + Psyr_0756 0.75 -0.3 861,515 - Psyr_0756 0.75 -1.2 861,515 - Psyr_0756 0.75 -0.4 861,596 + Psyr_0756 0.85 +2.4 861,596 + Psyr_0756 0.85 -0.2 861,597 - Psyr_0756 0.85 -1.1 861,632 + Psyr_0756 0.89 -1.4 861,632 + Psyr_0756 0.89 -0.3 861,632 + Psyr_0756 0.89 -0.5 861,632 + Psyr_0756 0.89 -1.7 861,632 + Psyr_0756 0.89 -0.9 861,633 - Psyr_0756 0.90 -0.1 861,633 - Psyr_0756 0.90 +0.2 861,721 + +0.5 861,721 + -2.8 861,721 + +2.2 861,721 + +0.9 861,722 - +0.4 861,722 - +0.1 861,722 - +0.2 861,722 - -1.5 861,722 - +0.4 861,777 + -0.4 861,789 - -0.3 861,789 - -1.1 861,789 - -0.2 861,789 - +0.6 861,789 - -0.0 861,812 + +1.0 861,813 - -1.4 861,829 + -1.5 861,829 + -0.2 861,830 - +1.2 861,830 - -0.4 861,860 - -0.2 861,860 - +1.9 861,955 + +1.6 861,993 + +0.7 861,994 - -0.4 862,533 - +2.8
Or see this region's nucleotide sequence