Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0733 and Psyr_0734 are separated by 430 nucleotides Psyr_0734 and Psyr_0735 are separated by 363 nucleotides Psyr_0735 and Psyr_0736 overlap by 14 nucleotides
Psyr_0733: Psyr_0733 - Relaxase, at 838,293 to 839,249
_0733
Psyr_0734: Psyr_0734 - Protein of unknown function DUF159, at 839,680 to 840,123
_0734
Psyr_0735: Psyr_0735 - Peptidase S24, S26A and S26B, at 840,487 to 840,921
_0735
Psyr_0736: Psyr_0736 - umuC protein, at 840,908 to 841,153
_0736
Position (kb) 839
840
841 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 838.689 kb on + strand, within Psyr_0733 at 838.689 kb on + strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.690 kb on - strand, within Psyr_0733 at 838.699 kb on + strand, within Psyr_0733 at 838.699 kb on + strand, within Psyr_0733 at 838.699 kb on + strand at 838.699 kb on + strand, within Psyr_0733 at 838.699 kb on + strand, within Psyr_0733 at 838.699 kb on + strand, within Psyr_0733 at 838.700 kb on - strand, within Psyr_0733 at 838.700 kb on - strand, within Psyr_0733 at 838.700 kb on - strand, within Psyr_0733 at 838.700 kb on - strand, within Psyr_0733 at 838.726 kb on - strand, within Psyr_0733 at 838.751 kb on - strand, within Psyr_0733 at 838.751 kb on - strand, within Psyr_0733 at 838.751 kb on - strand, within Psyr_0733 at 838.763 kb on - strand, within Psyr_0733 at 838.830 kb on + strand, within Psyr_0733 at 838.830 kb on + strand, within Psyr_0733 at 838.939 kb on + strand, within Psyr_0733 at 838.939 kb on + strand, within Psyr_0733 at 838.940 kb on - strand, within Psyr_0733 at 838.940 kb on - strand, within Psyr_0733 at 838.940 kb on - strand, within Psyr_0733 at 838.940 kb on - strand, within Psyr_0733 at 838.964 kb on - strand, within Psyr_0733 at 839.005 kb on + strand, within Psyr_0733 at 839.005 kb on + strand, within Psyr_0733 at 839.005 kb on + strand, within Psyr_0733 at 839.005 kb on + strand, within Psyr_0733 at 839.006 kb on - strand, within Psyr_0733 at 839.006 kb on - strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.077 kb on + strand, within Psyr_0733 at 839.249 kb on + strand at 839.249 kb on + strand at 839.250 kb on - strand at 839.250 kb on - strand at 839.250 kb on - strand at 839.250 kb on - strand at 839.250 kb on - strand at 839.250 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.252 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.291 kb on - strand at 839.293 kb on - strand at 839.293 kb on - strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.319 kb on + strand at 839.339 kb on + strand at 839.339 kb on + strand at 839.340 kb on - strand at 839.340 kb on - strand at 839.340 kb on - strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.341 kb on + strand at 839.342 kb on - strand at 839.342 kb on - strand at 839.342 kb on - strand at 839.342 kb on - strand at 839.347 kb on + strand at 839.348 kb on - strand at 839.348 kb on - strand at 839.433 kb on - strand at 839.439 kb on + strand at 839.439 kb on + strand at 839.439 kb on + strand at 839.439 kb on + strand at 839.444 kb on - strand at 839.486 kb on + strand at 839.541 kb on + strand at 839.541 kb on + strand at 839.541 kb on + strand at 839.542 kb on - strand at 839.599 kb on + strand at 839.992 kb on - strand, within Psyr_0734 at 839.997 kb on + strand, within Psyr_0734 at 839.998 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.012 kb on - strand, within Psyr_0734 at 840.252 kb on + strand at 840.252 kb on + strand at 840.252 kb on + strand at 840.252 kb on + strand at 840.253 kb on - strand at 840.266 kb on + strand at 840.267 kb on - strand at 840.267 kb on - strand at 840.274 kb on + strand at 840.284 kb on - strand at 840.333 kb on - strand at 840.351 kb on - strand at 840.351 kb on - strand at 840.452 kb on + strand at 840.452 kb on + strand at 840.452 kb on + strand at 840.452 kb on + strand at 840.452 kb on + strand at 840.454 kb on + strand at 840.829 kb on - strand, within Psyr_0735 at 840.829 kb on - strand, within Psyr_0735 at 840.829 kb on - strand, within Psyr_0735 at 840.829 kb on - strand, within Psyr_0735 at 840.892 kb on + strand at 840.938 kb on - strand, within Psyr_0736 at 840.957 kb on - strand, within Psyr_0736 at 840.957 kb on - strand, within Psyr_0736 at 840.957 kb on - strand, within Psyr_0736 at 840.957 kb on - strand, within Psyr_0736 at 840.957 kb on - strand, within Psyr_0736 at 840.957 kb on - strand, within Psyr_0736
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 838,689 + Psyr_0733 0.41 -0.4 838,689 + Psyr_0733 0.41 -1.9 838,690 - Psyr_0733 0.41 +0.4 838,690 - Psyr_0733 0.41 +1.6 838,690 - Psyr_0733 0.41 +0.6 838,690 - Psyr_0733 0.41 -1.9 838,690 - Psyr_0733 0.41 +0.8 838,690 - Psyr_0733 0.41 -0.8 838,690 - Psyr_0733 0.41 -1.7 838,699 + Psyr_0733 0.42 +0.2 838,699 + Psyr_0733 0.42 -0.1 838,699 + +0.2 838,699 + Psyr_0733 0.42 -0.1 838,699 + Psyr_0733 0.42 -1.8 838,699 + Psyr_0733 0.42 -0.4 838,700 - Psyr_0733 0.43 -1.6 838,700 - Psyr_0733 0.43 -0.5 838,700 - Psyr_0733 0.43 +0.8 838,700 - Psyr_0733 0.43 +1.9 838,726 - Psyr_0733 0.45 +1.6 838,751 - Psyr_0733 0.48 +0.3 838,751 - Psyr_0733 0.48 -0.5 838,751 - Psyr_0733 0.48 -0.4 838,763 - Psyr_0733 0.49 -0.4 838,830 + Psyr_0733 0.56 +1.4 838,830 + Psyr_0733 0.56 -1.8 838,939 + Psyr_0733 0.68 +0.5 838,939 + Psyr_0733 0.68 -0.0 838,940 - Psyr_0733 0.68 +0.8 838,940 - Psyr_0733 0.68 +0.5 838,940 - Psyr_0733 0.68 -3.3 838,940 - Psyr_0733 0.68 -3.4 838,964 - Psyr_0733 0.70 -0.1 839,005 + Psyr_0733 0.74 +0.5 839,005 + Psyr_0733 0.74 +0.5 839,005 + Psyr_0733 0.74 +0.3 839,005 + Psyr_0733 0.74 +0.3 839,006 - Psyr_0733 0.75 +3.0 839,006 - Psyr_0733 0.75 +0.5 839,077 + Psyr_0733 0.82 +0.6 839,077 + Psyr_0733 0.82 -0.4 839,077 + Psyr_0733 0.82 +0.2 839,077 + Psyr_0733 0.82 -0.0 839,077 + Psyr_0733 0.82 -0.4 839,077 + Psyr_0733 0.82 +0.2 839,077 + Psyr_0733 0.82 +0.6 839,077 + Psyr_0733 0.82 -2.6 839,249 + -0.1 839,249 + +0.5 839,250 - +0.1 839,250 - -0.6 839,250 - -0.7 839,250 - -0.6 839,250 - +0.1 839,250 - +2.8 839,252 - -0.8 839,252 - +0.1 839,252 - -0.6 839,252 - +1.6 839,252 - +0.4 839,252 - -1.0 839,252 - -0.1 839,252 - -2.1 839,252 - +0.8 839,252 - -0.4 839,252 - -0.6 839,252 - -0.2 839,252 - +1.5 839,252 - +0.1 839,252 - +0.4 839,291 - +0.5 839,291 - -0.2 839,291 - -0.4 839,291 - +0.7 839,291 - -0.0 839,291 - -0.3 839,291 - +1.2 839,291 - +0.5 839,291 - -0.3 839,291 - -0.4 839,293 - +0.8 839,293 - +1.9 839,319 + -1.5 839,319 + +0.2 839,319 + -0.3 839,319 + +0.6 839,319 + +0.2 839,319 + +0.1 839,319 + -0.5 839,319 + +2.3 839,319 + -3.6 839,319 + -1.3 839,319 + -0.2 839,319 + +0.2 839,319 + +0.8 839,339 + -1.4 839,339 + +0.6 839,340 - -0.1 839,340 - -0.6 839,340 - -1.1 839,341 + -0.7 839,341 + +1.2 839,341 + -0.5 839,341 + -1.4 839,341 + +2.8 839,341 + -0.7 839,341 + +0.4 839,341 + +0.2 839,341 + -2.0 839,342 - -1.3 839,342 - -1.0 839,342 - +0.8 839,342 - +2.0 839,347 + -1.4 839,348 - +0.0 839,348 - -3.0 839,433 - +1.3 839,439 + -0.6 839,439 + -0.8 839,439 + -2.2 839,439 + -1.7 839,444 - -0.7 839,486 + +0.6 839,541 + -0.0 839,541 + -0.2 839,541 + -1.0 839,542 - +1.6 839,599 + +1.3 839,992 - Psyr_0734 0.70 -0.4 839,997 + Psyr_0734 0.71 +1.0 839,998 - Psyr_0734 0.72 +0.2 840,012 - Psyr_0734 0.75 -0.8 840,012 - Psyr_0734 0.75 -1.0 840,012 - Psyr_0734 0.75 +1.1 840,012 - Psyr_0734 0.75 +0.8 840,012 - Psyr_0734 0.75 +0.2 840,252 + -0.4 840,252 + +1.7 840,252 + +0.5 840,252 + +0.6 840,253 - -0.9 840,266 + +0.1 840,267 - +0.8 840,267 - +1.2 840,274 + -0.3 840,284 - +0.8 840,333 - -1.3 840,351 - -1.4 840,351 - -0.9 840,452 + -0.7 840,452 + -0.5 840,452 + -0.1 840,452 + +1.3 840,452 + -0.6 840,454 + +0.2 840,829 - Psyr_0735 0.79 -3.0 840,829 - Psyr_0735 0.79 -2.1 840,829 - Psyr_0735 0.79 -0.1 840,829 - Psyr_0735 0.79 -2.3 840,892 + -0.4 840,938 - Psyr_0736 0.12 -1.2 840,957 - Psyr_0736 0.20 -0.2 840,957 - Psyr_0736 0.20 +0.5 840,957 - Psyr_0736 0.20 +0.2 840,957 - Psyr_0736 0.20 -0.3 840,957 - Psyr_0736 0.20 -0.4 840,957 - Psyr_0736 0.20 -0.1
Or see this region's nucleotide sequence