Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0582 and Psyr_0583 are separated by 39 nucleotides Psyr_0583 and Psyr_0584 are separated by 19 nucleotides Psyr_0584 and Psyr_0585 are separated by 123 nucleotides
Psyr_0582: Psyr_0582 - SSU ribosomal protein S18P, at 664,035 to 664,265
_0582
Psyr_0583: Psyr_0583 - membrane protein, putative, at 664,305 to 665,201
_0583
Psyr_0584: Psyr_0584 - LSU ribosomal protein L9P, at 665,221 to 665,667
_0584
Psyr_0585: Psyr_0585 - primary replicative DNA helicase, at 665,791 to 667,185
_0585
Position (kb) 665
666 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 664.614 kb on + strand, within Psyr_0583 at 664.614 kb on + strand, within Psyr_0583 at 664.614 kb on + strand, within Psyr_0583 at 664.621 kb on + strand, within Psyr_0583 at 664.723 kb on + strand, within Psyr_0583 at 664.723 kb on + strand, within Psyr_0583 at 664.723 kb on + strand, within Psyr_0583 at 664.845 kb on + strand, within Psyr_0583 at 664.845 kb on + strand, within Psyr_0583 at 664.845 kb on + strand, within Psyr_0583 at 664.845 kb on + strand, within Psyr_0583 at 664.845 kb on + strand, within Psyr_0583 at 664.845 kb on + strand, within Psyr_0583 at 664.964 kb on + strand, within Psyr_0583 at 664.964 kb on + strand, within Psyr_0583 at 665.064 kb on + strand, within Psyr_0583 at 665.064 kb on + strand, within Psyr_0583 at 665.064 kb on + strand, within Psyr_0583 at 665.064 kb on + strand, within Psyr_0583 at 665.064 kb on + strand, within Psyr_0583 at 665.064 kb on + strand, within Psyr_0583 at 665.064 kb on + strand, within Psyr_0583 at 665.064 kb on + strand, within Psyr_0583 at 665.064 kb on + strand, within Psyr_0583 at 665.064 kb on + strand, within Psyr_0583 at 665.064 kb on + strand, within Psyr_0583 at 665.064 kb on + strand, within Psyr_0583 at 665.064 kb on + strand, within Psyr_0583 at 665.064 kb on + strand, within Psyr_0583 at 665.064 kb on + strand, within Psyr_0583 at 665.064 kb on + strand, within Psyr_0583 at 665.113 kb on + strand at 665.206 kb on + strand at 665.301 kb on + strand, within Psyr_0584 at 665.305 kb on + strand, within Psyr_0584 at 665.454 kb on + strand, within Psyr_0584 at 665.630 kb on + strand at 665.665 kb on + strand at 665.676 kb on + strand at 665.729 kb on + strand at 665.729 kb on + strand at 665.729 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 664,614 + Psyr_0583 0.34 -2.5 664,614 + Psyr_0583 0.34 +0.7 664,614 + Psyr_0583 0.34 +1.9 664,621 + Psyr_0583 0.35 -1.5 664,723 + Psyr_0583 0.47 -2.0 664,723 + Psyr_0583 0.47 -1.2 664,723 + Psyr_0583 0.47 -1.6 664,845 + Psyr_0583 0.60 +0.9 664,845 + Psyr_0583 0.60 -0.7 664,845 + Psyr_0583 0.60 +0.6 664,845 + Psyr_0583 0.60 -1.8 664,845 + Psyr_0583 0.60 -0.5 664,845 + Psyr_0583 0.60 -1.0 664,964 + Psyr_0583 0.73 -1.0 664,964 + Psyr_0583 0.73 -2.3 665,064 + Psyr_0583 0.85 -0.3 665,064 + Psyr_0583 0.85 -1.6 665,064 + Psyr_0583 0.85 +0.4 665,064 + Psyr_0583 0.85 -0.6 665,064 + Psyr_0583 0.85 +1.0 665,064 + Psyr_0583 0.85 -0.3 665,064 + Psyr_0583 0.85 +0.4 665,064 + Psyr_0583 0.85 +0.9 665,064 + Psyr_0583 0.85 +0.6 665,064 + Psyr_0583 0.85 -0.1 665,064 + Psyr_0583 0.85 -1.0 665,064 + Psyr_0583 0.85 -0.1 665,064 + Psyr_0583 0.85 +1.1 665,064 + Psyr_0583 0.85 -0.4 665,064 + Psyr_0583 0.85 -1.9 665,064 + Psyr_0583 0.85 +0.2 665,113 + +0.1 665,206 + -0.5 665,301 + Psyr_0584 0.18 -0.7 665,305 + Psyr_0584 0.19 +0.3 665,454 + Psyr_0584 0.52 -1.4 665,630 + +0.3 665,665 + -1.2 665,676 + -1.3 665,729 + -2.8 665,729 + -0.1 665,729 + -0.8
Or see this region's nucleotide sequence