Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0335 and Psyr_0336 are separated by 112 nucleotides Psyr_0336 and Psyr_0337 are separated by 328 nucleotides
Psyr_0335: Psyr_0335 - membrane protein, putative, at 354,656 to 355,882
_0335
Psyr_0336: Psyr_0336 - Outer membrane autotransporter barrel, at 355,995 to 358,982
_0336
Psyr_0337: Psyr_0337 - Taurine dioxygenase, at 359,311 to 360,207
_0337
Position (kb) 355
356
357
358
359 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 355.019 kb on + strand, within Psyr_0335 at 355.019 kb on + strand, within Psyr_0335 at 355.019 kb on + strand, within Psyr_0335 at 355.020 kb on - strand, within Psyr_0335 at 355.020 kb on - strand, within Psyr_0335 at 355.020 kb on - strand, within Psyr_0335 at 355.021 kb on + strand, within Psyr_0335 at 355.021 kb on + strand, within Psyr_0335 at 355.022 kb on - strand, within Psyr_0335 at 355.034 kb on + strand, within Psyr_0335 at 355.034 kb on + strand, within Psyr_0335 at 355.034 kb on + strand, within Psyr_0335 at 355.035 kb on - strand, within Psyr_0335 at 355.035 kb on - strand, within Psyr_0335 at 355.040 kb on + strand, within Psyr_0335 at 355.040 kb on + strand, within Psyr_0335 at 355.040 kb on + strand, within Psyr_0335 at 355.041 kb on - strand, within Psyr_0335 at 355.041 kb on - strand, within Psyr_0335 at 355.058 kb on + strand, within Psyr_0335 at 355.059 kb on - strand, within Psyr_0335 at 355.125 kb on + strand, within Psyr_0335 at 355.125 kb on + strand, within Psyr_0335 at 355.126 kb on - strand, within Psyr_0335 at 355.126 kb on - strand, within Psyr_0335 at 355.388 kb on + strand, within Psyr_0335 at 355.388 kb on + strand, within Psyr_0335 at 355.388 kb on + strand, within Psyr_0335 at 355.389 kb on - strand, within Psyr_0335 at 355.409 kb on + strand, within Psyr_0335 at 355.409 kb on + strand, within Psyr_0335 at 355.409 kb on + strand, within Psyr_0335 at 355.409 kb on + strand, within Psyr_0335 at 355.409 kb on + strand, within Psyr_0335 at 355.409 kb on + strand, within Psyr_0335 at 355.409 kb on + strand, within Psyr_0335 at 355.409 kb on + strand, within Psyr_0335 at 355.410 kb on - strand, within Psyr_0335 at 355.410 kb on - strand, within Psyr_0335 at 355.410 kb on - strand, within Psyr_0335 at 355.410 kb on - strand, within Psyr_0335 at 355.410 kb on - strand, within Psyr_0335 at 355.483 kb on + strand, within Psyr_0335 at 355.534 kb on + strand, within Psyr_0335 at 355.534 kb on + strand, within Psyr_0335 at 355.535 kb on - strand, within Psyr_0335 at 355.535 kb on - strand, within Psyr_0335 at 355.616 kb on + strand, within Psyr_0335 at 355.616 kb on + strand, within Psyr_0335 at 355.616 kb on + strand, within Psyr_0335 at 355.617 kb on - strand, within Psyr_0335 at 355.617 kb on - strand, within Psyr_0335 at 355.617 kb on - strand, within Psyr_0335 at 355.617 kb on - strand, within Psyr_0335 at 355.945 kb on + strand at 355.946 kb on - strand at 355.996 kb on + strand at 355.997 kb on - strand at 355.997 kb on - strand at 356.085 kb on - strand at 356.209 kb on + strand at 356.379 kb on + strand, within Psyr_0336 at 356.379 kb on + strand, within Psyr_0336 at 356.379 kb on + strand, within Psyr_0336 at 356.379 kb on + strand, within Psyr_0336 at 356.379 kb on + strand, within Psyr_0336 at 356.379 kb on + strand, within Psyr_0336 at 356.379 kb on + strand, within Psyr_0336 at 356.380 kb on - strand, within Psyr_0336 at 356.435 kb on - strand, within Psyr_0336 at 356.473 kb on + strand, within Psyr_0336 at 356.473 kb on + strand, within Psyr_0336 at 356.473 kb on + strand, within Psyr_0336 at 356.473 kb on + strand, within Psyr_0336 at 356.473 kb on + strand, within Psyr_0336 at 356.473 kb on + strand, within Psyr_0336 at 356.474 kb on - strand, within Psyr_0336 at 356.474 kb on - strand, within Psyr_0336 at 356.474 kb on - strand, within Psyr_0336 at 356.608 kb on + strand, within Psyr_0336 at 356.608 kb on + strand, within Psyr_0336 at 356.608 kb on + strand, within Psyr_0336 at 356.609 kb on - strand, within Psyr_0336 at 356.609 kb on - strand, within Psyr_0336 at 356.609 kb on - strand, within Psyr_0336 at 356.609 kb on - strand, within Psyr_0336 at 357.142 kb on + strand, within Psyr_0336 at 357.142 kb on + strand, within Psyr_0336 at 357.142 kb on + strand, within Psyr_0336 at 357.142 kb on + strand, within Psyr_0336 at 357.142 kb on + strand, within Psyr_0336 at 357.143 kb on - strand, within Psyr_0336 at 357.143 kb on - strand, within Psyr_0336 at 357.143 kb on - strand, within Psyr_0336 at 357.143 kb on - strand, within Psyr_0336 at 357.143 kb on - strand, within Psyr_0336 at 357.143 kb on - strand, within Psyr_0336 at 357.282 kb on - strand, within Psyr_0336 at 357.282 kb on - strand, within Psyr_0336 at 357.350 kb on - strand, within Psyr_0336 at 357.350 kb on - strand, within Psyr_0336 at 357.663 kb on + strand, within Psyr_0336 at 357.754 kb on + strand, within Psyr_0336 at 357.754 kb on + strand, within Psyr_0336 at 357.755 kb on - strand, within Psyr_0336 at 357.922 kb on + strand, within Psyr_0336 at 357.922 kb on + strand, within Psyr_0336 at 357.923 kb on - strand, within Psyr_0336 at 357.941 kb on - strand, within Psyr_0336 at 358.108 kb on + strand, within Psyr_0336 at 358.109 kb on - strand, within Psyr_0336 at 358.109 kb on - strand, within Psyr_0336 at 358.126 kb on + strand, within Psyr_0336 at 358.126 kb on + strand, within Psyr_0336 at 358.127 kb on - strand, within Psyr_0336 at 358.127 kb on - strand, within Psyr_0336 at 358.127 kb on - strand, within Psyr_0336 at 358.226 kb on - strand, within Psyr_0336 at 358.300 kb on + strand, within Psyr_0336 at 358.300 kb on + strand, within Psyr_0336 at 358.300 kb on + strand, within Psyr_0336 at 358.300 kb on + strand, within Psyr_0336 at 358.300 kb on + strand, within Psyr_0336 at 358.301 kb on - strand, within Psyr_0336 at 358.432 kb on + strand, within Psyr_0336 at 358.433 kb on - strand, within Psyr_0336 at 358.433 kb on - strand, within Psyr_0336 at 358.433 kb on - strand, within Psyr_0336 at 358.444 kb on + strand, within Psyr_0336 at 358.444 kb on + strand, within Psyr_0336 at 358.445 kb on - strand, within Psyr_0336 at 358.445 kb on - strand, within Psyr_0336 at 358.445 kb on - strand, within Psyr_0336 at 358.582 kb on + strand, within Psyr_0336 at 358.583 kb on - strand, within Psyr_0336 at 358.583 kb on - strand, within Psyr_0336 at 358.583 kb on - strand, within Psyr_0336 at 358.693 kb on + strand at 358.693 kb on + strand at 358.727 kb on + strand at 358.727 kb on + strand at 358.728 kb on - strand at 358.757 kb on + strand at 358.757 kb on + strand at 358.757 kb on + strand at 358.757 kb on + strand at 358.757 kb on + strand at 358.758 kb on - strand at 358.758 kb on - strand at 358.759 kb on + strand at 358.759 kb on + strand at 358.759 kb on + strand at 358.759 kb on + strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.760 kb on - strand at 358.798 kb on + strand at 358.798 kb on + strand at 358.799 kb on - strand at 358.799 kb on - strand at 358.991 kb on + strand at 358.991 kb on + strand at 358.991 kb on + strand at 358.991 kb on + strand at 358.991 kb on + strand at 358.992 kb on - strand at 358.992 kb on - strand at 358.992 kb on - strand at 358.992 kb on - strand at 359.046 kb on + strand at 359.047 kb on - strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.064 kb on + strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.065 kb on - strand at 359.118 kb on + strand at 359.146 kb on + strand at 359.147 kb on - strand at 359.147 kb on - strand at 359.147 kb on - strand at 359.158 kb on + strand at 359.158 kb on + strand at 359.158 kb on + strand at 359.158 kb on + strand at 359.158 kb on + strand at 359.158 kb on + strand at 359.158 kb on + strand at 359.158 kb on + strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.159 kb on - strand at 359.176 kb on + strand at 359.176 kb on + strand at 359.176 kb on + strand at 359.176 kb on + strand at 359.176 kb on + strand at 359.176 kb on + strand at 359.176 kb on + strand at 359.176 kb on + strand at 359.177 kb on - strand at 359.177 kb on - strand at 359.177 kb on - strand at 359.177 kb on - strand at 359.191 kb on + strand at 359.192 kb on - strand at 359.659 kb on + strand, within Psyr_0337 at 359.659 kb on + strand, within Psyr_0337 at 359.660 kb on - strand, within Psyr_0337 at 359.680 kb on + strand, within Psyr_0337 at 359.680 kb on + strand, within Psyr_0337 at 359.680 kb on + strand, within Psyr_0337 at 359.680 kb on + strand, within Psyr_0337 at 359.680 kb on + strand, within Psyr_0337 at 359.681 kb on - strand, within Psyr_0337 at 359.681 kb on - strand, within Psyr_0337 at 359.681 kb on - strand, within Psyr_0337 at 359.681 kb on - strand, within Psyr_0337 at 359.681 kb on - strand, within Psyr_0337 at 359.714 kb on - strand, within Psyr_0337 at 359.833 kb on + strand, within Psyr_0337 at 359.833 kb on + strand, within Psyr_0337 at 359.834 kb on - strand, within Psyr_0337 at 359.834 kb on - strand, within Psyr_0337 at 359.845 kb on + strand, within Psyr_0337 at 359.909 kb on + strand, within Psyr_0337 at 359.910 kb on - strand, within Psyr_0337 at 359.910 kb on - strand, within Psyr_0337 at 359.910 kb on - strand, within Psyr_0337 at 359.910 kb on - strand, within Psyr_0337
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 355,019 + Psyr_0335 0.30 -1.6 355,019 + Psyr_0335 0.30 +1.4 355,019 + Psyr_0335 0.30 +0.8 355,020 - Psyr_0335 0.30 +0.5 355,020 - Psyr_0335 0.30 -0.1 355,020 - Psyr_0335 0.30 -0.2 355,021 + Psyr_0335 0.30 +4.0 355,021 + Psyr_0335 0.30 -0.1 355,022 - Psyr_0335 0.30 -3.0 355,034 + Psyr_0335 0.31 +0.3 355,034 + Psyr_0335 0.31 +0.1 355,034 + Psyr_0335 0.31 +0.8 355,035 - Psyr_0335 0.31 -1.4 355,035 - Psyr_0335 0.31 -1.1 355,040 + Psyr_0335 0.31 +3.7 355,040 + Psyr_0335 0.31 +2.0 355,040 + Psyr_0335 0.31 -1.4 355,041 - Psyr_0335 0.31 +0.0 355,041 - Psyr_0335 0.31 -1.9 355,058 + Psyr_0335 0.33 -1.2 355,059 - Psyr_0335 0.33 -2.4 355,125 + Psyr_0335 0.38 +0.2 355,125 + Psyr_0335 0.38 +1.0 355,126 - Psyr_0335 0.38 +2.2 355,126 - Psyr_0335 0.38 +0.2 355,388 + Psyr_0335 0.60 +2.1 355,388 + Psyr_0335 0.60 +1.3 355,388 + Psyr_0335 0.60 -2.2 355,389 - Psyr_0335 0.60 +0.5 355,409 + Psyr_0335 0.61 +0.3 355,409 + Psyr_0335 0.61 +0.4 355,409 + Psyr_0335 0.61 +1.7 355,409 + Psyr_0335 0.61 +0.5 355,409 + Psyr_0335 0.61 -2.0 355,409 + Psyr_0335 0.61 +0.0 355,409 + Psyr_0335 0.61 -0.4 355,409 + Psyr_0335 0.61 +0.1 355,410 - Psyr_0335 0.61 +0.8 355,410 - Psyr_0335 0.61 +0.7 355,410 - Psyr_0335 0.61 +0.0 355,410 - Psyr_0335 0.61 -0.5 355,410 - Psyr_0335 0.61 +0.3 355,483 + Psyr_0335 0.67 -0.9 355,534 + Psyr_0335 0.72 +3.0 355,534 + Psyr_0335 0.72 -1.5 355,535 - Psyr_0335 0.72 +2.2 355,535 - Psyr_0335 0.72 +0.2 355,616 + Psyr_0335 0.78 -0.8 355,616 + Psyr_0335 0.78 -1.0 355,616 + Psyr_0335 0.78 +0.0 355,617 - Psyr_0335 0.78 -0.5 355,617 - Psyr_0335 0.78 +1.1 355,617 - Psyr_0335 0.78 +0.6 355,617 - Psyr_0335 0.78 +0.0 355,945 + +0.4 355,946 - +0.9 355,996 + +1.4 355,997 - +0.7 355,997 - +0.3 356,085 - -0.1 356,209 + +0.3 356,379 + Psyr_0336 0.13 +0.2 356,379 + Psyr_0336 0.13 -0.2 356,379 + Psyr_0336 0.13 -0.4 356,379 + Psyr_0336 0.13 +0.4 356,379 + Psyr_0336 0.13 +0.4 356,379 + Psyr_0336 0.13 -0.5 356,379 + Psyr_0336 0.13 +1.4 356,380 - Psyr_0336 0.13 -0.3 356,435 - Psyr_0336 0.15 -0.9 356,473 + Psyr_0336 0.16 +0.2 356,473 + Psyr_0336 0.16 -0.1 356,473 + Psyr_0336 0.16 -0.0 356,473 + Psyr_0336 0.16 -1.2 356,473 + Psyr_0336 0.16 +0.0 356,473 + Psyr_0336 0.16 -3.7 356,474 - Psyr_0336 0.16 +1.5 356,474 - Psyr_0336 0.16 -0.1 356,474 - Psyr_0336 0.16 +0.7 356,608 + Psyr_0336 0.21 +1.7 356,608 + Psyr_0336 0.21 -0.7 356,608 + Psyr_0336 0.21 -0.2 356,609 - Psyr_0336 0.21 +1.4 356,609 - Psyr_0336 0.21 +1.3 356,609 - Psyr_0336 0.21 +3.3 356,609 - Psyr_0336 0.21 -0.9 357,142 + Psyr_0336 0.38 -0.1 357,142 + Psyr_0336 0.38 +0.1 357,142 + Psyr_0336 0.38 -0.3 357,142 + Psyr_0336 0.38 +0.1 357,142 + Psyr_0336 0.38 +0.8 357,143 - Psyr_0336 0.38 -0.1 357,143 - Psyr_0336 0.38 -0.2 357,143 - Psyr_0336 0.38 +0.4 357,143 - Psyr_0336 0.38 -0.6 357,143 - Psyr_0336 0.38 -0.1 357,143 - Psyr_0336 0.38 +0.5 357,282 - Psyr_0336 0.43 -2.1 357,282 - Psyr_0336 0.43 +0.3 357,350 - Psyr_0336 0.45 +1.6 357,350 - Psyr_0336 0.45 -0.7 357,663 + Psyr_0336 0.56 +0.2 357,754 + Psyr_0336 0.59 -0.2 357,754 + Psyr_0336 0.59 +0.2 357,755 - Psyr_0336 0.59 +0.2 357,922 + Psyr_0336 0.64 -0.9 357,922 + Psyr_0336 0.64 +1.7 357,923 - Psyr_0336 0.65 +0.4 357,941 - Psyr_0336 0.65 +1.4 358,108 + Psyr_0336 0.71 -0.1 358,109 - Psyr_0336 0.71 +1.1 358,109 - Psyr_0336 0.71 +1.5 358,126 + Psyr_0336 0.71 +0.9 358,126 + Psyr_0336 0.71 +0.1 358,127 - Psyr_0336 0.71 +0.1 358,127 - Psyr_0336 0.71 +1.8 358,127 - Psyr_0336 0.71 -0.2 358,226 - Psyr_0336 0.75 -0.6 358,300 + Psyr_0336 0.77 -0.3 358,300 + Psyr_0336 0.77 +0.1 358,300 + Psyr_0336 0.77 +1.2 358,300 + Psyr_0336 0.77 +0.1 358,300 + Psyr_0336 0.77 +0.1 358,301 - Psyr_0336 0.77 -0.2 358,432 + Psyr_0336 0.82 -2.5 358,433 - Psyr_0336 0.82 -0.5 358,433 - Psyr_0336 0.82 +0.6 358,433 - Psyr_0336 0.82 -0.6 358,444 + Psyr_0336 0.82 -0.7 358,444 + Psyr_0336 0.82 +1.1 358,445 - Psyr_0336 0.82 +1.7 358,445 - Psyr_0336 0.82 -0.4 358,445 - Psyr_0336 0.82 +0.0 358,582 + Psyr_0336 0.87 +0.7 358,583 - Psyr_0336 0.87 +1.5 358,583 - Psyr_0336 0.87 -0.5 358,583 - Psyr_0336 0.87 +0.7 358,693 + +1.1 358,693 + +0.2 358,727 + -1.1 358,727 + +1.8 358,728 - +0.6 358,757 + +0.2 358,757 + +1.1 358,757 + -0.5 358,757 + +0.6 358,757 + +1.7 358,758 - +2.4 358,758 - +0.7 358,759 + -0.7 358,759 + -0.5 358,759 + -0.2 358,759 + +1.4 358,760 - +2.4 358,760 - -0.7 358,760 - -0.9 358,760 - -0.5 358,760 - -0.5 358,760 - +0.2 358,760 - -0.3 358,760 - -1.8 358,760 - +0.1 358,798 + +0.3 358,798 + +0.3 358,799 - -0.2 358,799 - +0.4 358,991 + -1.4 358,991 + -1.7 358,991 + +0.7 358,991 + +0.7 358,991 + -3.2 358,992 - +0.6 358,992 - -1.4 358,992 - +0.1 358,992 - -0.7 359,046 + -0.3 359,047 - -0.9 359,064 + +1.4 359,064 + +0.3 359,064 + +1.8 359,064 + -1.8 359,064 + -1.3 359,064 + +0.2 359,064 + -0.3 359,064 + +0.1 359,064 + -1.8 359,064 + -1.0 359,065 - +1.4 359,065 - +0.8 359,065 - +1.3 359,065 - +1.4 359,065 - -2.5 359,065 - +0.0 359,065 - -0.5 359,065 - +1.7 359,065 - +0.6 359,065 - -2.5 359,065 - -0.7 359,065 - +0.3 359,065 - +0.4 359,065 - -0.7 359,065 - +1.7 359,065 - +0.4 359,065 - +2.8 359,065 - +0.7 359,065 - +0.2 359,065 - +0.5 359,118 + +0.1 359,146 + -0.1 359,147 - -0.4 359,147 - +0.6 359,147 - +0.3 359,158 + +1.4 359,158 + +2.1 359,158 + +0.1 359,158 + +0.2 359,158 + +0.1 359,158 + -1.4 359,158 + +0.2 359,158 + -0.2 359,159 - -0.6 359,159 - +0.2 359,159 - -0.3 359,159 - +0.6 359,159 - -0.7 359,159 - -0.7 359,159 - -0.5 359,159 - +0.7 359,159 - +0.1 359,176 + +0.2 359,176 + -0.7 359,176 + +2.3 359,176 + -0.3 359,176 + +0.2 359,176 + -0.4 359,176 + -1.1 359,176 + +0.4 359,177 - -0.4 359,177 - -0.9 359,177 - +0.5 359,177 - -0.0 359,191 + -0.5 359,192 - -0.8 359,659 + Psyr_0337 0.39 -1.1 359,659 + Psyr_0337 0.39 -1.5 359,660 - Psyr_0337 0.39 -0.1 359,680 + Psyr_0337 0.41 +0.5 359,680 + Psyr_0337 0.41 +1.1 359,680 + Psyr_0337 0.41 +1.4 359,680 + Psyr_0337 0.41 -0.1 359,680 + Psyr_0337 0.41 -0.4 359,681 - Psyr_0337 0.41 +1.1 359,681 - Psyr_0337 0.41 +0.5 359,681 - Psyr_0337 0.41 +0.2 359,681 - Psyr_0337 0.41 -1.4 359,681 - Psyr_0337 0.41 +1.0 359,714 - Psyr_0337 0.45 -1.9 359,833 + Psyr_0337 0.58 +0.5 359,833 + Psyr_0337 0.58 -0.3 359,834 - Psyr_0337 0.58 -0.1 359,834 - Psyr_0337 0.58 -2.5 359,845 + Psyr_0337 0.60 -0.7 359,909 + Psyr_0337 0.67 -0.6 359,910 - Psyr_0337 0.67 +1.2 359,910 - Psyr_0337 0.67 +0.6 359,910 - Psyr_0337 0.67 -1.1 359,910 - Psyr_0337 0.67 +0.2
Or see this region's nucleotide sequence