Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0293 and Psyr_0294 overlap by 14 nucleotides Psyr_0294 and Psyr_0295 are separated by 593 nucleotides
Psyr_0293: Psyr_0293 - Polyphosphate kinase, at 311,440 to 313,650
_0293
Psyr_0294: Psyr_0294 - Exopolyphosphatase, at 313,637 to 315,217
_0294
Psyr_0295: Psyr_0295 - amino acid ABC transporter ATP-binding protein, PAAT family, at 315,811 to 316,545
_0295
Position (kb) 313
314
315
316 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 312.697 kb on + strand, within Psyr_0293 at 312.856 kb on + strand, within Psyr_0293 at 312.856 kb on + strand, within Psyr_0293 at 312.926 kb on + strand, within Psyr_0293 at 312.926 kb on + strand, within Psyr_0293 at 312.926 kb on + strand, within Psyr_0293 at 312.927 kb on - strand, within Psyr_0293 at 312.927 kb on - strand, within Psyr_0293 at 312.927 kb on - strand, within Psyr_0293 at 312.927 kb on - strand, within Psyr_0293 at 312.927 kb on - strand, within Psyr_0293 at 312.927 kb on - strand, within Psyr_0293 at 312.927 kb on - strand, within Psyr_0293 at 312.927 kb on - strand, within Psyr_0293 at 312.927 kb on - strand, within Psyr_0293 at 312.955 kb on + strand, within Psyr_0293 at 312.955 kb on + strand, within Psyr_0293 at 312.956 kb on - strand, within Psyr_0293 at 312.956 kb on - strand, within Psyr_0293 at 312.956 kb on - strand, within Psyr_0293 at 312.979 kb on + strand, within Psyr_0293 at 312.979 kb on + strand, within Psyr_0293 at 312.979 kb on + strand, within Psyr_0293 at 312.979 kb on + strand, within Psyr_0293 at 312.979 kb on + strand, within Psyr_0293 at 312.980 kb on - strand, within Psyr_0293 at 312.980 kb on - strand, within Psyr_0293 at 312.980 kb on - strand, within Psyr_0293 at 312.980 kb on - strand, within Psyr_0293 at 312.980 kb on - strand, within Psyr_0293 at 312.989 kb on - strand, within Psyr_0293 at 313.225 kb on + strand, within Psyr_0293 at 313.225 kb on + strand, within Psyr_0293 at 313.225 kb on + strand, within Psyr_0293 at 313.225 kb on + strand, within Psyr_0293 at 313.225 kb on + strand, within Psyr_0293 at 313.226 kb on - strand, within Psyr_0293 at 313.226 kb on - strand, within Psyr_0293 at 313.226 kb on - strand, within Psyr_0293 at 313.226 kb on - strand, within Psyr_0293 at 313.366 kb on + strand, within Psyr_0293 at 313.366 kb on + strand, within Psyr_0293 at 313.366 kb on + strand, within Psyr_0293 at 313.366 kb on + strand, within Psyr_0293 at 313.366 kb on + strand, within Psyr_0293 at 313.366 kb on + strand, within Psyr_0293 at 313.366 kb on + strand, within Psyr_0293 at 313.366 kb on + strand, within Psyr_0293 at 313.367 kb on - strand, within Psyr_0293 at 313.367 kb on - strand, within Psyr_0293 at 313.367 kb on - strand, within Psyr_0293 at 313.367 kb on - strand, within Psyr_0293 at 313.507 kb on + strand at 313.508 kb on - strand at 313.508 kb on - strand at 313.643 kb on + strand at 313.643 kb on + strand at 313.900 kb on + strand, within Psyr_0294 at 313.984 kb on - strand, within Psyr_0294 at 314.008 kb on - strand, within Psyr_0294 at 314.067 kb on + strand, within Psyr_0294 at 314.164 kb on - strand, within Psyr_0294 at 314.198 kb on + strand, within Psyr_0294 at 314.198 kb on + strand, within Psyr_0294 at 314.198 kb on + strand, within Psyr_0294 at 314.198 kb on + strand, within Psyr_0294 at 314.199 kb on - strand, within Psyr_0294 at 314.199 kb on - strand, within Psyr_0294 at 314.199 kb on - strand, within Psyr_0294 at 314.199 kb on - strand, within Psyr_0294 at 314.233 kb on - strand, within Psyr_0294 at 314.568 kb on + strand, within Psyr_0294 at 314.569 kb on - strand, within Psyr_0294 at 314.569 kb on - strand, within Psyr_0294 at 314.580 kb on + strand, within Psyr_0294 at 314.614 kb on - strand, within Psyr_0294 at 314.766 kb on + strand, within Psyr_0294 at 314.767 kb on - strand, within Psyr_0294 at 314.767 kb on - strand, within Psyr_0294 at 314.767 kb on - strand, within Psyr_0294 at 315.070 kb on + strand at 315.070 kb on + strand at 315.071 kb on - strand at 315.071 kb on - strand at 315.071 kb on - strand at 315.071 kb on - strand at 315.071 kb on - strand at 315.071 kb on - strand at 315.232 kb on - strand at 315.235 kb on - strand at 315.235 kb on - strand at 315.251 kb on + strand at 315.325 kb on + strand at 315.325 kb on + strand at 315.349 kb on + strand at 315.367 kb on + strand at 315.367 kb on + strand at 315.367 kb on + strand at 315.367 kb on + strand at 315.367 kb on + strand at 315.370 kb on + strand at 315.370 kb on + strand at 315.370 kb on + strand at 315.370 kb on + strand at 315.370 kb on + strand at 315.370 kb on + strand at 315.370 kb on + strand at 315.370 kb on + strand at 315.370 kb on + strand at 315.370 kb on + strand at 315.371 kb on - strand at 315.371 kb on - strand at 315.371 kb on - strand at 315.371 kb on - strand at 315.371 kb on - strand at 315.371 kb on - strand at 315.371 kb on - strand at 315.371 kb on - strand at 315.428 kb on + strand at 315.428 kb on + strand at 315.428 kb on + strand at 315.429 kb on - strand at 315.429 kb on - strand at 315.429 kb on - strand at 315.429 kb on - strand at 315.429 kb on - strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.502 kb on + strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.503 kb on - strand at 315.557 kb on + strand at 315.558 kb on - strand at 315.558 kb on - strand at 315.558 kb on - strand at 315.592 kb on - strand at 315.592 kb on - strand at 315.592 kb on - strand at 315.592 kb on - strand at 315.592 kb on - strand at 315.649 kb on + strand at 315.756 kb on + strand at 315.756 kb on + strand at 315.756 kb on + strand at 315.756 kb on + strand at 315.756 kb on + strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.757 kb on - strand at 315.758 kb on + strand at 315.759 kb on - strand at 316.069 kb on + strand, within Psyr_0295 at 316.069 kb on + strand, within Psyr_0295 at 316.069 kb on + strand, within Psyr_0295 at 316.070 kb on - strand, within Psyr_0295
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 312,697 + Psyr_0293 0.57 +0.6 312,856 + Psyr_0293 0.64 -0.9 312,856 + Psyr_0293 0.64 +0.4 312,926 + Psyr_0293 0.67 +1.3 312,926 + Psyr_0293 0.67 -1.1 312,926 + Psyr_0293 0.67 -1.7 312,927 - Psyr_0293 0.67 -1.3 312,927 - Psyr_0293 0.67 +0.5 312,927 - Psyr_0293 0.67 +0.0 312,927 - Psyr_0293 0.67 -0.2 312,927 - Psyr_0293 0.67 -0.4 312,927 - Psyr_0293 0.67 -0.7 312,927 - Psyr_0293 0.67 -1.2 312,927 - Psyr_0293 0.67 -2.3 312,927 - Psyr_0293 0.67 +0.4 312,955 + Psyr_0293 0.69 -0.0 312,955 + Psyr_0293 0.69 +0.6 312,956 - Psyr_0293 0.69 -1.0 312,956 - Psyr_0293 0.69 +0.9 312,956 - Psyr_0293 0.69 +0.2 312,979 + Psyr_0293 0.70 +0.1 312,979 + Psyr_0293 0.70 +0.9 312,979 + Psyr_0293 0.70 -2.6 312,979 + Psyr_0293 0.70 -0.6 312,979 + Psyr_0293 0.70 -0.3 312,980 - Psyr_0293 0.70 +1.6 312,980 - Psyr_0293 0.70 +1.1 312,980 - Psyr_0293 0.70 -0.2 312,980 - Psyr_0293 0.70 -0.6 312,980 - Psyr_0293 0.70 +0.0 312,989 - Psyr_0293 0.70 -0.4 313,225 + Psyr_0293 0.81 +2.7 313,225 + Psyr_0293 0.81 +0.9 313,225 + Psyr_0293 0.81 +1.3 313,225 + Psyr_0293 0.81 +0.4 313,225 + Psyr_0293 0.81 -1.2 313,226 - Psyr_0293 0.81 +0.2 313,226 - Psyr_0293 0.81 -0.2 313,226 - Psyr_0293 0.81 -0.9 313,226 - Psyr_0293 0.81 +0.1 313,366 + Psyr_0293 0.87 -0.3 313,366 + Psyr_0293 0.87 +0.4 313,366 + Psyr_0293 0.87 -0.0 313,366 + Psyr_0293 0.87 +0.4 313,366 + Psyr_0293 0.87 +0.7 313,366 + Psyr_0293 0.87 +0.0 313,366 + Psyr_0293 0.87 +0.2 313,366 + Psyr_0293 0.87 +0.8 313,367 - Psyr_0293 0.87 -0.9 313,367 - Psyr_0293 0.87 +1.2 313,367 - Psyr_0293 0.87 +0.1 313,367 - Psyr_0293 0.87 +0.3 313,507 + +3.0 313,508 - +0.3 313,508 - -0.5 313,643 + -1.4 313,643 + +0.0 313,900 + Psyr_0294 0.17 -0.2 313,984 - Psyr_0294 0.22 -0.1 314,008 - Psyr_0294 0.23 -0.2 314,067 + Psyr_0294 0.27 -0.7 314,164 - Psyr_0294 0.33 +0.3 314,198 + Psyr_0294 0.35 -0.2 314,198 + Psyr_0294 0.35 +1.0 314,198 + Psyr_0294 0.35 +0.6 314,198 + Psyr_0294 0.35 +2.1 314,199 - Psyr_0294 0.36 -0.4 314,199 - Psyr_0294 0.36 +1.3 314,199 - Psyr_0294 0.36 +3.0 314,199 - Psyr_0294 0.36 +1.0 314,233 - Psyr_0294 0.38 -0.4 314,568 + Psyr_0294 0.59 +0.5 314,569 - Psyr_0294 0.59 +0.7 314,569 - Psyr_0294 0.59 +1.1 314,580 + Psyr_0294 0.60 -0.8 314,614 - Psyr_0294 0.62 +0.8 314,766 + Psyr_0294 0.71 +2.4 314,767 - Psyr_0294 0.71 +0.4 314,767 - Psyr_0294 0.71 -0.6 314,767 - Psyr_0294 0.71 +2.7 315,070 + -1.3 315,070 + +0.6 315,071 - -2.1 315,071 - +3.0 315,071 - +0.3 315,071 - +0.2 315,071 - -0.3 315,071 - +1.4 315,232 - +0.4 315,235 - -0.2 315,235 - +0.1 315,251 + +1.5 315,325 + -0.5 315,325 + -0.2 315,349 + +0.4 315,367 + -1.0 315,367 + +1.4 315,367 + -0.1 315,367 + +0.2 315,367 + -1.1 315,370 + -0.0 315,370 + -0.2 315,370 + +0.6 315,370 + +0.2 315,370 + +0.8 315,370 + -1.4 315,370 + -0.2 315,370 + +0.1 315,370 + -0.3 315,370 + -0.5 315,371 - +0.4 315,371 - +0.4 315,371 - -1.0 315,371 - +1.1 315,371 - -1.2 315,371 - +0.2 315,371 - -1.0 315,371 - -1.8 315,428 + +2.0 315,428 + +2.5 315,428 + -0.6 315,429 - -1.0 315,429 - -0.8 315,429 - +0.5 315,429 - +0.1 315,429 - +0.4 315,502 + -0.2 315,502 + +1.1 315,502 + +0.8 315,502 + -0.5 315,502 + +1.3 315,502 + -0.1 315,502 + +0.7 315,502 + +0.1 315,502 + -1.0 315,502 + +0.2 315,502 + +0.6 315,502 + +0.1 315,502 + -0.4 315,503 - -0.5 315,503 - -0.6 315,503 - -0.4 315,503 - -0.3 315,503 - -0.0 315,503 - +0.0 315,503 - -2.4 315,503 - -2.3 315,503 - +1.5 315,503 - +1.6 315,503 - +1.8 315,503 - +1.4 315,503 - -0.4 315,503 - +1.2 315,503 - -1.6 315,503 - +0.7 315,503 - -0.4 315,503 - -0.0 315,557 + +3.2 315,558 - -0.6 315,558 - -0.2 315,558 - +1.1 315,592 - -0.7 315,592 - -0.4 315,592 - +4.8 315,592 - -1.5 315,592 - -1.6 315,649 + +0.8 315,756 + -0.2 315,756 + +0.8 315,756 + -0.4 315,756 + -2.4 315,756 + +1.6 315,757 - -1.2 315,757 - -2.6 315,757 - +0.2 315,757 - +1.5 315,757 - +0.8 315,757 - -0.5 315,757 - -0.0 315,757 - -0.0 315,757 - +0.0 315,757 - -0.9 315,758 + -0.4 315,759 - +0.9 316,069 + Psyr_0295 0.35 -0.7 316,069 + Psyr_0295 0.35 -0.5 316,069 + Psyr_0295 0.35 -0.6 316,070 - Psyr_0295 0.35 +0.0
Or see this region's nucleotide sequence