Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0198 and Psyr_0199 are separated by 296 nucleotides Psyr_0199 and Psyr_0200 are separated by 62 nucleotides Psyr_0200 and Psyr_0201 are separated by 86 nucleotides
Psyr_0198: Psyr_0198 - Citrate transporter, at 211,908 to 213,215
_0198
Psyr_0199: Psyr_0199 - Glutathione-dependent formaldehyde-activating, GFA, at 213,512 to 213,913
_0199
Psyr_0200: Psyr_0200 - conserved hypothetical protein, at 213,976 to 215,373
_0200
Psyr_0201: Psyr_0201 - ATP-dependent DNA helicase RecG, at 215,460 to 217,535
_0201
Position (kb) 213
214
215
216 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 213.010 kb on + strand, within Psyr_0198 at 213.010 kb on + strand, within Psyr_0198 at 213.059 kb on + strand, within Psyr_0198 at 213.060 kb on - strand, within Psyr_0198 at 213.060 kb on - strand, within Psyr_0198 at 213.172 kb on + strand at 213.172 kb on + strand at 213.172 kb on + strand at 213.172 kb on + strand at 213.172 kb on + strand at 213.172 kb on + strand at 213.173 kb on - strand at 213.173 kb on - strand at 213.173 kb on - strand at 213.173 kb on - strand at 213.173 kb on - strand at 213.185 kb on + strand at 213.232 kb on + strand at 213.232 kb on + strand at 213.232 kb on + strand at 213.232 kb on + strand at 213.233 kb on - strand at 213.233 kb on - strand at 213.233 kb on - strand at 213.233 kb on - strand at 213.235 kb on + strand at 213.235 kb on + strand at 213.236 kb on - strand at 213.236 kb on - strand at 213.281 kb on - strand at 213.343 kb on + strand at 213.343 kb on + strand at 213.344 kb on - strand at 213.344 kb on - strand at 213.352 kb on + strand at 213.352 kb on + strand at 213.352 kb on + strand at 213.353 kb on - strand at 213.353 kb on - strand at 213.353 kb on - strand at 213.422 kb on + strand at 213.423 kb on - strand at 213.423 kb on - strand at 213.423 kb on - strand at 213.423 kb on - strand at 213.423 kb on - strand at 213.472 kb on - strand at 213.696 kb on - strand, within Psyr_0199 at 213.722 kb on + strand, within Psyr_0199 at 213.722 kb on + strand, within Psyr_0199 at 213.847 kb on - strand, within Psyr_0199 at 213.959 kb on + strand at 213.959 kb on + strand at 213.959 kb on + strand at 213.959 kb on + strand at 213.959 kb on + strand at 213.959 kb on + strand at 213.959 kb on + strand at 213.960 kb on - strand at 213.960 kb on - strand at 213.960 kb on - strand at 213.960 kb on - strand at 213.960 kb on - strand at 213.960 kb on - strand at 213.960 kb on - strand at 213.964 kb on + strand at 213.964 kb on + strand at 213.964 kb on + strand at 213.964 kb on + strand at 213.964 kb on + strand at 213.964 kb on + strand at 213.965 kb on - strand at 213.965 kb on - strand at 213.965 kb on - strand at 213.965 kb on - strand at 213.978 kb on - strand at 214.151 kb on + strand, within Psyr_0200 at 214.151 kb on + strand, within Psyr_0200 at 214.151 kb on + strand, within Psyr_0200 at 214.152 kb on - strand, within Psyr_0200 at 214.167 kb on - strand, within Psyr_0200 at 214.187 kb on + strand, within Psyr_0200 at 214.187 kb on + strand, within Psyr_0200 at 214.187 kb on + strand, within Psyr_0200 at 214.187 kb on + strand, within Psyr_0200 at 214.188 kb on - strand, within Psyr_0200 at 214.188 kb on - strand, within Psyr_0200 at 214.188 kb on - strand, within Psyr_0200 at 214.244 kb on + strand, within Psyr_0200 at 214.418 kb on + strand, within Psyr_0200 at 214.418 kb on + strand, within Psyr_0200 at 214.418 kb on + strand, within Psyr_0200 at 214.490 kb on + strand, within Psyr_0200 at 214.490 kb on + strand, within Psyr_0200 at 214.490 kb on + strand, within Psyr_0200 at 214.490 kb on + strand, within Psyr_0200 at 214.490 kb on + strand, within Psyr_0200 at 214.490 kb on + strand, within Psyr_0200 at 214.491 kb on - strand, within Psyr_0200 at 214.491 kb on - strand, within Psyr_0200 at 214.491 kb on - strand, within Psyr_0200 at 214.491 kb on - strand, within Psyr_0200 at 214.508 kb on + strand, within Psyr_0200 at 214.603 kb on + strand, within Psyr_0200 at 214.652 kb on + strand, within Psyr_0200 at 214.655 kb on + strand, within Psyr_0200 at 214.656 kb on - strand, within Psyr_0200 at 215.006 kb on - strand, within Psyr_0200 at 215.006 kb on - strand, within Psyr_0200 at 215.006 kb on - strand, within Psyr_0200 at 215.083 kb on + strand, within Psyr_0200 at 215.084 kb on - strand, within Psyr_0200 at 215.205 kb on + strand, within Psyr_0200 at 215.206 kb on - strand, within Psyr_0200 at 215.206 kb on - strand, within Psyr_0200 at 215.291 kb on + strand at 215.291 kb on + strand at 215.291 kb on + strand at 215.292 kb on - strand at 215.292 kb on - strand at 215.292 kb on - strand at 215.378 kb on + strand at 215.378 kb on + strand at 215.378 kb on + strand at 215.378 kb on + strand at 215.378 kb on + strand at 215.378 kb on + strand at 215.378 kb on + strand at 215.378 kb on + strand at 215.378 kb on + strand at 215.378 kb on + strand at 215.378 kb on + strand at 215.378 kb on + strand at 215.378 kb on + strand at 215.378 kb on + strand at 215.378 kb on + strand at 215.378 kb on + strand at 215.379 kb on - strand at 215.379 kb on - strand at 215.379 kb on - strand at 215.379 kb on - strand at 215.379 kb on - strand at 215.379 kb on - strand at 215.379 kb on - strand at 215.379 kb on - strand at 215.379 kb on - strand at 215.379 kb on - strand at 215.379 kb on - strand at 215.379 kb on - strand at 215.379 kb on - strand at 215.379 kb on - strand at 215.406 kb on + strand at 215.406 kb on + strand at 215.406 kb on + strand at 215.407 kb on - strand at 215.407 kb on - strand at 215.407 kb on - strand at 215.407 kb on - strand at 215.408 kb on + strand at 215.409 kb on - strand at 215.451 kb on + strand at 215.451 kb on + strand at 215.451 kb on + strand at 215.451 kb on + strand at 215.452 kb on - strand at 215.452 kb on - strand at 215.452 kb on - strand at 215.452 kb on - strand at 215.452 kb on - strand at 215.452 kb on - strand at 216.019 kb on + strand, within Psyr_0201 at 216.019 kb on + strand, within Psyr_0201 at 216.019 kb on + strand, within Psyr_0201 at 216.019 kb on + strand, within Psyr_0201 at 216.019 kb on + strand, within Psyr_0201 at 216.020 kb on - strand, within Psyr_0201 at 216.020 kb on - strand, within Psyr_0201 at 216.020 kb on - strand, within Psyr_0201
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 213,010 + Psyr_0198 0.84 +0.8 213,010 + Psyr_0198 0.84 +0.6 213,059 + Psyr_0198 0.88 +0.6 213,060 - Psyr_0198 0.88 -0.1 213,060 - Psyr_0198 0.88 -1.6 213,172 + +0.5 213,172 + -1.1 213,172 + -0.0 213,172 + +2.4 213,172 + -0.8 213,172 + -0.1 213,173 - -0.6 213,173 - +3.0 213,173 - +1.8 213,173 - +1.0 213,173 - +0.8 213,185 + +0.3 213,232 + -0.0 213,232 + -0.1 213,232 + +1.4 213,232 + +0.6 213,233 - +0.1 213,233 - -0.5 213,233 - -0.3 213,233 - -0.5 213,235 + +1.7 213,235 + -1.9 213,236 - -0.5 213,236 - +0.0 213,281 - -0.6 213,343 + -0.6 213,343 + +0.8 213,344 - +0.3 213,344 - -0.2 213,352 + +0.3 213,352 + -1.1 213,352 + -1.1 213,353 - -0.6 213,353 - -0.0 213,353 - -0.1 213,422 + +0.5 213,423 - -0.5 213,423 - -0.8 213,423 - +0.2 213,423 - -1.1 213,423 - +1.8 213,472 - -1.2 213,696 - Psyr_0199 0.46 -0.7 213,722 + Psyr_0199 0.52 -0.1 213,722 + Psyr_0199 0.52 -0.9 213,847 - Psyr_0199 0.83 -0.3 213,959 + +1.1 213,959 + +0.2 213,959 + -0.4 213,959 + +1.9 213,959 + -2.3 213,959 + +1.3 213,959 + +1.1 213,960 - +0.2 213,960 - +0.9 213,960 - -0.6 213,960 - -0.1 213,960 - +2.0 213,960 - +0.9 213,960 - +0.1 213,964 + +0.4 213,964 + -0.0 213,964 + +0.7 213,964 + -0.1 213,964 + -0.5 213,964 + -0.3 213,965 - +0.7 213,965 - +0.8 213,965 - +0.9 213,965 - -0.2 213,978 - -1.6 214,151 + Psyr_0200 0.13 +1.3 214,151 + Psyr_0200 0.13 +2.3 214,151 + Psyr_0200 0.13 -0.7 214,152 - Psyr_0200 0.13 -0.3 214,167 - Psyr_0200 0.14 +1.2 214,187 + Psyr_0200 0.15 +1.8 214,187 + Psyr_0200 0.15 +0.2 214,187 + Psyr_0200 0.15 +3.9 214,187 + Psyr_0200 0.15 +0.3 214,188 - Psyr_0200 0.15 +0.9 214,188 - Psyr_0200 0.15 -0.4 214,188 - Psyr_0200 0.15 +2.0 214,244 + Psyr_0200 0.19 +1.2 214,418 + Psyr_0200 0.32 +2.4 214,418 + Psyr_0200 0.32 +1.0 214,418 + Psyr_0200 0.32 -0.0 214,490 + Psyr_0200 0.37 -0.2 214,490 + Psyr_0200 0.37 +0.7 214,490 + Psyr_0200 0.37 +0.7 214,490 + Psyr_0200 0.37 +0.8 214,490 + Psyr_0200 0.37 +2.4 214,490 + Psyr_0200 0.37 +0.7 214,491 - Psyr_0200 0.37 -0.1 214,491 - Psyr_0200 0.37 +0.5 214,491 - Psyr_0200 0.37 -1.8 214,491 - Psyr_0200 0.37 +1.1 214,508 + Psyr_0200 0.38 +1.2 214,603 + Psyr_0200 0.45 +1.2 214,652 + Psyr_0200 0.48 +2.3 214,655 + Psyr_0200 0.49 -0.5 214,656 - Psyr_0200 0.49 +0.6 215,006 - Psyr_0200 0.74 +0.9 215,006 - Psyr_0200 0.74 +0.6 215,006 - Psyr_0200 0.74 +0.1 215,083 + Psyr_0200 0.79 +0.2 215,084 - Psyr_0200 0.79 +0.2 215,205 + Psyr_0200 0.88 +2.1 215,206 - Psyr_0200 0.88 +1.1 215,206 - Psyr_0200 0.88 +1.3 215,291 + +3.9 215,291 + +2.3 215,291 + +1.3 215,292 - -0.4 215,292 - +1.2 215,292 - +0.6 215,378 + -1.9 215,378 + +0.3 215,378 + +0.6 215,378 + +1.7 215,378 + +1.8 215,378 + +1.1 215,378 + +0.2 215,378 + -0.1 215,378 + +0.6 215,378 + +2.1 215,378 + +1.5 215,378 + +2.0 215,378 + +2.4 215,378 + +0.4 215,378 + +0.0 215,378 + +2.0 215,379 - +2.4 215,379 - -0.5 215,379 - +1.4 215,379 - +0.6 215,379 - +0.1 215,379 - +1.4 215,379 - -1.4 215,379 - -0.1 215,379 - +0.2 215,379 - +0.2 215,379 - -0.2 215,379 - -1.6 215,379 - +0.0 215,379 - +1.4 215,406 + -0.1 215,406 + +0.9 215,406 + +0.8 215,407 - -0.7 215,407 - +0.5 215,407 - +1.9 215,407 - +0.5 215,408 + +0.7 215,409 - +0.4 215,451 + +0.1 215,451 + +0.2 215,451 + -0.5 215,451 + -1.3 215,452 - +2.0 215,452 - -0.8 215,452 - -0.8 215,452 - -1.9 215,452 - +0.2 215,452 - +0.5 216,019 + Psyr_0201 0.27 +1.1 216,019 + Psyr_0201 0.27 +2.2 216,019 + Psyr_0201 0.27 -2.4 216,019 + Psyr_0201 0.27 +1.9 216,019 + Psyr_0201 0.27 +0.4 216,020 - Psyr_0201 0.27 +0.4 216,020 - Psyr_0201 0.27 +0.4 216,020 - Psyr_0201 0.27 -0.1
Or see this region's nucleotide sequence