Experiment: KB with Ginkgolide A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0163 and Psyr_0164 are separated by 9 nucleotides Psyr_0164 and Psyr_0165 are separated by 17 nucleotides Psyr_0165 and Psyr_0166 are separated by 563 nucleotides
Psyr_0163: Psyr_0163 - conserved hypothetical protein, at 177,649 to 178,356
_0163
Psyr_0164: Psyr_0164 - conserved hypothetical protein, at 178,366 to 179,082
_0164
Psyr_0165: Psyr_0165 - GCN5-related N-acetyltransferase, at 179,100 to 179,543
_0165
Psyr_0166: Psyr_0166 - hypothetical protein, at 180,107 to 181,417
_0166
Position (kb) 179
180 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 178.143 kb on + strand, within Psyr_0163 at 178.162 kb on + strand, within Psyr_0163 at 178.162 kb on + strand, within Psyr_0163 at 178.163 kb on - strand, within Psyr_0163 at 178.163 kb on - strand, within Psyr_0163 at 178.163 kb on - strand, within Psyr_0163 at 178.174 kb on + strand, within Psyr_0163 at 178.175 kb on - strand, within Psyr_0163 at 178.271 kb on - strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.365 kb on + strand at 178.365 kb on + strand at 178.365 kb on + strand at 178.365 kb on + strand at 178.365 kb on + strand at 178.365 kb on + strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.380 kb on + strand at 178.380 kb on + strand at 178.381 kb on - strand at 178.381 kb on - strand at 178.381 kb on - strand at 178.381 kb on - strand at 178.475 kb on + strand, within Psyr_0164 at 178.475 kb on + strand, within Psyr_0164 at 178.476 kb on - strand, within Psyr_0164 at 178.476 kb on - strand, within Psyr_0164 at 178.476 kb on - strand, within Psyr_0164 at 178.476 kb on - strand, within Psyr_0164 at 178.476 kb on - strand, within Psyr_0164 at 178.525 kb on + strand, within Psyr_0164 at 178.525 kb on + strand, within Psyr_0164 at 178.525 kb on + strand, within Psyr_0164 at 178.525 kb on + strand, within Psyr_0164 at 178.526 kb on - strand, within Psyr_0164 at 178.526 kb on - strand, within Psyr_0164 at 178.526 kb on - strand, within Psyr_0164 at 178.526 kb on - strand, within Psyr_0164 at 178.777 kb on + strand, within Psyr_0164 at 178.777 kb on + strand, within Psyr_0164 at 178.777 kb on + strand, within Psyr_0164 at 178.777 kb on + strand, within Psyr_0164 at 178.777 kb on + strand, within Psyr_0164 at 178.777 kb on + strand, within Psyr_0164 at 178.777 kb on + strand, within Psyr_0164 at 178.778 kb on - strand, within Psyr_0164 at 178.778 kb on - strand, within Psyr_0164 at 178.778 kb on - strand, within Psyr_0164 at 178.778 kb on - strand, within Psyr_0164 at 178.778 kb on - strand, within Psyr_0164 at 178.778 kb on - strand, within Psyr_0164 at 178.778 kb on - strand, within Psyr_0164 at 178.789 kb on + strand, within Psyr_0164 at 178.789 kb on + strand, within Psyr_0164 at 178.789 kb on + strand, within Psyr_0164 at 178.806 kb on + strand, within Psyr_0164 at 178.806 kb on + strand, within Psyr_0164 at 178.807 kb on - strand, within Psyr_0164 at 178.807 kb on - strand, within Psyr_0164 at 178.807 kb on - strand, within Psyr_0164 at 178.807 kb on - strand, within Psyr_0164 at 178.807 kb on - strand, within Psyr_0164 at 178.808 kb on + strand, within Psyr_0164 at 178.822 kb on + strand, within Psyr_0164 at 178.822 kb on + strand, within Psyr_0164 at 178.822 kb on + strand, within Psyr_0164 at 178.823 kb on - strand, within Psyr_0164 at 178.823 kb on - strand, within Psyr_0164 at 178.823 kb on - strand, within Psyr_0164 at 178.823 kb on - strand, within Psyr_0164 at 178.878 kb on + strand, within Psyr_0164 at 178.878 kb on + strand, within Psyr_0164 at 178.878 kb on + strand, within Psyr_0164 at 178.878 kb on + strand, within Psyr_0164 at 178.878 kb on + strand, within Psyr_0164 at 178.879 kb on - strand, within Psyr_0164 at 178.879 kb on - strand, within Psyr_0164 at 178.879 kb on - strand, within Psyr_0164 at 178.882 kb on + strand, within Psyr_0164 at 178.882 kb on + strand, within Psyr_0164 at 178.883 kb on - strand, within Psyr_0164 at 178.883 kb on - strand, within Psyr_0164 at 178.931 kb on + strand, within Psyr_0164 at 178.931 kb on + strand, within Psyr_0164 at 178.931 kb on + strand, within Psyr_0164 at 178.931 kb on + strand, within Psyr_0164 at 178.931 kb on + strand, within Psyr_0164 at 178.931 kb on + strand, within Psyr_0164 at 178.932 kb on - strand, within Psyr_0164 at 178.939 kb on - strand, within Psyr_0164 at 178.939 kb on - strand, within Psyr_0164 at 178.993 kb on + strand, within Psyr_0164 at 178.994 kb on - strand, within Psyr_0164 at 178.994 kb on - strand, within Psyr_0164 at 178.994 kb on - strand, within Psyr_0164 at 178.994 kb on - strand, within Psyr_0164 at 179.102 kb on - strand at 179.128 kb on + strand at 179.128 kb on + strand at 179.128 kb on + strand at 179.128 kb on + strand at 179.128 kb on + strand at 179.128 kb on + strand at 179.128 kb on + strand at 179.128 kb on + strand at 179.128 kb on + strand at 179.128 kb on + strand at 179.128 kb on + strand at 179.129 kb on - strand at 179.129 kb on - strand at 179.129 kb on - strand at 179.129 kb on - strand at 179.129 kb on - strand at 179.129 kb on - strand at 179.129 kb on - strand at 179.129 kb on - strand at 179.209 kb on + strand, within Psyr_0165 at 179.253 kb on + strand, within Psyr_0165 at 179.253 kb on + strand, within Psyr_0165 at 179.253 kb on + strand, within Psyr_0165 at 179.253 kb on + strand, within Psyr_0165 at 179.253 kb on + strand, within Psyr_0165 at 179.254 kb on - strand, within Psyr_0165 at 179.254 kb on - strand, within Psyr_0165 at 179.399 kb on + strand, within Psyr_0165 at 179.424 kb on + strand, within Psyr_0165 at 179.425 kb on - strand, within Psyr_0165 at 179.458 kb on + strand, within Psyr_0165 at 179.733 kb on - strand at 179.769 kb on + strand at 179.769 kb on + strand at 179.862 kb on + strand at 179.862 kb on + strand at 179.862 kb on + strand at 179.862 kb on + strand at 179.863 kb on - strand at 179.863 kb on - strand at 179.866 kb on + strand at 179.866 kb on + strand at 179.866 kb on + strand at 179.867 kb on - strand at 179.867 kb on - strand at 179.877 kb on + strand at 179.927 kb on - strand at 180.013 kb on + strand at 180.014 kb on - strand at 180.065 kb on + strand at 180.065 kb on + strand at 180.065 kb on + strand at 180.065 kb on + strand at 180.066 kb on - strand at 180.066 kb on - strand at 180.066 kb on - strand at 180.076 kb on + strand at 180.077 kb on - strand at 180.077 kb on - strand at 180.140 kb on + strand at 180.140 kb on + strand at 180.140 kb on + strand at 180.141 kb on - strand at 180.141 kb on - strand at 180.141 kb on - strand at 180.175 kb on - strand at 180.195 kb on + strand at 180.237 kb on - strand at 180.268 kb on - strand, within Psyr_0166 at 180.399 kb on + strand, within Psyr_0166 at 180.418 kb on + strand, within Psyr_0166 at 180.473 kb on - strand, within Psyr_0166 at 180.529 kb on + strand, within Psyr_0166 at 180.529 kb on + strand, within Psyr_0166 at 180.533 kb on + strand, within Psyr_0166 at 180.533 kb on + strand, within Psyr_0166 at 180.534 kb on - strand, within Psyr_0166 at 180.534 kb on - strand, within Psyr_0166 at 180.534 kb on - strand, within Psyr_0166 at 180.534 kb on - strand, within Psyr_0166 at 180.534 kb on - strand, within Psyr_0166 at 180.534 kb on - strand, within Psyr_0166 at 180.534 kb on - strand, within Psyr_0166
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM remove 178,143 + Psyr_0163 0.70 +2.7 178,162 + Psyr_0163 0.72 -0.1 178,162 + Psyr_0163 0.72 +3.8 178,163 - Psyr_0163 0.73 -0.1 178,163 - Psyr_0163 0.73 -1.3 178,163 - Psyr_0163 0.73 +1.3 178,174 + Psyr_0163 0.74 -0.3 178,175 - Psyr_0163 0.74 +1.2 178,271 - Psyr_0163 0.88 -1.2 178,284 + Psyr_0163 0.90 -1.0 178,284 + Psyr_0163 0.90 -1.2 178,284 + Psyr_0163 0.90 -0.6 178,284 + Psyr_0163 0.90 -0.9 178,284 + Psyr_0163 0.90 -1.0 178,284 + Psyr_0163 0.90 +0.1 178,284 + Psyr_0163 0.90 -0.4 178,284 + Psyr_0163 0.90 -0.1 178,285 - Psyr_0163 0.90 -0.9 178,285 - Psyr_0163 0.90 -0.2 178,285 - Psyr_0163 0.90 -0.5 178,285 - Psyr_0163 0.90 -0.4 178,285 - Psyr_0163 0.90 -0.9 178,285 - Psyr_0163 0.90 +0.3 178,285 - Psyr_0163 0.90 +0.5 178,285 - Psyr_0163 0.90 +0.7 178,285 - Psyr_0163 0.90 +0.3 178,285 - Psyr_0163 0.90 -1.1 178,285 - Psyr_0163 0.90 +0.6 178,285 - Psyr_0163 0.90 -0.3 178,285 - Psyr_0163 0.90 -1.6 178,365 + +1.0 178,365 + -2.2 178,365 + +0.4 178,365 + +0.5 178,365 + -1.9 178,365 + -0.7 178,366 - +0.0 178,366 - +0.6 178,366 - -0.8 178,366 - -0.9 178,366 - +0.8 178,366 - +1.6 178,366 - +0.3 178,366 - -1.3 178,366 - -0.2 178,366 - +0.9 178,366 - -2.7 178,366 - +0.9 178,380 + -0.2 178,380 + -0.3 178,381 - -2.7 178,381 - -1.1 178,381 - +0.7 178,381 - -0.3 178,475 + Psyr_0164 0.15 -1.5 178,475 + Psyr_0164 0.15 +0.3 178,476 - Psyr_0164 0.15 -1.3 178,476 - Psyr_0164 0.15 +1.0 178,476 - Psyr_0164 0.15 -0.7 178,476 - Psyr_0164 0.15 +0.4 178,476 - Psyr_0164 0.15 +0.8 178,525 + Psyr_0164 0.22 -1.6 178,525 + Psyr_0164 0.22 +0.3 178,525 + Psyr_0164 0.22 -0.6 178,525 + Psyr_0164 0.22 -0.1 178,526 - Psyr_0164 0.22 -0.0 178,526 - Psyr_0164 0.22 +0.8 178,526 - Psyr_0164 0.22 -0.4 178,526 - Psyr_0164 0.22 +0.3 178,777 + Psyr_0164 0.57 -3.5 178,777 + Psyr_0164 0.57 -0.2 178,777 + Psyr_0164 0.57 -0.6 178,777 + Psyr_0164 0.57 +0.1 178,777 + Psyr_0164 0.57 -1.3 178,777 + Psyr_0164 0.57 -0.0 178,777 + Psyr_0164 0.57 +0.6 178,778 - Psyr_0164 0.57 -0.4 178,778 - Psyr_0164 0.57 -0.2 178,778 - Psyr_0164 0.57 +3.1 178,778 - Psyr_0164 0.57 -0.0 178,778 - Psyr_0164 0.57 -0.1 178,778 - Psyr_0164 0.57 +0.4 178,778 - Psyr_0164 0.57 +0.3 178,789 + Psyr_0164 0.59 -2.0 178,789 + Psyr_0164 0.59 -1.5 178,789 + Psyr_0164 0.59 -2.6 178,806 + Psyr_0164 0.61 -0.7 178,806 + Psyr_0164 0.61 -0.1 178,807 - Psyr_0164 0.62 +1.1 178,807 - Psyr_0164 0.62 +1.5 178,807 - Psyr_0164 0.62 -1.4 178,807 - Psyr_0164 0.62 -0.0 178,807 - Psyr_0164 0.62 +0.2 178,808 + Psyr_0164 0.62 -0.6 178,822 + Psyr_0164 0.64 -0.2 178,822 + Psyr_0164 0.64 -0.2 178,822 + Psyr_0164 0.64 -0.0 178,823 - Psyr_0164 0.64 +0.8 178,823 - Psyr_0164 0.64 -0.4 178,823 - Psyr_0164 0.64 +1.3 178,823 - Psyr_0164 0.64 -0.1 178,878 + Psyr_0164 0.71 -1.0 178,878 + Psyr_0164 0.71 -0.8 178,878 + Psyr_0164 0.71 -0.2 178,878 + Psyr_0164 0.71 +0.3 178,878 + Psyr_0164 0.71 -0.4 178,879 - Psyr_0164 0.72 +0.5 178,879 - Psyr_0164 0.72 -0.6 178,879 - Psyr_0164 0.72 +0.9 178,882 + Psyr_0164 0.72 +0.4 178,882 + Psyr_0164 0.72 -0.5 178,883 - Psyr_0164 0.72 -1.1 178,883 - Psyr_0164 0.72 -0.4 178,931 + Psyr_0164 0.79 -0.2 178,931 + Psyr_0164 0.79 +0.1 178,931 + Psyr_0164 0.79 -0.4 178,931 + Psyr_0164 0.79 -0.1 178,931 + Psyr_0164 0.79 +0.6 178,931 + Psyr_0164 0.79 +3.5 178,932 - Psyr_0164 0.79 -0.5 178,939 - Psyr_0164 0.80 -1.8 178,939 - Psyr_0164 0.80 +1.1 178,993 + Psyr_0164 0.87 +0.3 178,994 - Psyr_0164 0.88 +1.0 178,994 - Psyr_0164 0.88 +1.0 178,994 - Psyr_0164 0.88 +1.0 178,994 - Psyr_0164 0.88 +0.4 179,102 - +0.2 179,128 + -0.4 179,128 + +1.6 179,128 + -0.1 179,128 + -0.3 179,128 + +0.2 179,128 + +0.7 179,128 + +0.3 179,128 + -0.0 179,128 + +0.2 179,128 + -0.9 179,128 + +0.5 179,129 - +1.1 179,129 - -0.0 179,129 - -0.5 179,129 - +0.6 179,129 - -1.1 179,129 - +0.3 179,129 - +1.9 179,129 - -0.2 179,209 + Psyr_0165 0.25 -2.1 179,253 + Psyr_0165 0.34 +1.0 179,253 + Psyr_0165 0.34 -2.6 179,253 + Psyr_0165 0.34 +1.6 179,253 + Psyr_0165 0.34 +1.3 179,253 + Psyr_0165 0.34 -0.1 179,254 - Psyr_0165 0.35 +0.8 179,254 - Psyr_0165 0.35 -0.7 179,399 + Psyr_0165 0.67 +1.5 179,424 + Psyr_0165 0.73 +0.2 179,425 - Psyr_0165 0.73 +1.0 179,458 + Psyr_0165 0.81 -1.2 179,733 - +0.5 179,769 + -0.3 179,769 + +0.7 179,862 + -1.4 179,862 + +0.5 179,862 + -0.9 179,862 + +0.1 179,863 - +1.3 179,863 - -0.6 179,866 + +1.3 179,866 + +1.2 179,866 + -0.4 179,867 - +1.5 179,867 - -0.4 179,877 + +0.2 179,927 - -1.0 180,013 + -0.4 180,014 - +0.3 180,065 + -1.0 180,065 + +0.1 180,065 + +0.5 180,065 + +0.6 180,066 - +2.7 180,066 - +0.4 180,066 - -1.0 180,076 + +0.9 180,077 - -2.3 180,077 - -1.9 180,140 + -0.9 180,140 + +0.0 180,140 + +2.1 180,141 - +0.6 180,141 - -1.3 180,141 - -3.2 180,175 - +0.1 180,195 + +2.9 180,237 - -1.3 180,268 - Psyr_0166 0.12 -2.2 180,399 + Psyr_0166 0.22 -1.6 180,418 + Psyr_0166 0.24 +0.2 180,473 - Psyr_0166 0.28 -1.7 180,529 + Psyr_0166 0.32 +0.6 180,529 + Psyr_0166 0.32 -0.3 180,533 + Psyr_0166 0.32 -3.1 180,533 + Psyr_0166 0.32 -1.1 180,534 - Psyr_0166 0.33 +0.7 180,534 - Psyr_0166 0.33 -0.2 180,534 - Psyr_0166 0.33 -1.1 180,534 - Psyr_0166 0.33 +2.8 180,534 - Psyr_0166 0.33 +0.3 180,534 - Psyr_0166 0.33 -1.2 180,534 - Psyr_0166 0.33 +0.1
Or see this region's nucleotide sequence