Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0155

Experiment: KB with Ginkgolide A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0154 and Psyr_0155 are separated by 1 nucleotidesPsyr_0155 and Psyr_0156 overlap by 4 nucleotidesPsyr_0156 and Psyr_0157 are separated by 31 nucleotides Psyr_0154: Psyr_0154 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal, at 166,777 to 168,618 _0154 Psyr_0155: Psyr_0155 - Binding-protein-dependent transport systems inner membrane component, at 168,620 to 169,498 _0155 Psyr_0156: Psyr_0156 - Binding-protein-dependent transport systems inner membrane component, at 169,495 to 170,451 _0156 Psyr_0157: Psyr_0157 - Twin-arginine translocation pathway signal, at 170,483 to 172,120 _0157 Position (kb) 168 169 170Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 167.871 kb on - strand, within Psyr_0154at 167.871 kb on - strand, within Psyr_0154at 167.990 kb on + strand, within Psyr_0154at 167.990 kb on + strand, within Psyr_0154at 167.990 kb on + strand, within Psyr_0154at 167.990 kb on + strand, within Psyr_0154at 167.990 kb on + strand, within Psyr_0154at 167.990 kb on + strand, within Psyr_0154at 167.990 kb on + strand, within Psyr_0154at 167.991 kb on - strand, within Psyr_0154at 167.991 kb on - strand, within Psyr_0154at 167.991 kb on - strand, within Psyr_0154at 167.991 kb on - strand, within Psyr_0154at 167.991 kb on - strand, within Psyr_0154at 167.991 kb on - strand, within Psyr_0154at 167.991 kb on - strand, within Psyr_0154at 167.991 kb on - strand, within Psyr_0154at 167.991 kb on - strand, within Psyr_0154at 167.991 kb on - strand, within Psyr_0154at 167.991 kb on - strand, within Psyr_0154at 167.991 kb on - strand, within Psyr_0154at 168.338 kb on + strand, within Psyr_0154at 168.338 kb on + strand, within Psyr_0154at 168.338 kb on + strand, within Psyr_0154at 168.338 kb on + strand, within Psyr_0154at 168.339 kb on - strand, within Psyr_0154at 168.339 kb on - strand, within Psyr_0154at 168.794 kb on + strand, within Psyr_0155at 168.794 kb on + strand, within Psyr_0155at 168.795 kb on - strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.912 kb on + strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.913 kb on - strand, within Psyr_0155at 168.916 kb on + strand, within Psyr_0155at 168.916 kb on + strand, within Psyr_0155at 168.917 kb on - strand, within Psyr_0155at 168.917 kb on - strand, within Psyr_0155at 168.951 kb on + strand, within Psyr_0155at 168.952 kb on - strand, within Psyr_0155at 168.952 kb on - strand, within Psyr_0155at 169.011 kb on + strand, within Psyr_0155at 169.011 kb on + strand, within Psyr_0155at 169.011 kb on + strand, within Psyr_0155at 169.272 kb on + strand, within Psyr_0155at 169.272 kb on + strand, within Psyr_0155at 169.272 kb on + strand, within Psyr_0155at 169.273 kb on - strand, within Psyr_0155at 169.273 kb on - strand, within Psyr_0155at 169.291 kb on - strand, within Psyr_0155at 169.562 kb on + strandat 169.563 kb on - strandat 169.652 kb on + strand, within Psyr_0156at 169.653 kb on - strand, within Psyr_0156at 169.694 kb on + strand, within Psyr_0156at 169.694 kb on + strand, within Psyr_0156at 169.760 kb on - strand, within Psyr_0156at 169.760 kb on - strand, within Psyr_0156at 169.898 kb on + strand, within Psyr_0156at 169.898 kb on + strand, within Psyr_0156at 169.898 kb on + strand, within Psyr_0156at 169.899 kb on - strand, within Psyr_0156at 169.899 kb on - strand, within Psyr_0156at 169.899 kb on - strand, within Psyr_0156at 169.899 kb on - strand, within Psyr_0156at 169.940 kb on + strand, within Psyr_0156at 169.940 kb on + strand, within Psyr_0156at 169.941 kb on - strand, within Psyr_0156at 170.072 kb on + strand, within Psyr_0156at 170.073 kb on - strand, within Psyr_0156at 170.073 kb on - strand, within Psyr_0156at 170.247 kb on - strand, within Psyr_0156at 170.445 kb on + strandat 170.445 kb on + strandat 170.445 kb on + strandat 170.446 kb on - strandat 170.446 kb on - strandat 170.446 kb on - strandat 170.446 kb on - strandat 170.446 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM
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167,871 - Psyr_0154 0.59 +1.0
167,871 - Psyr_0154 0.59 +0.1
167,990 + Psyr_0154 0.66 -1.0
167,990 + Psyr_0154 0.66 +1.8
167,990 + Psyr_0154 0.66 +0.8
167,990 + Psyr_0154 0.66 +0.9
167,990 + Psyr_0154 0.66 -1.0
167,990 + Psyr_0154 0.66 -0.9
167,990 + Psyr_0154 0.66 +0.4
167,991 - Psyr_0154 0.66 +1.8
167,991 - Psyr_0154 0.66 +0.6
167,991 - Psyr_0154 0.66 -0.4
167,991 - Psyr_0154 0.66 -0.2
167,991 - Psyr_0154 0.66 -0.2
167,991 - Psyr_0154 0.66 +0.3
167,991 - Psyr_0154 0.66 +2.3
167,991 - Psyr_0154 0.66 -1.5
167,991 - Psyr_0154 0.66 +1.1
167,991 - Psyr_0154 0.66 +0.1
167,991 - Psyr_0154 0.66 +0.8
167,991 - Psyr_0154 0.66 -0.5
168,338 + Psyr_0154 0.85 -1.7
168,338 + Psyr_0154 0.85 -0.1
168,338 + Psyr_0154 0.85 -0.6
168,338 + Psyr_0154 0.85 -0.2
168,339 - Psyr_0154 0.85 -1.3
168,339 - Psyr_0154 0.85 -0.6
168,794 + Psyr_0155 0.20 +0.3
168,794 + Psyr_0155 0.20 -0.6
168,795 - Psyr_0155 0.20 -0.9
168,912 + Psyr_0155 0.33 +0.6
168,912 + Psyr_0155 0.33 +0.1
168,912 + Psyr_0155 0.33 +0.2
168,912 + Psyr_0155 0.33 -1.0
168,912 + Psyr_0155 0.33 -0.2
168,912 + Psyr_0155 0.33 -0.1
168,912 + Psyr_0155 0.33 +0.1
168,912 + Psyr_0155 0.33 -2.9
168,912 + Psyr_0155 0.33 +0.8
168,912 + Psyr_0155 0.33 +0.6
168,912 + Psyr_0155 0.33 -0.9
168,912 + Psyr_0155 0.33 -0.7
168,912 + Psyr_0155 0.33 -0.0
168,913 - Psyr_0155 0.33 -1.3
168,913 - Psyr_0155 0.33 -0.7
168,913 - Psyr_0155 0.33 +0.5
168,913 - Psyr_0155 0.33 -0.9
168,913 - Psyr_0155 0.33 +0.1
168,913 - Psyr_0155 0.33 +1.0
168,913 - Psyr_0155 0.33 -0.1
168,913 - Psyr_0155 0.33 +0.2
168,913 - Psyr_0155 0.33 -1.1
168,913 - Psyr_0155 0.33 -0.9
168,913 - Psyr_0155 0.33 +0.7
168,913 - Psyr_0155 0.33 -0.6
168,913 - Psyr_0155 0.33 +0.5
168,916 + Psyr_0155 0.34 -0.4
168,916 + Psyr_0155 0.34 -0.9
168,917 - Psyr_0155 0.34 +0.6
168,917 - Psyr_0155 0.34 -0.6
168,951 + Psyr_0155 0.38 -3.6
168,952 - Psyr_0155 0.38 -0.2
168,952 - Psyr_0155 0.38 -0.4
169,011 + Psyr_0155 0.44 -0.6
169,011 + Psyr_0155 0.44 -0.3
169,011 + Psyr_0155 0.44 -3.9
169,272 + Psyr_0155 0.74 +1.5
169,272 + Psyr_0155 0.74 -0.5
169,272 + Psyr_0155 0.74 -1.2
169,273 - Psyr_0155 0.74 +2.1
169,273 - Psyr_0155 0.74 +1.5
169,291 - Psyr_0155 0.76 -0.1
169,562 + +0.8
169,563 - -0.7
169,652 + Psyr_0156 0.16 -1.9
169,653 - Psyr_0156 0.17 +0.7
169,694 + Psyr_0156 0.21 -0.5
169,694 + Psyr_0156 0.21 +0.5
169,760 - Psyr_0156 0.28 +1.0
169,760 - Psyr_0156 0.28 +0.3
169,898 + Psyr_0156 0.42 -0.3
169,898 + Psyr_0156 0.42 +1.1
169,898 + Psyr_0156 0.42 -0.8
169,899 - Psyr_0156 0.42 +0.1
169,899 - Psyr_0156 0.42 +1.0
169,899 - Psyr_0156 0.42 -1.2
169,899 - Psyr_0156 0.42 +0.9
169,940 + Psyr_0156 0.46 -0.9
169,940 + Psyr_0156 0.46 -0.8
169,941 - Psyr_0156 0.47 +4.5
170,072 + Psyr_0156 0.60 -0.8
170,073 - Psyr_0156 0.60 +0.6
170,073 - Psyr_0156 0.60 -0.3
170,247 - Psyr_0156 0.79 +0.7
170,445 + -0.5
170,445 + -2.6
170,445 + -0.4
170,446 - -0.1
170,446 - +0.2
170,446 - -0.3
170,446 - -2.5
170,446 - +0.5

Or see this region's nucleotide sequence