Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0088

Experiment: KB with Ginkgolide A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Ginkgolide A 10 mM
94,221	+		Psyr_0087	0.29	+3.1
94,222	-		Psyr_0087	0.29	-0.7
94,222	-		Psyr_0087	0.29	-1.0
94,225	+		Psyr_0087	0.29	+1.3
94,226	-		Psyr_0087	0.29	-1.0
94,226	-		Psyr_0087	0.29	-0.5
94,267	+		Psyr_0087	0.33	-1.1
94,267	+		Psyr_0087	0.33	-2.1
94,513	+		Psyr_0087	0.53	+0.1
94,514	-		Psyr_0087	0.54	-1.4
94,623	+		Psyr_0087	0.63	-0.5
94,623	+		Psyr_0087	0.63	+0.6
94,849	-		Psyr_0087	0.82	-0.0
94,891	+		Psyr_0087	0.85	-1.9
94,891	+		Psyr_0087	0.85	-0.3
94,892	-		Psyr_0087	0.85	-0.5
95,039	-				-0.4
95,110	+				-2.7
95,125	+				-0.7
95,193	+				-0.0
95,242	-				-0.2
95,392	+		Psyr_0088	0.21	-1.3
95,392	+		Psyr_0088	0.21	-0.1
95,392	+		Psyr_0088	0.21	-1.1
95,392	+		Psyr_0088	0.21	-1.9
95,392	+		Psyr_0088	0.21	-0.8
95,392	+		Psyr_0088	0.21	-0.0
95,392	+		Psyr_0088	0.21	+0.5
95,392	+		Psyr_0088	0.21	-0.1
95,392	+		Psyr_0088	0.21	+0.0
95,392	+		Psyr_0088	0.21	+1.0
95,392	+		Psyr_0088	0.21	+1.1
95,392	+		Psyr_0088	0.21	-1.2
95,392	+		Psyr_0088	0.21	-0.1
95,393	-		Psyr_0088	0.21	+0.4
95,393	-		Psyr_0088	0.21	+0.0
95,393	-		Psyr_0088	0.21	+0.2
95,393	-		Psyr_0088	0.21	+0.7
95,393	-		Psyr_0088	0.21	-0.1
95,393	-		Psyr_0088	0.21	-1.2
95,393	-		Psyr_0088	0.21	+0.0
95,393	-		Psyr_0088	0.21	+0.1
95,393	-		Psyr_0088	0.21	-0.6
95,407	+		Psyr_0088	0.22	-1.1
95,452	+		Psyr_0088	0.26	-4.0
95,453	-		Psyr_0088	0.27	-0.1
95,453	-		Psyr_0088	0.27	+0.8
95,494	+		Psyr_0088	0.31	-0.3
95,495	-		Psyr_0088	0.31	+0.5
95,852	-		Psyr_0088	0.66	+0.8
95,852	-		Psyr_0088	0.66	-0.7
95,964	-		Psyr_0088	0.77	-2.5
96,148	+				-1.2
96,148	+				-1.3
96,148	+				-1.5
96,148	+				-1.3
96,149	-				+0.5
96,149	-				-1.1
96,149	-				+0.3
96,149	-				+1.0
96,149	-				-0.5
96,149	-				-0.1
96,209	+				-0.4
96,209	+				+0.1
96,210	-				-1.5
96,210	-				-1.7
96,210	-				+1.3
96,210	-				+0.2
96,210	-				-0.2
96,257	+				-1.4
96,258	-				+0.3
96,331	-				+0.8
96,331	-				+0.5
96,331	-				-0.0
96,331	-				-2.0
96,331	-				+0.9
96,331	-				+2.1
96,331	-				+0.3
96,331	-				-0.9
96,333	-				+0.1
96,333	-				-0.4
96,333	-				-0.4
96,333	-				-0.6
96,333	-				+0.0
96,333	-				-0.8
96,333	-				-1.1
96,333	-				-0.4
96,333	-				-0.4
96,333	-				+0.9
96,357	+				-1.5
96,357	+				-0.6
96,357	+				+1.3
96,357	+				+0.2
96,438	+				-0.3
96,438	+				-0.2
96,439	-				-0.6
96,439	-				+1.1
96,440	+				-1.6
96,440	+				+1.2
96,440	+				-0.1
96,440	+				+1.3
96,440	+				-0.1
96,440	+				-0.5
96,441	-				+2.2
96,441	-				-0.1
96,441	-				-1.5
96,465	+				+0.2
96,465	+				+1.1
96,465	+				-0.1
96,465	+				+0.5
96,465	+				+0.6
96,548	+				-0.7
96,548	+				+1.1
96,548	+				+0.1
96,595	+				-1.5
96,595	+				-0.9
96,595	+				-0.4
96,595	+				-0.2
96,595	+				+1.1
96,595	+				-2.2
96,596	-				+0.2
96,596	-				-2.1
96,596	-				-0.3
96,596	-				-1.4
96,596	-				-0.6
96,596	-				+0.2
96,596	-				+0.8
96,625	+				+0.5
96,681	+				-0.7
96,681	+				+0.6
96,681	+				+1.3
96,703	+				-2.1
96,733	+				-1.3
96,733	+				+1.5
96,734	-				-0.1
96,734	-				-0.2
96,734	-				+0.6
96,762	+				-0.3
96,762	+				-0.4
96,763	-				-0.0
96,764	+				+0.5
96,765	-				-0.7
96,765	-				-0.5
96,765	-				+0.0
96,789	+				-0.0
96,789	+				+0.4
96,789	+				+2.9
96,790	-				-1.0
96,790	-				+0.3
96,812	-				-0.1
96,905	+				-1.2
96,905	+				+1.5
96,944	+				-0.7