Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0067

Experiment: KB with Ginkgolide A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0066 and Psyr_0067 are separated by 4 nucleotidesPsyr_0067 and Psyr_0068 are separated by 96 nucleotides Psyr_0066: Psyr_0066 - bifunctional spore maturation protein, fused SpmA/SpmB, at 66,405 to 67,646 _0066 Psyr_0067: Psyr_0067 - membrane protein, putative, at 67,651 to 68,844 _0067 Psyr_0068: Psyr_0068 - Insulinase-like:Peptidase M16, C-terminal, at 68,941 to 70,317 _0068 Position (kb) 67 68 69Strain fitness (log2 ratio) -2 -1 0 1 2at 66.883 kb on - strand, within Psyr_0066at 66.883 kb on - strand, within Psyr_0066at 66.883 kb on - strand, within Psyr_0066at 67.023 kb on + strand, within Psyr_0066at 67.023 kb on + strand, within Psyr_0066at 67.024 kb on - strand, within Psyr_0066at 67.024 kb on - strand, within Psyr_0066at 67.169 kb on - strand, within Psyr_0066at 67.245 kb on + strand, within Psyr_0066at 67.246 kb on - strand, within Psyr_0066at 67.246 kb on - strand, within Psyr_0066at 67.506 kb on + strand, within Psyr_0066at 67.506 kb on + strand, within Psyr_0066at 67.506 kb on + strand, within Psyr_0066at 67.506 kb on + strand, within Psyr_0066at 67.506 kb on + strand, within Psyr_0066at 67.506 kb on + strand, within Psyr_0066at 67.506 kb on + strand, within Psyr_0066at 67.506 kb on + strand, within Psyr_0066at 67.507 kb on - strand, within Psyr_0066at 67.507 kb on - strand, within Psyr_0066at 67.507 kb on - strand, within Psyr_0066at 67.507 kb on - strand, within Psyr_0066at 67.507 kb on - strand, within Psyr_0066at 67.507 kb on - strand, within Psyr_0066at 67.507 kb on - strand, within Psyr_0066at 67.510 kb on + strand, within Psyr_0066at 67.510 kb on + strand, within Psyr_0066at 67.510 kb on + strand, within Psyr_0066at 67.511 kb on - strand, within Psyr_0066at 67.511 kb on - strand, within Psyr_0066at 67.511 kb on - strand, within Psyr_0066at 67.511 kb on - strand, within Psyr_0066at 67.522 kb on - strandat 67.652 kb on + strandat 67.755 kb on + strandat 67.756 kb on - strandat 67.862 kb on - strand, within Psyr_0067at 68.024 kb on + strand, within Psyr_0067at 68.024 kb on + strand, within Psyr_0067at 68.024 kb on + strand, within Psyr_0067at 68.024 kb on + strand, within Psyr_0067at 68.024 kb on + strand, within Psyr_0067at 68.024 kb on + strand, within Psyr_0067at 68.025 kb on - strand, within Psyr_0067at 68.025 kb on - strand, within Psyr_0067at 68.025 kb on - strand, within Psyr_0067at 68.025 kb on - strand, within Psyr_0067at 68.025 kb on - strand, within Psyr_0067at 68.025 kb on - strand, within Psyr_0067at 68.025 kb on - strand, within Psyr_0067at 68.025 kb on - strand, within Psyr_0067at 68.025 kb on - strand, within Psyr_0067at 68.025 kb on - strand, within Psyr_0067at 68.025 kb on - strand, within Psyr_0067at 68.028 kb on + strand, within Psyr_0067at 68.028 kb on + strand, within Psyr_0067at 68.028 kb on + strand, within Psyr_0067at 68.028 kb on + strand, within Psyr_0067at 68.028 kb on + strand, within Psyr_0067at 68.028 kb on + strand, within Psyr_0067at 68.028 kb on + strand, within Psyr_0067at 68.029 kb on - strand, within Psyr_0067at 68.029 kb on - strand, within Psyr_0067at 68.029 kb on - strand, within Psyr_0067at 68.066 kb on + strand, within Psyr_0067at 68.066 kb on + strand, within Psyr_0067at 68.067 kb on - strand, within Psyr_0067at 68.072 kb on + strand, within Psyr_0067at 68.072 kb on + strand, within Psyr_0067at 68.072 kb on + strand, within Psyr_0067at 68.073 kb on - strand, within Psyr_0067at 68.073 kb on - strand, within Psyr_0067at 68.115 kb on + strand, within Psyr_0067at 68.115 kb on + strand, within Psyr_0067at 68.116 kb on - strand, within Psyr_0067at 68.116 kb on - strand, within Psyr_0067at 68.311 kb on + strand, within Psyr_0067at 68.312 kb on - strand, within Psyr_0067at 68.339 kb on + strand, within Psyr_0067at 68.339 kb on + strand, within Psyr_0067at 68.340 kb on - strand, within Psyr_0067at 68.453 kb on + strand, within Psyr_0067at 68.453 kb on + strand, within Psyr_0067at 68.453 kb on + strand, within Psyr_0067at 68.453 kb on + strand, within Psyr_0067at 68.454 kb on - strand, within Psyr_0067at 68.454 kb on - strand, within Psyr_0067at 68.454 kb on - strand, within Psyr_0067at 68.454 kb on - strand, within Psyr_0067at 68.456 kb on + strand, within Psyr_0067at 68.456 kb on + strand, within Psyr_0067at 68.456 kb on + strand, within Psyr_0067at 68.456 kb on + strand, within Psyr_0067at 68.456 kb on + strand, within Psyr_0067at 68.457 kb on - strand, within Psyr_0067at 68.457 kb on - strand, within Psyr_0067at 68.457 kb on - strand, within Psyr_0067at 68.825 kb on + strandat 68.825 kb on + strandat 68.825 kb on + strandat 68.826 kb on - strandat 68.870 kb on + strandat 68.870 kb on + strandat 68.871 kb on - strandat 68.942 kb on + strandat 68.942 kb on + strandat 68.942 kb on + strandat 68.942 kb on + strandat 68.942 kb on + strandat 68.942 kb on + strandat 68.942 kb on + strandat 68.942 kb on + strandat 68.943 kb on - strandat 68.943 kb on - strandat 68.943 kb on - strandat 68.943 kb on - strandat 68.943 kb on - strandat 68.943 kb on - strandat 68.943 kb on - strandat 68.943 kb on - strandat 68.943 kb on - strandat 68.943 kb on - strandat 68.943 kb on - strandat 68.943 kb on - strandat 68.954 kb on - strandat 69.014 kb on + strandat 69.056 kb on + strandat 69.056 kb on + strandat 69.057 kb on - strandat 69.057 kb on - strandat 69.155 kb on + strand, within Psyr_0068at 69.176 kb on + strand, within Psyr_0068at 69.176 kb on + strand, within Psyr_0068at 69.176 kb on + strand, within Psyr_0068at 69.177 kb on - strand, within Psyr_0068at 69.177 kb on - strand, within Psyr_0068at 69.177 kb on - strand, within Psyr_0068at 69.179 kb on + strand, within Psyr_0068at 69.180 kb on - strand, within Psyr_0068at 69.180 kb on - strand, within Psyr_0068at 69.180 kb on - strand, within Psyr_0068at 69.207 kb on + strand, within Psyr_0068at 69.208 kb on - strand, within Psyr_0068at 69.208 kb on - strand, within Psyr_0068at 69.255 kb on + strand, within Psyr_0068at 69.255 kb on + strand, within Psyr_0068at 69.434 kb on + strand, within Psyr_0068at 69.435 kb on - strand, within Psyr_0068at 69.435 kb on - strand, within Psyr_0068at 69.435 kb on - strand, within Psyr_0068at 69.636 kb on - strand, within Psyr_0068at 69.650 kb on + strand, within Psyr_0068at 69.650 kb on + strand, within Psyr_0068

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ginkgolide A 10 mM
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66,883 - Psyr_0066 0.38 -0.2
66,883 - Psyr_0066 0.38 -0.5
66,883 - Psyr_0066 0.38 +0.9
67,023 + Psyr_0066 0.50 +0.4
67,023 + Psyr_0066 0.50 +0.2
67,024 - Psyr_0066 0.50 -1.3
67,024 - Psyr_0066 0.50 +0.7
67,169 - Psyr_0066 0.62 +0.5
67,245 + Psyr_0066 0.68 +0.0
67,246 - Psyr_0066 0.68 -0.9
67,246 - Psyr_0066 0.68 +2.1
67,506 + Psyr_0066 0.89 +0.0
67,506 + Psyr_0066 0.89 +0.0
67,506 + Psyr_0066 0.89 -0.9
67,506 + Psyr_0066 0.89 +0.4
67,506 + Psyr_0066 0.89 +0.9
67,506 + Psyr_0066 0.89 -0.8
67,506 + Psyr_0066 0.89 +2.3
67,506 + Psyr_0066 0.89 -1.8
67,507 - Psyr_0066 0.89 -0.1
67,507 - Psyr_0066 0.89 +0.5
67,507 - Psyr_0066 0.89 -0.3
67,507 - Psyr_0066 0.89 -0.8
67,507 - Psyr_0066 0.89 +1.6
67,507 - Psyr_0066 0.89 -0.6
67,507 - Psyr_0066 0.89 -0.7
67,510 + Psyr_0066 0.89 -0.2
67,510 + Psyr_0066 0.89 +1.0
67,510 + Psyr_0066 0.89 +1.4
67,511 - Psyr_0066 0.89 -2.6
67,511 - Psyr_0066 0.89 -2.3
67,511 - Psyr_0066 0.89 +2.1
67,511 - Psyr_0066 0.89 -2.1
67,522 - +0.2
67,652 + -0.6
67,755 + -1.3
67,756 - -0.3
67,862 - Psyr_0067 0.18 +2.1
68,024 + Psyr_0067 0.31 -0.1
68,024 + Psyr_0067 0.31 -0.6
68,024 + Psyr_0067 0.31 +2.0
68,024 + Psyr_0067 0.31 -0.4
68,024 + Psyr_0067 0.31 -1.1
68,024 + Psyr_0067 0.31 -1.0
68,025 - Psyr_0067 0.31 +0.1
68,025 - Psyr_0067 0.31 -0.3
68,025 - Psyr_0067 0.31 -1.4
68,025 - Psyr_0067 0.31 -0.1
68,025 - Psyr_0067 0.31 -1.4
68,025 - Psyr_0067 0.31 -1.1
68,025 - Psyr_0067 0.31 -2.0
68,025 - Psyr_0067 0.31 -1.0
68,025 - Psyr_0067 0.31 -0.1
68,025 - Psyr_0067 0.31 -2.0
68,025 - Psyr_0067 0.31 -0.2
68,028 + Psyr_0067 0.32 -0.8
68,028 + Psyr_0067 0.32 +0.2
68,028 + Psyr_0067 0.32 -0.5
68,028 + Psyr_0067 0.32 +0.1
68,028 + Psyr_0067 0.32 -0.0
68,028 + Psyr_0067 0.32 +2.5
68,028 + Psyr_0067 0.32 +0.4
68,029 - Psyr_0067 0.32 -0.1
68,029 - Psyr_0067 0.32 +0.5
68,029 - Psyr_0067 0.32 -1.2
68,066 + Psyr_0067 0.35 +0.5
68,066 + Psyr_0067 0.35 +0.3
68,067 - Psyr_0067 0.35 -2.2
68,072 + Psyr_0067 0.35 +0.2
68,072 + Psyr_0067 0.35 -0.2
68,072 + Psyr_0067 0.35 +1.3
68,073 - Psyr_0067 0.35 -0.1
68,073 - Psyr_0067 0.35 +2.0
68,115 + Psyr_0067 0.39 -0.2
68,115 + Psyr_0067 0.39 -0.3
68,116 - Psyr_0067 0.39 -0.0
68,116 - Psyr_0067 0.39 -2.1
68,311 + Psyr_0067 0.55 -2.6
68,312 - Psyr_0067 0.55 -0.3
68,339 + Psyr_0067 0.58 -1.3
68,339 + Psyr_0067 0.58 -1.0
68,340 - Psyr_0067 0.58 -0.2
68,453 + Psyr_0067 0.67 -1.1
68,453 + Psyr_0067 0.67 +0.3
68,453 + Psyr_0067 0.67 +0.6
68,453 + Psyr_0067 0.67 -1.1
68,454 - Psyr_0067 0.67 -0.5
68,454 - Psyr_0067 0.67 +0.0
68,454 - Psyr_0067 0.67 -0.1
68,454 - Psyr_0067 0.67 -0.1
68,456 + Psyr_0067 0.67 -1.4
68,456 + Psyr_0067 0.67 +0.0
68,456 + Psyr_0067 0.67 +1.1
68,456 + Psyr_0067 0.67 -0.3
68,456 + Psyr_0067 0.67 -1.3
68,457 - Psyr_0067 0.68 -0.5
68,457 - Psyr_0067 0.68 -1.6
68,457 - Psyr_0067 0.68 +0.1
68,825 + +1.1
68,825 + -0.2
68,825 + -1.1
68,826 - -1.5
68,870 + +0.1
68,870 + +0.2
68,871 - -1.1
68,942 + -1.8
68,942 + -0.3
68,942 + -0.4
68,942 + +0.9
68,942 + -2.2
68,942 + +1.2
68,942 + -1.3
68,942 + +0.2
68,943 - -0.0
68,943 - +1.2
68,943 - +1.1
68,943 - -1.5
68,943 - +1.3
68,943 - -1.3
68,943 - -0.5
68,943 - -0.3
68,943 - -2.1
68,943 - -0.7
68,943 - -0.4
68,943 - +0.0
68,954 - +0.3
69,014 + +0.1
69,056 + +0.4
69,056 + -1.7
69,057 - -1.1
69,057 - -2.1
69,155 + Psyr_0068 0.16 +0.3
69,176 + Psyr_0068 0.17 +0.1
69,176 + Psyr_0068 0.17 -0.8
69,176 + Psyr_0068 0.17 +0.5
69,177 - Psyr_0068 0.17 -1.0
69,177 - Psyr_0068 0.17 -0.6
69,177 - Psyr_0068 0.17 +1.0
69,179 + Psyr_0068 0.17 -1.8
69,180 - Psyr_0068 0.17 -2.2
69,180 - Psyr_0068 0.17 -0.4
69,180 - Psyr_0068 0.17 -0.9
69,207 + Psyr_0068 0.19 +1.7
69,208 - Psyr_0068 0.19 -0.4
69,208 - Psyr_0068 0.19 +1.9
69,255 + Psyr_0068 0.23 +0.6
69,255 + Psyr_0068 0.23 -0.4
69,434 + Psyr_0068 0.36 -1.2
69,435 - Psyr_0068 0.36 -1.0
69,435 - Psyr_0068 0.36 +0.2
69,435 - Psyr_0068 0.36 -0.5
69,636 - Psyr_0068 0.50 -0.2
69,650 + Psyr_0068 0.51 +1.2
69,650 + Psyr_0068 0.51 +2.1

Or see this region's nucleotide sequence