Experiment: Taped volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23400 and HSERO_RS23405 are separated by 258 nucleotides HSERO_RS23405 and HSERO_RS23410 are separated by 110 nucleotides HSERO_RS23410 and HSERO_RS23415 are separated by 134 nucleotides
HSERO_RS23400: HSERO_RS23400 - DNA processing protein DprA, at 5,369,650 to 5,370,786
_RS23400
HSERO_RS23405: HSERO_RS23405 - peptide deformylase, at 5,371,045 to 5,371,563
_RS23405
HSERO_RS23410: HSERO_RS23410 - L-aspartate dehydrogenase, at 5,371,674 to 5,372,447
_RS23410
HSERO_RS23415: HSERO_RS23415 - hypothetical protein, at 5,372,582 to 5,373,439
_RS23415
Position (kb) 5371
5372
5373 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 5370.694 kb on + strand at 5370.730 kb on + strand at 5370.904 kb on - strand at 5370.999 kb on + strand at 5371.793 kb on + strand, within HSERO_RS23410 at 5371.793 kb on - strand, within HSERO_RS23410 at 5371.825 kb on + strand, within HSERO_RS23410 at 5371.872 kb on - strand, within HSERO_RS23410 at 5371.894 kb on - strand, within HSERO_RS23410 at 5372.075 kb on - strand, within HSERO_RS23410 at 5372.255 kb on + strand, within HSERO_RS23410 at 5372.303 kb on - strand, within HSERO_RS23410 at 5372.485 kb on - strand at 5372.529 kb on + strand at 5372.605 kb on - strand at 5372.864 kb on - strand, within HSERO_RS23415 at 5372.931 kb on - strand, within HSERO_RS23415 at 5372.931 kb on - strand, within HSERO_RS23415 at 5373.009 kb on - strand, within HSERO_RS23415 at 5373.079 kb on - strand, within HSERO_RS23415 at 5373.079 kb on - strand, within HSERO_RS23415 at 5373.300 kb on - strand, within HSERO_RS23415 at 5373.379 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Taped volatile agar plate with Trichoderma atroviridae IMI remove 5,370,694 + +0.6 5,370,730 + -0.1 5,370,904 - +0.9 5,370,999 + +0.7 5,371,793 + HSERO_RS23410 0.15 -0.6 5,371,793 - HSERO_RS23410 0.15 +0.3 5,371,825 + HSERO_RS23410 0.20 -1.2 5,371,872 - HSERO_RS23410 0.26 +4.1 5,371,894 - HSERO_RS23410 0.28 -0.6 5,372,075 - HSERO_RS23410 0.52 +0.9 5,372,255 + HSERO_RS23410 0.75 -0.5 5,372,303 - HSERO_RS23410 0.81 -1.6 5,372,485 - +0.3 5,372,529 + -0.2 5,372,605 - -0.4 5,372,864 - HSERO_RS23415 0.33 -0.9 5,372,931 - HSERO_RS23415 0.41 -0.2 5,372,931 - HSERO_RS23415 0.41 +0.0 5,373,009 - HSERO_RS23415 0.50 -0.7 5,373,079 - HSERO_RS23415 0.58 +0.0 5,373,079 - HSERO_RS23415 0.58 -0.1 5,373,300 - HSERO_RS23415 0.84 -0.1 5,373,379 - -0.4
Or see this region's nucleotide sequence