Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS10900

Experiment: Taped volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS10890 and HSERO_RS10895 are separated by 255 nucleotidesHSERO_RS10895 and HSERO_RS10900 overlap by 1 nucleotidesHSERO_RS10900 and HSERO_RS10905 are separated by 35 nucleotides HSERO_RS10890: HSERO_RS10890 - ribosome recycling factor, at 2,456,522 to 2,457,082 _RS10890 HSERO_RS10895: HSERO_RS10895 - UDP diphosphate synthase, at 2,457,338 to 2,458,027 _RS10895 HSERO_RS10900: HSERO_RS10900 - CDP-diglyceride synthase, at 2,458,027 to 2,458,854 _RS10900 HSERO_RS10905: HSERO_RS10905 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 2,458,890 to 2,460,062 _RS10905 Position (kb) 2458 2459Strain fitness (log2 ratio) -1 0 1at 2457.077 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Taped volatile agar plate with Trichoderma atroviridae IMI
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2,457,077 + -0.5

Or see this region's nucleotide sequence