Experiment: Taped volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS05775 and HSERO_RS05780 are separated by 120 nucleotides HSERO_RS05780 and HSERO_RS05785 are separated by 48 nucleotides
HSERO_RS05775: HSERO_RS05775 - LysR family transcriptional regulator, at 1,315,720 to 1,316,688
_RS05775
HSERO_RS05780: HSERO_RS05780 - transcriptional regulator, at 1,316,809 to 1,317,246
_RS05780
HSERO_RS05785: HSERO_RS05785 - MFS transporter, at 1,317,295 to 1,318,587
_RS05785
Position (kb) 1316
1317
1318 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1315.824 kb on - strand, within HSERO_RS05775 at 1315.824 kb on - strand, within HSERO_RS05775 at 1315.909 kb on - strand, within HSERO_RS05775 at 1315.989 kb on + strand, within HSERO_RS05775 at 1315.997 kb on - strand, within HSERO_RS05775 at 1315.997 kb on - strand, within HSERO_RS05775 at 1316.119 kb on - strand, within HSERO_RS05775 at 1316.158 kb on - strand, within HSERO_RS05775 at 1316.173 kb on - strand, within HSERO_RS05775 at 1316.186 kb on - strand, within HSERO_RS05775 at 1316.288 kb on + strand, within HSERO_RS05775 at 1316.335 kb on - strand, within HSERO_RS05775 at 1316.335 kb on - strand, within HSERO_RS05775 at 1316.484 kb on + strand, within HSERO_RS05775 at 1316.671 kb on + strand at 1316.884 kb on - strand, within HSERO_RS05780 at 1316.921 kb on - strand, within HSERO_RS05780 at 1316.981 kb on - strand, within HSERO_RS05780 at 1316.995 kb on + strand, within HSERO_RS05780 at 1317.003 kb on - strand, within HSERO_RS05780 at 1317.018 kb on + strand, within HSERO_RS05780 at 1317.248 kb on - strand at 1317.272 kb on + strand at 1317.275 kb on - strand at 1317.280 kb on - strand at 1317.343 kb on + strand at 1317.343 kb on + strand at 1317.382 kb on - strand at 1317.382 kb on - strand at 1317.619 kb on + strand, within HSERO_RS05785 at 1317.659 kb on - strand, within HSERO_RS05785 at 1317.723 kb on + strand, within HSERO_RS05785 at 1317.879 kb on - strand, within HSERO_RS05785 at 1317.944 kb on - strand, within HSERO_RS05785 at 1317.950 kb on - strand, within HSERO_RS05785 at 1318.091 kb on - strand, within HSERO_RS05785 at 1318.091 kb on - strand, within HSERO_RS05785 at 1318.154 kb on + strand, within HSERO_RS05785 at 1318.162 kb on - strand, within HSERO_RS05785 at 1318.177 kb on + strand, within HSERO_RS05785 at 1318.207 kb on - strand, within HSERO_RS05785
Per-strain Table
Position Strand Gene LocusTag Fraction Taped volatile agar plate with Trichoderma atroviridae IMI remove 1,315,824 - HSERO_RS05775 0.11 +0.2 1,315,824 - HSERO_RS05775 0.11 +0.6 1,315,909 - HSERO_RS05775 0.20 +0.8 1,315,989 + HSERO_RS05775 0.28 +0.5 1,315,997 - HSERO_RS05775 0.29 +0.0 1,315,997 - HSERO_RS05775 0.29 -0.0 1,316,119 - HSERO_RS05775 0.41 +1.0 1,316,158 - HSERO_RS05775 0.45 -0.7 1,316,173 - HSERO_RS05775 0.47 -0.1 1,316,186 - HSERO_RS05775 0.48 -0.9 1,316,288 + HSERO_RS05775 0.59 +1.1 1,316,335 - HSERO_RS05775 0.63 +0.4 1,316,335 - HSERO_RS05775 0.63 +1.6 1,316,484 + HSERO_RS05775 0.79 +0.6 1,316,671 + +2.1 1,316,884 - HSERO_RS05780 0.17 -0.1 1,316,921 - HSERO_RS05780 0.26 +0.9 1,316,981 - HSERO_RS05780 0.39 -1.5 1,316,995 + HSERO_RS05780 0.42 +0.5 1,317,003 - HSERO_RS05780 0.44 -0.9 1,317,018 + HSERO_RS05780 0.48 +0.8 1,317,248 - +1.3 1,317,272 + -1.1 1,317,275 - +1.1 1,317,280 - +0.4 1,317,343 + -0.3 1,317,343 + +1.0 1,317,382 - -0.1 1,317,382 - +0.9 1,317,619 + HSERO_RS05785 0.25 +0.3 1,317,659 - HSERO_RS05785 0.28 -0.9 1,317,723 + HSERO_RS05785 0.33 +2.1 1,317,879 - HSERO_RS05785 0.45 +0.8 1,317,944 - HSERO_RS05785 0.50 -1.8 1,317,950 - HSERO_RS05785 0.51 +1.4 1,318,091 - HSERO_RS05785 0.62 +1.3 1,318,091 - HSERO_RS05785 0.62 -0.2 1,318,154 + HSERO_RS05785 0.66 +0.5 1,318,162 - HSERO_RS05785 0.67 +0.3 1,318,177 + HSERO_RS05785 0.68 +0.7 1,318,207 - HSERO_RS05785 0.71 +1.5
Or see this region's nucleotide sequence