Experiment: Taped volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS00105 and HSERO_RS00110 overlap by 10 nucleotides HSERO_RS00110 and HSERO_RS00115 are separated by 68 nucleotides
HSERO_RS00105: HSERO_RS00105 - hypothetical protein, at 32,022 to 33,752
_RS00105
HSERO_RS00110: HSERO_RS00110 - hypothetical protein, at 33,743 to 34,816
_RS00110
HSERO_RS00115: HSERO_RS00115 - hypothetical protein, at 34,885 to 35,952
_RS00115
Position (kb) 33
34
35 Strain fitness (log2 ratio) -2
-1
0
1
2 at 32.802 kb on - strand, within HSERO_RS00105 at 33.014 kb on + strand, within HSERO_RS00105 at 33.014 kb on + strand, within HSERO_RS00105 at 33.014 kb on + strand, within HSERO_RS00105 at 33.014 kb on + strand, within HSERO_RS00105 at 33.022 kb on - strand, within HSERO_RS00105 at 33.022 kb on - strand, within HSERO_RS00105 at 33.037 kb on - strand, within HSERO_RS00105 at 33.078 kb on - strand, within HSERO_RS00105 at 33.173 kb on + strand, within HSERO_RS00105 at 33.174 kb on + strand, within HSERO_RS00105 at 33.248 kb on - strand, within HSERO_RS00105 at 33.290 kb on + strand, within HSERO_RS00105 at 33.321 kb on - strand, within HSERO_RS00105 at 33.335 kb on + strand, within HSERO_RS00105 at 33.335 kb on + strand, within HSERO_RS00105 at 33.349 kb on - strand, within HSERO_RS00105 at 33.370 kb on + strand, within HSERO_RS00105 at 33.521 kb on + strand at 33.531 kb on + strand, within HSERO_RS00105 at 33.586 kb on - strand at 33.680 kb on + strand at 33.683 kb on + strand at 33.735 kb on + strand at 33.737 kb on + strand at 33.743 kb on - strand at 33.743 kb on - strand at 33.821 kb on + strand at 33.821 kb on + strand at 33.821 kb on + strand at 33.829 kb on - strand at 33.849 kb on + strand at 33.857 kb on - strand, within HSERO_RS00110 at 33.857 kb on - strand, within HSERO_RS00110 at 33.929 kb on + strand, within HSERO_RS00110 at 33.929 kb on + strand at 33.937 kb on - strand, within HSERO_RS00110 at 33.976 kb on + strand, within HSERO_RS00110 at 33.976 kb on + strand, within HSERO_RS00110 at 33.990 kb on + strand, within HSERO_RS00110 at 33.990 kb on + strand, within HSERO_RS00110 at 33.998 kb on - strand, within HSERO_RS00110 at 33.998 kb on - strand, within HSERO_RS00110 at 33.998 kb on - strand, within HSERO_RS00110 at 33.998 kb on - strand, within HSERO_RS00110 at 34.043 kb on + strand, within HSERO_RS00110 at 34.046 kb on - strand, within HSERO_RS00110 at 34.048 kb on + strand, within HSERO_RS00110 at 34.048 kb on + strand at 34.048 kb on + strand, within HSERO_RS00110 at 34.048 kb on + strand, within HSERO_RS00110 at 34.048 kb on + strand, within HSERO_RS00110 at 34.048 kb on + strand, within HSERO_RS00110 at 34.048 kb on + strand, within HSERO_RS00110 at 34.048 kb on + strand, within HSERO_RS00110 at 34.048 kb on + strand, within HSERO_RS00110 at 34.048 kb on + strand, within HSERO_RS00110 at 34.054 kb on + strand, within HSERO_RS00110 at 34.056 kb on - strand, within HSERO_RS00110 at 34.056 kb on - strand, within HSERO_RS00110 at 34.056 kb on - strand, within HSERO_RS00110 at 34.056 kb on - strand, within HSERO_RS00110 at 34.056 kb on - strand, within HSERO_RS00110 at 34.056 kb on - strand, within HSERO_RS00110 at 34.056 kb on - strand, within HSERO_RS00110 at 34.056 kb on - strand, within HSERO_RS00110 at 34.059 kb on + strand, within HSERO_RS00110 at 34.062 kb on - strand, within HSERO_RS00110 at 34.067 kb on - strand, within HSERO_RS00110 at 34.116 kb on + strand, within HSERO_RS00110 at 34.116 kb on + strand, within HSERO_RS00110 at 34.116 kb on + strand, within HSERO_RS00110 at 34.124 kb on - strand, within HSERO_RS00110 at 34.136 kb on - strand, within HSERO_RS00110 at 34.137 kb on + strand, within HSERO_RS00110 at 34.158 kb on - strand, within HSERO_RS00110 at 34.158 kb on - strand, within HSERO_RS00110 at 34.162 kb on - strand, within HSERO_RS00110 at 34.189 kb on + strand, within HSERO_RS00110 at 34.197 kb on - strand, within HSERO_RS00110 at 34.202 kb on - strand, within HSERO_RS00110 at 34.213 kb on - strand, within HSERO_RS00110 at 34.515 kb on + strand, within HSERO_RS00110 at 34.531 kb on + strand, within HSERO_RS00110 at 34.531 kb on + strand at 34.573 kb on - strand at 34.729 kb on - strand at 34.736 kb on - strand at 34.736 kb on - strand at 34.780 kb on + strand at 34.793 kb on - strand at 34.810 kb on + strand at 34.836 kb on + strand at 34.837 kb on - strand at 34.842 kb on - strand at 34.842 kb on - strand at 34.842 kb on - strand at 34.864 kb on - strand at 34.947 kb on + strand at 34.947 kb on + strand at 34.960 kb on - strand at 34.980 kb on - strand at 34.980 kb on - strand at 34.983 kb on + strand at 34.991 kb on - strand at 34.993 kb on + strand, within HSERO_RS00115 at 34.999 kb on - strand, within HSERO_RS00115 at 35.046 kb on - strand, within HSERO_RS00115 at 35.071 kb on + strand, within HSERO_RS00115 at 35.071 kb on + strand, within HSERO_RS00115 at 35.112 kb on + strand, within HSERO_RS00115 at 35.113 kb on + strand, within HSERO_RS00115 at 35.113 kb on + strand, within HSERO_RS00115 at 35.113 kb on + strand, within HSERO_RS00115 at 35.126 kb on - strand, within HSERO_RS00115 at 35.126 kb on - strand, within HSERO_RS00115 at 35.126 kb on - strand, within HSERO_RS00115 at 35.132 kb on + strand, within HSERO_RS00115 at 35.132 kb on + strand, within HSERO_RS00115 at 35.140 kb on - strand, within HSERO_RS00115 at 35.190 kb on + strand, within HSERO_RS00115 at 35.190 kb on + strand, within HSERO_RS00115 at 35.190 kb on + strand, within HSERO_RS00115 at 35.190 kb on + strand, within HSERO_RS00115 at 35.190 kb on + strand, within HSERO_RS00115 at 35.198 kb on - strand, within HSERO_RS00115 at 35.198 kb on - strand, within HSERO_RS00115 at 35.198 kb on - strand, within HSERO_RS00115 at 35.198 kb on - strand, within HSERO_RS00115 at 35.200 kb on + strand, within HSERO_RS00115 at 35.209 kb on - strand, within HSERO_RS00115 at 35.238 kb on + strand, within HSERO_RS00115 at 35.256 kb on + strand, within HSERO_RS00115 at 35.263 kb on + strand, within HSERO_RS00115 at 35.270 kb on + strand, within HSERO_RS00115 at 35.271 kb on - strand, within HSERO_RS00115 at 35.278 kb on - strand, within HSERO_RS00115 at 35.283 kb on + strand, within HSERO_RS00115 at 35.285 kb on + strand, within HSERO_RS00115 at 35.295 kb on - strand, within HSERO_RS00115 at 35.312 kb on - strand, within HSERO_RS00115 at 35.317 kb on - strand, within HSERO_RS00115 at 35.345 kb on - strand, within HSERO_RS00115 at 35.347 kb on + strand, within HSERO_RS00115 at 35.347 kb on + strand, within HSERO_RS00115 at 35.347 kb on + strand, within HSERO_RS00115 at 35.352 kb on + strand, within HSERO_RS00115 at 35.355 kb on - strand, within HSERO_RS00115 at 35.393 kb on + strand, within HSERO_RS00115 at 35.541 kb on + strand, within HSERO_RS00115 at 35.549 kb on - strand, within HSERO_RS00115 at 35.565 kb on + strand, within HSERO_RS00115 at 35.579 kb on + strand, within HSERO_RS00115 at 35.587 kb on - strand, within HSERO_RS00115 at 35.592 kb on + strand, within HSERO_RS00115 at 35.598 kb on + strand, within HSERO_RS00115 at 35.659 kb on - strand, within HSERO_RS00115 at 35.667 kb on + strand, within HSERO_RS00115 at 35.679 kb on - strand, within HSERO_RS00115 at 35.783 kb on + strand, within HSERO_RS00115
Per-strain Table
Position Strand Gene LocusTag Fraction Taped volatile agar plate with Trichoderma atroviridae IMI remove 32,802 - HSERO_RS00105 0.45 +1.1 33,014 + HSERO_RS00105 0.57 -1.7 33,014 + HSERO_RS00105 0.57 -0.4 33,014 + HSERO_RS00105 0.57 -0.6 33,014 + HSERO_RS00105 0.57 -1.6 33,022 - HSERO_RS00105 0.58 +0.6 33,022 - HSERO_RS00105 0.58 -1.4 33,037 - HSERO_RS00105 0.59 -0.4 33,078 - HSERO_RS00105 0.61 +0.7 33,173 + HSERO_RS00105 0.66 +1.5 33,174 + HSERO_RS00105 0.67 -0.9 33,248 - HSERO_RS00105 0.71 -0.6 33,290 + HSERO_RS00105 0.73 +0.3 33,321 - HSERO_RS00105 0.75 -0.2 33,335 + HSERO_RS00105 0.76 -1.2 33,335 + HSERO_RS00105 0.76 -0.4 33,349 - HSERO_RS00105 0.77 -0.3 33,370 + HSERO_RS00105 0.78 +0.5 33,521 + +0.3 33,531 + HSERO_RS00105 0.87 +0.2 33,586 - -1.2 33,680 + -1.2 33,683 + -0.6 33,735 + +0.5 33,737 + -0.2 33,743 - -0.1 33,743 - -0.2 33,821 + +0.7 33,821 + +0.4 33,821 + -0.4 33,829 - -0.4 33,849 + +0.3 33,857 - HSERO_RS00110 0.11 +0.1 33,857 - HSERO_RS00110 0.11 -0.6 33,929 + HSERO_RS00110 0.17 -0.6 33,929 + -0.9 33,937 - HSERO_RS00110 0.18 +0.2 33,976 + HSERO_RS00110 0.22 -0.7 33,976 + HSERO_RS00110 0.22 -1.6 33,990 + HSERO_RS00110 0.23 -0.2 33,990 + HSERO_RS00110 0.23 -0.8 33,998 - HSERO_RS00110 0.24 +0.1 33,998 - HSERO_RS00110 0.24 +2.3 33,998 - HSERO_RS00110 0.24 -2.4 33,998 - HSERO_RS00110 0.24 -0.3 34,043 + HSERO_RS00110 0.28 -1.5 34,046 - HSERO_RS00110 0.28 -0.1 34,048 + HSERO_RS00110 0.28 -0.9 34,048 + -1.6 34,048 + HSERO_RS00110 0.28 -0.9 34,048 + HSERO_RS00110 0.28 +0.5 34,048 + HSERO_RS00110 0.28 +2.2 34,048 + HSERO_RS00110 0.28 -0.3 34,048 + HSERO_RS00110 0.28 -0.1 34,048 + HSERO_RS00110 0.28 +0.1 34,048 + HSERO_RS00110 0.28 -0.9 34,048 + HSERO_RS00110 0.28 -0.7 34,054 + HSERO_RS00110 0.29 -0.2 34,056 - HSERO_RS00110 0.29 +0.0 34,056 - HSERO_RS00110 0.29 -0.2 34,056 - HSERO_RS00110 0.29 +0.0 34,056 - HSERO_RS00110 0.29 -0.9 34,056 - HSERO_RS00110 0.29 +0.1 34,056 - HSERO_RS00110 0.29 +0.7 34,056 - HSERO_RS00110 0.29 +0.3 34,056 - HSERO_RS00110 0.29 +0.7 34,059 + HSERO_RS00110 0.29 -0.7 34,062 - HSERO_RS00110 0.30 -1.4 34,067 - HSERO_RS00110 0.30 +0.1 34,116 + HSERO_RS00110 0.35 +0.4 34,116 + HSERO_RS00110 0.35 +0.7 34,116 + HSERO_RS00110 0.35 -1.3 34,124 - HSERO_RS00110 0.35 -0.6 34,136 - HSERO_RS00110 0.37 -0.1 34,137 + HSERO_RS00110 0.37 +1.0 34,158 - HSERO_RS00110 0.39 -0.7 34,158 - HSERO_RS00110 0.39 -0.0 34,162 - HSERO_RS00110 0.39 +0.0 34,189 + HSERO_RS00110 0.42 -1.2 34,197 - HSERO_RS00110 0.42 -0.0 34,202 - HSERO_RS00110 0.43 -1.6 34,213 - HSERO_RS00110 0.44 -0.7 34,515 + HSERO_RS00110 0.72 -0.9 34,531 + HSERO_RS00110 0.73 +0.2 34,531 + -1.1 34,573 - -0.2 34,729 - +0.8 34,736 - -0.2 34,736 - -0.1 34,780 + -1.4 34,793 - -1.6 34,810 + -2.0 34,836 + -0.2 34,837 - +0.9 34,842 - +0.1 34,842 - -1.1 34,842 - +0.0 34,864 - +1.7 34,947 + +0.0 34,947 + -0.5 34,960 - +0.4 34,980 - -1.3 34,980 - -0.1 34,983 + -1.6 34,991 - +0.4 34,993 + HSERO_RS00115 0.10 -1.6 34,999 - HSERO_RS00115 0.11 +0.2 35,046 - HSERO_RS00115 0.15 -0.2 35,071 + HSERO_RS00115 0.17 -0.0 35,071 + HSERO_RS00115 0.17 +0.1 35,112 + HSERO_RS00115 0.21 +1.3 35,113 + HSERO_RS00115 0.21 -0.3 35,113 + HSERO_RS00115 0.21 -0.2 35,113 + HSERO_RS00115 0.21 -0.1 35,126 - HSERO_RS00115 0.23 +0.6 35,126 - HSERO_RS00115 0.23 -0.3 35,126 - HSERO_RS00115 0.23 -0.3 35,132 + HSERO_RS00115 0.23 -1.3 35,132 + HSERO_RS00115 0.23 -0.3 35,140 - HSERO_RS00115 0.24 -0.2 35,190 + HSERO_RS00115 0.29 +0.3 35,190 + HSERO_RS00115 0.29 -2.7 35,190 + HSERO_RS00115 0.29 -0.6 35,190 + HSERO_RS00115 0.29 +1.3 35,190 + HSERO_RS00115 0.29 +0.4 35,198 - HSERO_RS00115 0.29 +0.3 35,198 - HSERO_RS00115 0.29 +0.3 35,198 - HSERO_RS00115 0.29 -1.1 35,198 - HSERO_RS00115 0.29 +0.0 35,200 + HSERO_RS00115 0.29 -1.2 35,209 - HSERO_RS00115 0.30 -1.6 35,238 + HSERO_RS00115 0.33 +1.7 35,256 + HSERO_RS00115 0.35 -0.2 35,263 + HSERO_RS00115 0.35 +1.3 35,270 + HSERO_RS00115 0.36 -1.7 35,271 - HSERO_RS00115 0.36 +0.5 35,278 - HSERO_RS00115 0.37 -0.7 35,283 + HSERO_RS00115 0.37 +0.6 35,285 + HSERO_RS00115 0.37 -0.5 35,295 - HSERO_RS00115 0.38 -0.2 35,312 - HSERO_RS00115 0.40 -0.4 35,317 - HSERO_RS00115 0.40 -0.9 35,345 - HSERO_RS00115 0.43 -0.8 35,347 + HSERO_RS00115 0.43 -0.0 35,347 + HSERO_RS00115 0.43 +0.0 35,347 + HSERO_RS00115 0.43 -0.1 35,352 + HSERO_RS00115 0.44 -0.6 35,355 - HSERO_RS00115 0.44 -1.0 35,393 + HSERO_RS00115 0.48 -0.3 35,541 + HSERO_RS00115 0.61 -0.7 35,549 - HSERO_RS00115 0.62 -0.7 35,565 + HSERO_RS00115 0.64 +0.2 35,579 + HSERO_RS00115 0.65 -1.4 35,587 - HSERO_RS00115 0.66 -1.8 35,592 + HSERO_RS00115 0.66 -1.2 35,598 + HSERO_RS00115 0.67 -1.7 35,659 - HSERO_RS00115 0.72 -0.7 35,667 + HSERO_RS00115 0.73 -0.7 35,679 - HSERO_RS00115 0.74 -0.3 35,783 + HSERO_RS00115 0.84 +0.1
Or see this region's nucleotide sequence