Experiment: Octanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS23030 and ABZR87_RS23035 overlap by 17 nucleotides ABZR87_RS23035 and ABZR87_RS23040 overlap by 4 nucleotides ABZR87_RS23040 and ABZR87_RS23045 are separated by 96 nucleotides
ABZR87_RS23030: ABZR87_RS23030 - glycosyltransferase, at 1,526,794 to 1,527,717
_RS23030
ABZR87_RS23035: ABZR87_RS23035 - PIG-L family deacetylase, at 1,527,701 to 1,528,423
_RS23035
ABZR87_RS23040: ABZR87_RS23040 - zinc-dependent alcohol dehydrogenase, at 1,528,420 to 1,529,691
_RS23040
ABZR87_RS23045: ABZR87_RS23045 - Nramp family divalent metal transporter, at 1,529,788 to 1,531,059
_RS23045
Position (kb)
1528
1529
1530 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1527.449 kb on + strand, within ABZR87_RS23030 at 1527.449 kb on + strand, within ABZR87_RS23030 at 1527.450 kb on - strand, within ABZR87_RS23030 at 1527.498 kb on - strand, within ABZR87_RS23030 at 1527.656 kb on + strand at 1527.656 kb on + strand at 1527.656 kb on + strand at 1527.656 kb on + strand at 1527.656 kb on + strand at 1527.657 kb on - strand at 1527.817 kb on - strand, within ABZR87_RS23035 at 1527.943 kb on - strand, within ABZR87_RS23035 at 1528.090 kb on - strand, within ABZR87_RS23035 at 1528.614 kb on - strand, within ABZR87_RS23040 at 1528.702 kb on + strand, within ABZR87_RS23040 at 1528.702 kb on + strand, within ABZR87_RS23040 at 1528.703 kb on - strand, within ABZR87_RS23040 at 1528.703 kb on - strand, within ABZR87_RS23040 at 1528.703 kb on - strand, within ABZR87_RS23040 at 1529.189 kb on + strand, within ABZR87_RS23040 at 1529.189 kb on + strand, within ABZR87_RS23040 at 1529.394 kb on - strand, within ABZR87_RS23040 at 1529.408 kb on + strand, within ABZR87_RS23040 at 1529.408 kb on + strand, within ABZR87_RS23040 at 1529.677 kb on + strand at 1529.677 kb on + strand at 1529.677 kb on + strand at 1529.677 kb on + strand at 1529.678 kb on - strand at 1529.978 kb on + strand, within ABZR87_RS23045 at 1529.978 kb on + strand, within ABZR87_RS23045 at 1529.979 kb on - strand, within ABZR87_RS23045 at 1530.053 kb on + strand, within ABZR87_RS23045 at 1530.054 kb on - strand, within ABZR87_RS23045 at 1530.054 kb on - strand, within ABZR87_RS23045 at 1530.094 kb on - strand, within ABZR87_RS23045 at 1530.123 kb on - strand, within ABZR87_RS23045 at 1530.281 kb on + strand, within ABZR87_RS23045 at 1530.282 kb on - strand, within ABZR87_RS23045 at 1530.461 kb on + strand, within ABZR87_RS23045 at 1530.461 kb on + strand, within ABZR87_RS23045 at 1530.462 kb on - strand, within ABZR87_RS23045 at 1530.506 kb on + strand, within ABZR87_RS23045 at 1530.506 kb on + strand, within ABZR87_RS23045 at 1530.507 kb on - strand, within ABZR87_RS23045 at 1530.593 kb on + strand, within ABZR87_RS23045 at 1530.593 kb on + strand, within ABZR87_RS23045 at 1530.593 kb on + strand, within ABZR87_RS23045 at 1530.593 kb on + strand, within ABZR87_RS23045 at 1530.593 kb on + strand, within ABZR87_RS23045 at 1530.594 kb on - strand, within ABZR87_RS23045 at 1530.594 kb on - strand, within ABZR87_RS23045 at 1530.594 kb on - strand, within ABZR87_RS23045 at 1530.594 kb on - strand, within ABZR87_RS23045 at 1530.594 kb on - strand, within ABZR87_RS23045 at 1530.626 kb on + strand, within ABZR87_RS23045 at 1530.635 kb on + strand, within ABZR87_RS23045
Per-strain Table
Position Strand Gene LocusTag Fraction Octanoic (C) remove 1,527,449 + ABZR87_RS23030 0.71 -1.2 1,527,449 + ABZR87_RS23030 0.71 +1.7 1,527,450 - ABZR87_RS23030 0.71 -0.1 1,527,498 - ABZR87_RS23030 0.76 +1.3 1,527,656 + -0.8 1,527,656 + -1.5 1,527,656 + -2.4 1,527,656 + +0.7 1,527,656 + -0.3 1,527,657 - -3.2 1,527,817 - ABZR87_RS23035 0.16 +1.2 1,527,943 - ABZR87_RS23035 0.33 -1.4 1,528,090 - ABZR87_RS23035 0.54 -1.9 1,528,614 - ABZR87_RS23040 0.15 +1.4 1,528,702 + ABZR87_RS23040 0.22 +0.2 1,528,702 + ABZR87_RS23040 0.22 -0.8 1,528,703 - ABZR87_RS23040 0.22 +3.1 1,528,703 - ABZR87_RS23040 0.22 +0.6 1,528,703 - ABZR87_RS23040 0.22 +0.1 1,529,189 + ABZR87_RS23040 0.60 +0.9 1,529,189 + ABZR87_RS23040 0.60 +1.5 1,529,394 - ABZR87_RS23040 0.77 +0.2 1,529,408 + ABZR87_RS23040 0.78 -0.4 1,529,408 + ABZR87_RS23040 0.78 +2.3 1,529,677 + -1.2 1,529,677 + -2.2 1,529,677 + -1.1 1,529,677 + +2.1 1,529,678 - -3.6 1,529,978 + ABZR87_RS23045 0.15 +1.3 1,529,978 + ABZR87_RS23045 0.15 -2.5 1,529,979 - ABZR87_RS23045 0.15 -1.1 1,530,053 + ABZR87_RS23045 0.21 -3.0 1,530,054 - ABZR87_RS23045 0.21 -0.2 1,530,054 - ABZR87_RS23045 0.21 +0.5 1,530,094 - ABZR87_RS23045 0.24 +0.6 1,530,123 - ABZR87_RS23045 0.26 +1.4 1,530,281 + ABZR87_RS23045 0.39 -0.3 1,530,282 - ABZR87_RS23045 0.39 +0.7 1,530,461 + ABZR87_RS23045 0.53 +0.6 1,530,461 + ABZR87_RS23045 0.53 +0.6 1,530,462 - ABZR87_RS23045 0.53 -1.1 1,530,506 + ABZR87_RS23045 0.56 +0.9 1,530,506 + ABZR87_RS23045 0.56 -1.7 1,530,507 - ABZR87_RS23045 0.57 -1.1 1,530,593 + ABZR87_RS23045 0.63 -2.5 1,530,593 + ABZR87_RS23045 0.63 +0.3 1,530,593 + ABZR87_RS23045 0.63 -1.8 1,530,593 + ABZR87_RS23045 0.63 +0.6 1,530,593 + ABZR87_RS23045 0.63 +2.6 1,530,594 - ABZR87_RS23045 0.63 +0.7 1,530,594 - ABZR87_RS23045 0.63 +1.9 1,530,594 - ABZR87_RS23045 0.63 -0.2 1,530,594 - ABZR87_RS23045 0.63 -2.5 1,530,594 - ABZR87_RS23045 0.63 +2.7 1,530,626 + ABZR87_RS23045 0.66 -1.1 1,530,635 + ABZR87_RS23045 0.67 +1.7
Or see this region's nucleotide sequence