Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21760

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21755 and ABZR87_RS21760 overlap by 20 nucleotidesABZR87_RS21760 and ABZR87_RS21765 are separated by 698 nucleotides ABZR87_RS21755: ABZR87_RS21755 - ATP-binding cassette domain-containing protein, at 1,265,356 to 1,266,492 _RS21755 ABZR87_RS21760: ABZR87_RS21760 - methionine ABC transporter permease, at 1,266,473 to 1,267,126 _RS21760 ABZR87_RS21765: ABZR87_RS21765 - family 2A encapsulin nanocompartment cargo protein cysteine desulfurase, at 1,267,825 to 1,269,693 _RS21765 Position (kb) 1266 1267 1268Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1265.485 kb on + strand, within ABZR87_RS21755at 1265.486 kb on - strand, within ABZR87_RS21755at 1265.486 kb on - strand, within ABZR87_RS21755at 1265.750 kb on + strand, within ABZR87_RS21755at 1265.750 kb on + strand, within ABZR87_RS21755at 1265.751 kb on - strand, within ABZR87_RS21755at 1265.863 kb on + strand, within ABZR87_RS21755at 1265.863 kb on + strand, within ABZR87_RS21755at 1265.864 kb on - strand, within ABZR87_RS21755at 1266.275 kb on - strand, within ABZR87_RS21755at 1266.753 kb on + strand, within ABZR87_RS21760at 1266.753 kb on + strand, within ABZR87_RS21760at 1266.754 kb on - strand, within ABZR87_RS21760at 1266.922 kb on + strand, within ABZR87_RS21760at 1266.922 kb on + strand, within ABZR87_RS21760at 1266.923 kb on - strand, within ABZR87_RS21760at 1267.013 kb on + strand, within ABZR87_RS21760at 1267.114 kb on + strandat 1267.114 kb on + strandat 1267.115 kb on - strandat 1267.160 kb on - strandat 1267.363 kb on + strandat 1267.364 kb on - strandat 1267.409 kb on - strandat 1267.409 kb on - strandat 1267.409 kb on - strandat 1267.532 kb on + strandat 1267.672 kb on + strandat 1267.672 kb on + strandat 1267.672 kb on + strandat 1267.887 kb on - strandat 1267.966 kb on + strandat 1268.108 kb on + strand, within ABZR87_RS21765at 1268.108 kb on + strand, within ABZR87_RS21765at 1268.109 kb on - strand, within ABZR87_RS21765at 1268.109 kb on - strand, within ABZR87_RS21765at 1268.109 kb on - strand, within ABZR87_RS21765

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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1,265,485 + ABZR87_RS21755 0.11 -0.2
1,265,486 - ABZR87_RS21755 0.11 +2.3
1,265,486 - ABZR87_RS21755 0.11 +1.2
1,265,750 + ABZR87_RS21755 0.35 +1.3
1,265,750 + ABZR87_RS21755 0.35 +0.2
1,265,751 - ABZR87_RS21755 0.35 +1.7
1,265,863 + ABZR87_RS21755 0.45 +1.6
1,265,863 + ABZR87_RS21755 0.45 -0.7
1,265,864 - ABZR87_RS21755 0.45 +0.8
1,266,275 - ABZR87_RS21755 0.81 -2.6
1,266,753 + ABZR87_RS21760 0.43 +0.5
1,266,753 + ABZR87_RS21760 0.43 +0.2
1,266,754 - ABZR87_RS21760 0.43 -3.3
1,266,922 + ABZR87_RS21760 0.69 -0.5
1,266,922 + ABZR87_RS21760 0.69 -3.3
1,266,923 - ABZR87_RS21760 0.69 -0.2
1,267,013 + ABZR87_RS21760 0.83 +2.5
1,267,114 + -2.7
1,267,114 + -1.4
1,267,115 - -2.6
1,267,160 - +0.4
1,267,363 + -0.3
1,267,364 - +2.5
1,267,409 - -2.5
1,267,409 - -0.9
1,267,409 - +1.3
1,267,532 + -3.2
1,267,672 + +1.2
1,267,672 + +0.3
1,267,672 + -1.8
1,267,887 - +0.1
1,267,966 + -0.1
1,268,108 + ABZR87_RS21765 0.15 +1.2
1,268,108 + ABZR87_RS21765 0.15 -1.1
1,268,109 - ABZR87_RS21765 0.15 -1.0
1,268,109 - ABZR87_RS21765 0.15 +0.5
1,268,109 - ABZR87_RS21765 0.15 -1.3

Or see this region's nucleotide sequence