Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19555

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19545 and ABZR87_RS19550 overlap by 8 nucleotidesABZR87_RS19550 and ABZR87_RS19555 are separated by 9 nucleotidesABZR87_RS19555 and ABZR87_RS19560 are separated by 1 nucleotidesABZR87_RS19560 and ABZR87_RS19565 overlap by 4 nucleotides ABZR87_RS19545: ABZR87_RS19545 - CpaF family protein, at 757,184 to 758,539 _RS19545 ABZR87_RS19550: ABZR87_RS19550 - type II secretion system F family protein, at 758,532 to 759,458 _RS19550 ABZR87_RS19555: ABZR87_RS19555 - type II secretion system F family protein, at 759,468 to 760,457 _RS19555 ABZR87_RS19560: ABZR87_RS19560 - lipoprotein, at 760,459 to 761,394 _RS19560 ABZR87_RS19565: ABZR87_RS19565 - DUF3613 domain-containing protein, at 761,391 to 761,720 _RS19565 Position (kb) 759 760 761Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 758.537 kb on + strandat 758.537 kb on + strandat 758.537 kb on + strandat 758.537 kb on + strandat 758.538 kb on - strandat 758.679 kb on + strand, within ABZR87_RS19550at 758.784 kb on + strand, within ABZR87_RS19550at 758.785 kb on - strand, within ABZR87_RS19550at 758.827 kb on + strand, within ABZR87_RS19550at 758.828 kb on - strand, within ABZR87_RS19550at 758.874 kb on + strand, within ABZR87_RS19550at 758.874 kb on + strand, within ABZR87_RS19550at 758.874 kb on + strand, within ABZR87_RS19550at 758.875 kb on - strand, within ABZR87_RS19550at 759.348 kb on + strand, within ABZR87_RS19550at 759.348 kb on + strand, within ABZR87_RS19550at 759.348 kb on + strand, within ABZR87_RS19550at 759.348 kb on + strand, within ABZR87_RS19550at 759.348 kb on + strand, within ABZR87_RS19550at 759.348 kb on + strand, within ABZR87_RS19550at 759.348 kb on + strand, within ABZR87_RS19550at 759.349 kb on - strand, within ABZR87_RS19550at 759.349 kb on - strand, within ABZR87_RS19550at 759.349 kb on - strand, within ABZR87_RS19550at 759.349 kb on - strand, within ABZR87_RS19550at 759.349 kb on - strand, within ABZR87_RS19550at 759.349 kb on - strand, within ABZR87_RS19550at 759.349 kb on - strand, within ABZR87_RS19550at 759.349 kb on - strand, within ABZR87_RS19550at 759.456 kb on + strandat 759.457 kb on - strandat 759.457 kb on - strandat 759.804 kb on + strand, within ABZR87_RS19555at 759.805 kb on - strand, within ABZR87_RS19555at 759.842 kb on + strand, within ABZR87_RS19555at 759.842 kb on + strand, within ABZR87_RS19555at 759.843 kb on - strand, within ABZR87_RS19555at 759.843 kb on - strand, within ABZR87_RS19555at 759.940 kb on - strand, within ABZR87_RS19555at 759.950 kb on + strand, within ABZR87_RS19555at 759.951 kb on - strand, within ABZR87_RS19555at 759.951 kb on - strand, within ABZR87_RS19555at 759.951 kb on - strand, within ABZR87_RS19555at 759.951 kb on - strand, within ABZR87_RS19555at 759.951 kb on - strand, within ABZR87_RS19555at 759.951 kb on - strand, within ABZR87_RS19555at 760.181 kb on + strand, within ABZR87_RS19555at 760.223 kb on + strand, within ABZR87_RS19555at 760.224 kb on - strand, within ABZR87_RS19555at 760.224 kb on - strand, within ABZR87_RS19555at 760.442 kb on + strandat 760.442 kb on + strandat 760.678 kb on + strand, within ABZR87_RS19560at 760.678 kb on + strand, within ABZR87_RS19560at 760.678 kb on + strand, within ABZR87_RS19560at 760.679 kb on - strand, within ABZR87_RS19560at 760.679 kb on - strand, within ABZR87_RS19560at 760.679 kb on - strand, within ABZR87_RS19560at 760.681 kb on + strand, within ABZR87_RS19560at 760.681 kb on + strand, within ABZR87_RS19560at 760.681 kb on + strand, within ABZR87_RS19560at 760.682 kb on - strand, within ABZR87_RS19560at 760.682 kb on - strand, within ABZR87_RS19560at 760.699 kb on - strand, within ABZR87_RS19560at 760.709 kb on - strand, within ABZR87_RS19560at 760.709 kb on - strand, within ABZR87_RS19560at 760.721 kb on - strand, within ABZR87_RS19560

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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758,537 + +1.5
758,537 + -2.3
758,537 + +0.6
758,537 + -2.4
758,538 - +3.4
758,679 + ABZR87_RS19550 0.16 +0.0
758,784 + ABZR87_RS19550 0.27 -2.5
758,785 - ABZR87_RS19550 0.27 -0.0
758,827 + ABZR87_RS19550 0.32 -0.3
758,828 - ABZR87_RS19550 0.32 -4.2
758,874 + ABZR87_RS19550 0.37 -0.5
758,874 + ABZR87_RS19550 0.37 +2.7
758,874 + ABZR87_RS19550 0.37 +2.0
758,875 - ABZR87_RS19550 0.37 -3.3
759,348 + ABZR87_RS19550 0.88 +3.2
759,348 + ABZR87_RS19550 0.88 -3.7
759,348 + ABZR87_RS19550 0.88 +2.6
759,348 + ABZR87_RS19550 0.88 +2.8
759,348 + ABZR87_RS19550 0.88 +1.6
759,348 + ABZR87_RS19550 0.88 +1.5
759,348 + ABZR87_RS19550 0.88 -1.7
759,349 - ABZR87_RS19550 0.88 +3.0
759,349 - ABZR87_RS19550 0.88 +2.6
759,349 - ABZR87_RS19550 0.88 +2.0
759,349 - ABZR87_RS19550 0.88 -0.7
759,349 - ABZR87_RS19550 0.88 +0.9
759,349 - ABZR87_RS19550 0.88 +1.3
759,349 - ABZR87_RS19550 0.88 -2.3
759,349 - ABZR87_RS19550 0.88 -2.0
759,456 + +4.1
759,457 - -0.1
759,457 - +0.0
759,804 + ABZR87_RS19555 0.34 +1.9
759,805 - ABZR87_RS19555 0.34 +0.9
759,842 + ABZR87_RS19555 0.38 +3.2
759,842 + ABZR87_RS19555 0.38 +1.0
759,843 - ABZR87_RS19555 0.38 -1.7
759,843 - ABZR87_RS19555 0.38 +0.5
759,940 - ABZR87_RS19555 0.48 +0.7
759,950 + ABZR87_RS19555 0.49 +4.6
759,951 - ABZR87_RS19555 0.49 +1.5
759,951 - ABZR87_RS19555 0.49 +2.5
759,951 - ABZR87_RS19555 0.49 -0.7
759,951 - ABZR87_RS19555 0.49 +1.0
759,951 - ABZR87_RS19555 0.49 +3.2
759,951 - ABZR87_RS19555 0.49 -0.2
760,181 + ABZR87_RS19555 0.72 +3.3
760,223 + ABZR87_RS19555 0.76 +2.4
760,224 - ABZR87_RS19555 0.76 +1.6
760,224 - ABZR87_RS19555 0.76 +1.7
760,442 + +1.7
760,442 + -2.7
760,678 + ABZR87_RS19560 0.23 +1.2
760,678 + ABZR87_RS19560 0.23 -1.9
760,678 + ABZR87_RS19560 0.23 +3.3
760,679 - ABZR87_RS19560 0.24 +1.5
760,679 - ABZR87_RS19560 0.24 +1.4
760,679 - ABZR87_RS19560 0.24 -0.2
760,681 + ABZR87_RS19560 0.24 +2.5
760,681 + ABZR87_RS19560 0.24 +1.8
760,681 + ABZR87_RS19560 0.24 +1.6
760,682 - ABZR87_RS19560 0.24 +3.1
760,682 - ABZR87_RS19560 0.24 +0.9
760,699 - ABZR87_RS19560 0.26 -2.9
760,709 - ABZR87_RS19560 0.27 +1.7
760,709 - ABZR87_RS19560 0.27 +3.2
760,721 - ABZR87_RS19560 0.28 +0.5

Or see this region's nucleotide sequence