Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18540

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18535 and ABZR87_RS18540 are separated by 157 nucleotidesABZR87_RS18540 and ABZR87_RS18545 are separated by 7 nucleotides ABZR87_RS18535: ABZR87_RS18535 - PLP-dependent aminotransferase family protein, at 513,066 to 514,619 _RS18535 ABZR87_RS18540: ABZR87_RS18540 - branched-chain amino acid aminotransferase, at 514,777 to 515,877 _RS18540 ABZR87_RS18545: ABZR87_RS18545 - alpha/beta hydrolase, at 515,885 to 516,697 _RS18545 Position (kb) 514 515 516Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 513.985 kb on - strand, within ABZR87_RS18535at 514.002 kb on + strand, within ABZR87_RS18535at 514.060 kb on - strand, within ABZR87_RS18535at 514.060 kb on - strand, within ABZR87_RS18535at 514.107 kb on + strand, within ABZR87_RS18535at 514.108 kb on - strand, within ABZR87_RS18535at 514.186 kb on + strand, within ABZR87_RS18535at 514.187 kb on - strand, within ABZR87_RS18535at 514.187 kb on - strand, within ABZR87_RS18535at 514.187 kb on - strand, within ABZR87_RS18535at 514.258 kb on - strand, within ABZR87_RS18535at 514.453 kb on - strand, within ABZR87_RS18535at 514.684 kb on + strandat 514.685 kb on + strandat 514.685 kb on + strandat 514.685 kb on + strandat 514.685 kb on + strandat 514.685 kb on + strandat 514.685 kb on + strandat 514.685 kb on + strandat 514.685 kb on + strandat 514.685 kb on + strandat 514.686 kb on - strandat 514.686 kb on - strandat 514.686 kb on - strandat 514.686 kb on - strandat 514.686 kb on - strandat 514.686 kb on - strandat 514.686 kb on - strandat 514.686 kb on - strandat 514.686 kb on - strandat 514.686 kb on - strandat 514.686 kb on - strandat 514.697 kb on + strandat 514.698 kb on - strandat 514.698 kb on - strandat 514.777 kb on - strandat 514.777 kb on - strandat 514.777 kb on - strandat 514.777 kb on - strandat 514.880 kb on + strandat 514.910 kb on - strand, within ABZR87_RS18540at 514.994 kb on - strand, within ABZR87_RS18540at 514.994 kb on - strand, within ABZR87_RS18540at 515.026 kb on + strand, within ABZR87_RS18540at 515.026 kb on + strand, within ABZR87_RS18540at 515.206 kb on + strand, within ABZR87_RS18540at 515.206 kb on + strand, within ABZR87_RS18540at 515.267 kb on - strand, within ABZR87_RS18540at 515.302 kb on + strand, within ABZR87_RS18540at 515.302 kb on + strand, within ABZR87_RS18540at 515.303 kb on - strand, within ABZR87_RS18540at 515.303 kb on - strand, within ABZR87_RS18540at 515.303 kb on - strand, within ABZR87_RS18540at 515.353 kb on + strand, within ABZR87_RS18540at 515.354 kb on - strand, within ABZR87_RS18540at 515.354 kb on - strand, within ABZR87_RS18540at 515.354 kb on - strand, within ABZR87_RS18540at 515.354 kb on - strand, within ABZR87_RS18540at 515.404 kb on + strand, within ABZR87_RS18540at 515.404 kb on + strand, within ABZR87_RS18540at 515.404 kb on + strand, within ABZR87_RS18540at 515.404 kb on + strand, within ABZR87_RS18540at 515.404 kb on + strand, within ABZR87_RS18540at 515.404 kb on + strand, within ABZR87_RS18540at 515.404 kb on + strand, within ABZR87_RS18540at 515.405 kb on - strand, within ABZR87_RS18540at 515.405 kb on - strand, within ABZR87_RS18540at 515.405 kb on - strand, within ABZR87_RS18540at 515.405 kb on - strand, within ABZR87_RS18540at 515.405 kb on - strand, within ABZR87_RS18540at 515.405 kb on - strand, within ABZR87_RS18540at 515.644 kb on + strand, within ABZR87_RS18540at 515.957 kb on + strandat 515.958 kb on - strandat 515.958 kb on - strandat 515.958 kb on - strandat 516.098 kb on + strand, within ABZR87_RS18545at 516.098 kb on + strand, within ABZR87_RS18545at 516.099 kb on - strand, within ABZR87_RS18545at 516.099 kb on - strand, within ABZR87_RS18545at 516.099 kb on - strand, within ABZR87_RS18545at 516.099 kb on - strand, within ABZR87_RS18545at 516.131 kb on + strand, within ABZR87_RS18545at 516.173 kb on + strand, within ABZR87_RS18545at 516.276 kb on - strand, within ABZR87_RS18545at 516.545 kb on + strand, within ABZR87_RS18545at 516.545 kb on + strand, within ABZR87_RS18545at 516.725 kb on + strandat 516.726 kb on - strandat 516.874 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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513,985 - ABZR87_RS18535 0.59 +1.5
514,002 + ABZR87_RS18535 0.60 +2.4
514,060 - ABZR87_RS18535 0.64 +0.2
514,060 - ABZR87_RS18535 0.64 +1.7
514,107 + ABZR87_RS18535 0.67 -3.3
514,108 - ABZR87_RS18535 0.67 -2.0
514,186 + ABZR87_RS18535 0.72 -1.4
514,187 - ABZR87_RS18535 0.72 -0.3
514,187 - ABZR87_RS18535 0.72 -1.6
514,187 - ABZR87_RS18535 0.72 +0.3
514,258 - ABZR87_RS18535 0.77 +0.3
514,453 - ABZR87_RS18535 0.89 -0.3
514,684 + -0.2
514,685 + +0.9
514,685 + +1.6
514,685 + -1.7
514,685 + -2.3
514,685 + +0.7
514,685 + -0.5
514,685 + -0.6
514,685 + +2.0
514,685 + -2.6
514,686 - +0.7
514,686 - +0.8
514,686 - -2.0
514,686 - -3.2
514,686 - +1.3
514,686 - +1.3
514,686 - +2.8
514,686 - +1.4
514,686 - -2.2
514,686 - +0.8
514,686 - -2.2
514,697 + -0.6
514,698 - +1.5
514,698 - -0.0
514,777 - +2.8
514,777 - -2.6
514,777 - +0.8
514,777 - -0.3
514,880 + +0.5
514,910 - ABZR87_RS18540 0.12 +2.4
514,994 - ABZR87_RS18540 0.20 -0.2
514,994 - ABZR87_RS18540 0.20 -2.9
515,026 + ABZR87_RS18540 0.23 -0.5
515,026 + ABZR87_RS18540 0.23 +1.3
515,206 + ABZR87_RS18540 0.39 -0.0
515,206 + ABZR87_RS18540 0.39 +1.5
515,267 - ABZR87_RS18540 0.45 -0.2
515,302 + ABZR87_RS18540 0.48 -0.3
515,302 + ABZR87_RS18540 0.48 +2.8
515,303 - ABZR87_RS18540 0.48 +1.5
515,303 - ABZR87_RS18540 0.48 -0.2
515,303 - ABZR87_RS18540 0.48 +1.4
515,353 + ABZR87_RS18540 0.52 -1.8
515,354 - ABZR87_RS18540 0.52 -1.0
515,354 - ABZR87_RS18540 0.52 +2.6
515,354 - ABZR87_RS18540 0.52 +0.8
515,354 - ABZR87_RS18540 0.52 +0.4
515,404 + ABZR87_RS18540 0.57 +2.0
515,404 + ABZR87_RS18540 0.57 +1.5
515,404 + ABZR87_RS18540 0.57 +1.5
515,404 + ABZR87_RS18540 0.57 +1.0
515,404 + ABZR87_RS18540 0.57 -3.6
515,404 + ABZR87_RS18540 0.57 +0.4
515,404 + ABZR87_RS18540 0.57 -1.1
515,405 - ABZR87_RS18540 0.57 +0.4
515,405 - ABZR87_RS18540 0.57 +1.0
515,405 - ABZR87_RS18540 0.57 +3.2
515,405 - ABZR87_RS18540 0.57 +1.2
515,405 - ABZR87_RS18540 0.57 +1.6
515,405 - ABZR87_RS18540 0.57 +0.1
515,644 + ABZR87_RS18540 0.79 -0.4
515,957 + -2.3
515,958 - -0.2
515,958 - -0.6
515,958 - -3.2
516,098 + ABZR87_RS18545 0.26 +0.9
516,098 + ABZR87_RS18545 0.26 -2.4
516,099 - ABZR87_RS18545 0.26 -3.0
516,099 - ABZR87_RS18545 0.26 +0.9
516,099 - ABZR87_RS18545 0.26 +1.0
516,099 - ABZR87_RS18545 0.26 +1.1
516,131 + ABZR87_RS18545 0.30 +0.4
516,173 + ABZR87_RS18545 0.35 +2.8
516,276 - ABZR87_RS18545 0.48 +0.5
516,545 + ABZR87_RS18545 0.81 -0.8
516,545 + ABZR87_RS18545 0.81 +0.9
516,725 + -1.7
516,726 - +1.7
516,874 + -2.6

Or see this region's nucleotide sequence