Experiment: Octanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18205 and ABZR87_RS18210 are separated by 27 nucleotides ABZR87_RS18210 and ABZR87_RS18215 overlap by 4 nucleotides
ABZR87_RS18205: ABZR87_RS18205 - nucleobase:cation symporter-2 family protein, at 454,109 to 455,536
_RS18205
ABZR87_RS18210: ABZR87_RS18210 - aldose epimerase family protein, at 455,564 to 456,646
_RS18210
ABZR87_RS18215: ABZR87_RS18215 - DNA-binding transcriptional regulator, at 456,643 to 457,866
_RS18215
Position (kb) 455
456
457 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 454.889 kb on + strand, within ABZR87_RS18205 at 454.889 kb on + strand, within ABZR87_RS18205 at 454.890 kb on - strand, within ABZR87_RS18205 at 454.890 kb on - strand, within ABZR87_RS18205 at 455.092 kb on + strand, within ABZR87_RS18205 at 455.093 kb on - strand, within ABZR87_RS18205 at 455.147 kb on + strand, within ABZR87_RS18205 at 455.147 kb on + strand, within ABZR87_RS18205 at 455.147 kb on + strand, within ABZR87_RS18205 at 455.147 kb on + strand, within ABZR87_RS18205 at 455.148 kb on - strand, within ABZR87_RS18205 at 455.207 kb on + strand, within ABZR87_RS18205 at 455.207 kb on + strand, within ABZR87_RS18205 at 455.208 kb on - strand, within ABZR87_RS18205 at 455.231 kb on + strand, within ABZR87_RS18205 at 455.232 kb on - strand, within ABZR87_RS18205 at 455.232 kb on - strand, within ABZR87_RS18205 at 455.232 kb on - strand, within ABZR87_RS18205 at 455.593 kb on - strand at 455.610 kb on + strand at 455.690 kb on + strand, within ABZR87_RS18210 at 455.690 kb on + strand, within ABZR87_RS18210 at 455.691 kb on - strand, within ABZR87_RS18210 at 455.691 kb on - strand, within ABZR87_RS18210 at 455.737 kb on - strand, within ABZR87_RS18210 at 455.796 kb on + strand, within ABZR87_RS18210 at 455.843 kb on - strand, within ABZR87_RS18210 at 456.124 kb on - strand, within ABZR87_RS18210 at 456.124 kb on - strand, within ABZR87_RS18210 at 456.257 kb on + strand, within ABZR87_RS18210 at 456.324 kb on + strand, within ABZR87_RS18210 at 456.324 kb on + strand, within ABZR87_RS18210 at 456.324 kb on + strand, within ABZR87_RS18210 at 456.325 kb on - strand, within ABZR87_RS18210 at 456.344 kb on - strand, within ABZR87_RS18210 at 456.415 kb on - strand, within ABZR87_RS18210 at 456.712 kb on + strand at 456.725 kb on + strand at 456.725 kb on + strand at 456.726 kb on - strand at 456.726 kb on - strand at 456.726 kb on - strand at 456.726 kb on - strand at 456.738 kb on + strand at 456.738 kb on + strand at 456.739 kb on - strand at 456.739 kb on - strand at 456.889 kb on - strand, within ABZR87_RS18215 at 456.968 kb on + strand, within ABZR87_RS18215 at 456.968 kb on + strand, within ABZR87_RS18215 at 456.969 kb on - strand, within ABZR87_RS18215 at 456.969 kb on - strand, within ABZR87_RS18215 at 456.969 kb on - strand, within ABZR87_RS18215 at 457.356 kb on - strand, within ABZR87_RS18215 at 457.408 kb on - strand, within ABZR87_RS18215 at 457.544 kb on + strand, within ABZR87_RS18215 at 457.544 kb on + strand, within ABZR87_RS18215 at 457.544 kb on + strand, within ABZR87_RS18215 at 457.544 kb on + strand, within ABZR87_RS18215 at 457.544 kb on + strand, within ABZR87_RS18215 at 457.545 kb on - strand, within ABZR87_RS18215 at 457.545 kb on - strand, within ABZR87_RS18215 at 457.562 kb on + strand, within ABZR87_RS18215 at 457.563 kb on - strand, within ABZR87_RS18215 at 457.580 kb on + strand, within ABZR87_RS18215 at 457.581 kb on - strand, within ABZR87_RS18215 at 457.581 kb on - strand, within ABZR87_RS18215
Per-strain Table
Position Strand Gene LocusTag Fraction Octanoic (C) remove 454,889 + ABZR87_RS18205 0.55 -0.2 454,889 + ABZR87_RS18205 0.55 -0.8 454,890 - ABZR87_RS18205 0.55 +0.8 454,890 - ABZR87_RS18205 0.55 -0.6 455,092 + ABZR87_RS18205 0.69 +1.5 455,093 - ABZR87_RS18205 0.69 -2.1 455,147 + ABZR87_RS18205 0.73 -1.7 455,147 + ABZR87_RS18205 0.73 -0.7 455,147 + ABZR87_RS18205 0.73 -0.7 455,147 + ABZR87_RS18205 0.73 +0.2 455,148 - ABZR87_RS18205 0.73 +2.0 455,207 + ABZR87_RS18205 0.77 +0.9 455,207 + ABZR87_RS18205 0.77 -0.7 455,208 - ABZR87_RS18205 0.77 -0.2 455,231 + ABZR87_RS18205 0.79 -0.8 455,232 - ABZR87_RS18205 0.79 -0.5 455,232 - ABZR87_RS18205 0.79 +0.4 455,232 - ABZR87_RS18205 0.79 +1.3 455,593 - +1.1 455,610 + -0.2 455,690 + ABZR87_RS18210 0.12 +0.8 455,690 + ABZR87_RS18210 0.12 +0.9 455,691 - ABZR87_RS18210 0.12 +2.3 455,691 - ABZR87_RS18210 0.12 +1.9 455,737 - ABZR87_RS18210 0.16 +1.2 455,796 + ABZR87_RS18210 0.21 +1.8 455,843 - ABZR87_RS18210 0.26 +0.8 456,124 - ABZR87_RS18210 0.52 +0.4 456,124 - ABZR87_RS18210 0.52 +1.3 456,257 + ABZR87_RS18210 0.64 -3.2 456,324 + ABZR87_RS18210 0.70 -3.6 456,324 + ABZR87_RS18210 0.70 -2.6 456,324 + ABZR87_RS18210 0.70 -0.9 456,325 - ABZR87_RS18210 0.70 +0.8 456,344 - ABZR87_RS18210 0.72 -1.2 456,415 - ABZR87_RS18210 0.79 -1.4 456,712 + +1.9 456,725 + -2.4 456,725 + +2.7 456,726 - +0.2 456,726 - -1.1 456,726 - -1.0 456,726 - -2.2 456,738 + -2.4 456,738 + +0.3 456,739 - -1.3 456,739 - +1.3 456,889 - ABZR87_RS18215 0.20 -0.8 456,968 + ABZR87_RS18215 0.27 -3.2 456,968 + ABZR87_RS18215 0.27 -3.1 456,969 - ABZR87_RS18215 0.27 +1.0 456,969 - ABZR87_RS18215 0.27 -2.3 456,969 - ABZR87_RS18215 0.27 -1.9 457,356 - ABZR87_RS18215 0.58 -0.8 457,408 - ABZR87_RS18215 0.62 +0.7 457,544 + ABZR87_RS18215 0.74 +1.1 457,544 + ABZR87_RS18215 0.74 -0.6 457,544 + ABZR87_RS18215 0.74 -0.1 457,544 + ABZR87_RS18215 0.74 -0.4 457,544 + ABZR87_RS18215 0.74 -0.1 457,545 - ABZR87_RS18215 0.74 -0.3 457,545 - ABZR87_RS18215 0.74 +0.8 457,562 + ABZR87_RS18215 0.75 -1.0 457,563 - ABZR87_RS18215 0.75 -0.4 457,580 + ABZR87_RS18215 0.77 +0.7 457,581 - ABZR87_RS18215 0.77 +1.3 457,581 - ABZR87_RS18215 0.77 -1.9
Or see this region's nucleotide sequence